RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 CDNFQ49AH0 187 aa5.08□□□□□ -1.6
USP54-202ENST00000413442 HACD4Q5VWC8 232 aa5.08□□□□□ -1.6
USP54-202ENST00000413442 LIN54Q6MZP7 749 aa5.08□□□□□ -1.6
USP54-202ENST00000413442 CNIH2Q6PI25 160 aa5.08□□□□□ -1.6
USP54-202ENST00000413442 BAIAP2L2Q6UXY1 529 aa5.08□□□□□ -1.6
USP54-202ENST00000413442 PDPNQ86YL7 162 aa5.08□□□□□ -1.6
USP54-202ENST00000413442 Q8N9W7 124 aa5.08□□□□□ -1.6
USP54-202ENST00000413442 OR5AN1Q8NGI8 311 aa5.08□□□□□ -1.6
USP54-202ENST00000413442 OR1L1Q8NH94 360 aa5.08□□□□□ -1.6
USP54-202ENST00000413442 C15orf40Q8WUR7 153 aa5.08□□□□□ -1.6
USP54-202ENST00000413442 IL1F10Q8WWZ1 152 aa5.08□□□□□ -1.6
USP54-202ENST00000413442 ACOT12Q8WYK0 555 aa5.08□□□□□ -1.6
USP54-202ENST00000413442 S100A16Q96FQ6 103 aaKnown RBP5.08□□□□□ -1.6
USP54-202ENST00000413442 ARHGAP5-AS1Q96IT6 56 aa5.08□□□□□ -1.6
USP54-202ENST00000413442 TSNAXQ99598 290 aaKnown RBP5.08□□□□□ -1.6
USP54-202ENST00000413442 ZNF251Q9BRH9 671 aa5.08□□□□□ -1.6
USP54-202ENST00000413442 NICN1Q9BSH3 213 aa5.08□□□□□ -1.6
USP54-202ENST00000413442 MCRIP2Q9BUT9 160 aaKnown RBP5.08□□□□□ -1.6
USP54-202ENST00000413442 ATG5Q9H1Y0 275 aa5.08□□□□□ -1.6
USP54-202ENST00000413442 PLSCR3Q9NRY6 295 aa5.08□□□□□ -1.6
USP54-202ENST00000413442 AK3Q9UIJ7 227 aa5.08□□□□□ -1.6
USP54-202ENST00000413442 A0A0A6YYD4 124 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 IGHV3-43A0A0B4J1X8 118 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 SMIM31A0A1B0GVY4 71 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 TCRBV4S1A1TA0A5B7 111 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 FAM172BPA6NC97 362 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 FABP7O15540 132 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 AIREO43918 545 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 NDUFA3O95167 84 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 BRI3O95415 125 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 HLA-DRB1P01911 266 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 APOA2P02652 100 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 FCGR3AP08637 254 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 IGHV3-43DP0DP04 118 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 SDC2P34741 201 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 PPP1CCP36873 323 aaKnown RBP5.07□□□□□ -1.6
USP54-202ENST00000413442 GPR12P47775 334 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 CDX1P47902 265 aaPredicted RBP5.07□□□□□ -1.6
USP54-202ENST00000413442 ARPC4P59998 168 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 KRTAP10-3P60369 221 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 FOXE3Q13461 319 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 PLAC9Q5JTB6 97 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 HES5Q5TA89 166 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 PYHIN1Q6K0P9 492 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 SFXN4Q6P4A7 337 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 ZNF562Q6V9R5 426 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 ODF3L1Q8IXM7 274 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 STPG2Q8N412 459 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 FAM71E2Q8N5Q1 922 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 RNF152Q8N8N0 203 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 ZBTB34Q8NCN2 500 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 OR52L2PQ8NGH6 319 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 SETD6Q8TBK2 473 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 LEAP2Q969E1 77 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 NABP2Q9BQ15 211 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 CABLES2Q9BTV7 478 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 C11orf54Q9H0W9 315 aaPredicted RBP5.07□□□□□ -1.6
USP54-202ENST00000413442 ZNF581Q9P0T4 197 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 RABL2AQ9UBK7 228 aaPredicted RBP5.07□□□□□ -1.6
USP54-202ENST00000413442 RABL2BQ9UNT1 228 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 KCNK7Q9Y2U2 307 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 WASHC3Q9Y3C0 194 aa5.07□□□□□ -1.6
USP54-202ENST00000413442 FBN3Q75N90 2809 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 SAA2-SAA4A0A096LPE2 208 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 A0A1W2PPE3 182 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 NBR2O15453 112 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 XRCC3O43542 346 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 CREBL2O60519 120 aaPredicted RBP5.06□□□□□ -1.6
USP54-202ENST00000413442 IGHV3-7P01780 117 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 IGHG4P01861 327 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 TFAP2AP05549 437 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 SCTP09683 121 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 SAA2P0DJI9 122 aaPredicted RBP5.06□□□□□ -1.6
USP54-202ENST00000413442 CT45A6P0DMU7 189 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 CT45A5P0DMU8 189 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 CT45A7P0DMV0 189 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 VDAC1P21796 283 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 CD24P25063 80 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 PAX6P26367 422 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 MYCNOSP40205 109 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 THBS3P49746 956 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 CRIP2P52943 208 aaPredicted RBP5.06□□□□□ -1.6
USP54-202ENST00000413442 CLDN12P56749 244 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 ACTBP60709 375 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 DCTN2Q13561 401 aaKnown RBP5.06□□□□□ -1.6
USP54-202ENST00000413442 DIAPH2-AS1Q14236 149 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 C5orf64Q2M2E5 130 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 ZNF260Q3ZCT1 412 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 AKIRIN2Q53H80 203 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 CXorf66Q5JRM2 361 aaPredicted RBP5.06□□□□□ -1.6
USP54-202ENST00000413442 C9orf152Q5JTZ5 239 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 FAM209BQ5JX69 171 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 OR10V1Q8NGI7 309 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 FLYWCH2Q96CP2 140 aaKnown RBP5.06□□□□□ -1.6
USP54-202ENST00000413442 R3HDM4Q96D70 268 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 YIPF6Q96EC8 236 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 RCC1LQ96I51 464 aaKnown RBP5.06□□□□□ -1.6
USP54-202ENST00000413442 UBE2E2Q96LR5 201 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 BCL7BQ9BQE9 202 aa5.06□□□□□ -1.6
USP54-202ENST00000413442 GINS4Q9BRT9 223 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms