RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 HABP2Q14520 560 aaPredicted RBP18.27■□□□□ 0.52
SHMT1-202ENST00000352886 KRBOX4Q5JUW0 171 aa18.27■□□□□ 0.52
SHMT1-202ENST00000352886 SPANXN5Q5MJ07 72 aa18.27■□□□□ 0.52
SHMT1-202ENST00000352886 ZNF525Q8N782 197 aa18.27■□□□□ 0.52
SHMT1-202ENST00000352886 TPRX1Q8N7U7 411 aa18.27■□□□□ 0.52
SHMT1-202ENST00000352886 ZBTB34Q8NCN2 500 aa18.27■□□□□ 0.52
SHMT1-202ENST00000352886 NINJ1Q92982 152 aa18.27■□□□□ 0.52
SHMT1-202ENST00000352886 TAAR6Q96RI8 345 aa18.27■□□□□ 0.52
SHMT1-202ENST00000352886 MMP24Q9Y5R2 645 aa18.27■□□□□ 0.52
SHMT1-202ENST00000352886 IGHV2OR16-5A0A0B4J2B6 119 aa18.27■□□□□ 0.51
SHMT1-202ENST00000352886 MT-ND4LP03901 98 aa18.27■□□□□ 0.51
SHMT1-202ENST00000352886 ARG1P05089 322 aa18.27■□□□□ 0.51
SHMT1-202ENST00000352886 RPL30P62888 115 aaKnown RBP18.27■□□□□ 0.51
SHMT1-202ENST00000352886 PRR7Q8TB68 274 aa18.27■□□□□ 0.51
SHMT1-202ENST00000352886 RBMXL1Q96E39 390 aaKnown RBP18.27■□□□□ 0.51
SHMT1-202ENST00000352886 PTPRBP23467 1997 aa18.26■□□□□ 0.51
SHMT1-202ENST00000352886 AHRRA9YTQ3 701 aa18.26■□□□□ 0.51
SHMT1-202ENST00000352886 HBE1P02100 147 aa18.26■□□□□ 0.51
SHMT1-202ENST00000352886 SRP19P09132 144 aaKnown RBP18.26■□□□□ 0.51
SHMT1-202ENST00000352886 TUBG1P23258 451 aa18.26■□□□□ 0.51
SHMT1-202ENST00000352886 RAB2AP61019 212 aa18.26■□□□□ 0.51
SHMT1-202ENST00000352886 RAB5BP61020 215 aa18.26■□□□□ 0.51
SHMT1-202ENST00000352886 UBE2KP61086 200 aa18.26■□□□□ 0.51
SHMT1-202ENST00000352886 HBG1P69891 147 aa18.26■□□□□ 0.51
SHMT1-202ENST00000352886 HBG2P69892 147 aa18.26■□□□□ 0.51
SHMT1-202ENST00000352886 COL10A1Q03692 680 aa18.26■□□□□ 0.51
SHMT1-202ENST00000352886 ICAM4Q14773 271 aa18.26■□□□□ 0.51
SHMT1-202ENST00000352886 LILRB2Q8N423 598 aa18.26■□□□□ 0.51
SHMT1-202ENST00000352886 STARD4Q96DR4 205 aa18.26■□□□□ 0.51
SHMT1-202ENST00000352886 ZNF71Q9NQZ8 489 aaPredicted RBP18.26■□□□□ 0.51
SHMT1-202ENST00000352886 TUBG2Q9NRH3 451 aa18.26■□□□□ 0.51
SHMT1-202ENST00000352886 PROCRQ9UNN8 238 aa18.26■□□□□ 0.51
SHMT1-202ENST00000352886 CNOT1A5YKK6 2376 aaKnown RBP18.26■□□□□ 0.51
SHMT1-202ENST00000352886 A0A1W2PPE2 198 aa18.25■□□□□ 0.51
SHMT1-202ENST00000352886 SCAF4O95104 1147 aaKnown RBP18.25■□□□□ 0.51
SHMT1-202ENST00000352886 PTAFRP25105 342 aa18.25■□□□□ 0.51
SHMT1-202ENST00000352886 GLIPR1P48060 266 aa18.25■□□□□ 0.51
SHMT1-202ENST00000352886 ZNF816Q0VGE8 651 aaPredicted RBP18.25■□□□□ 0.51
SHMT1-202ENST00000352886 SMIM21Q3B7S5 101 aa18.25■□□□□ 0.51
SHMT1-202ENST00000352886 FAM209BQ5JX69 171 aa18.25■□□□□ 0.51
SHMT1-202ENST00000352886 CLDND2Q8NHS1 167 aa18.25■□□□□ 0.51
SHMT1-202ENST00000352886 HIPK2Q9H2X6 1198 aa18.25■□□□□ 0.51
SHMT1-202ENST00000352886 UNKLQ9H9P5 680 aaKnown RBP18.25■□□□□ 0.51
SHMT1-202ENST00000352886 KRASP01116 189 aa18.25■□□□□ 0.51
SHMT1-202ENST00000352886 FBP1P09467 338 aa18.25■□□□□ 0.51
SHMT1-202ENST00000352886 SSTR5P35346 364 aa18.25■□□□□ 0.51
SHMT1-202ENST00000352886 G6PCP35575 357 aa18.25■□□□□ 0.51
SHMT1-202ENST00000352886 LINC00587B1AMM8 73 aa18.24■□□□□ 0.51
SHMT1-202ENST00000352886 EIF4EBP1Q13541 118 aaPredicted RBP18.24■□□□□ 0.51
SHMT1-202ENST00000352886 RNF212Q495C1 297 aa18.24■□□□□ 0.51
SHMT1-202ENST00000352886 ZNF506Q5JVG8 444 aa18.24■□□□□ 0.51
SHMT1-202ENST00000352886 MBNL2Q5VZF2 373 aaKnown RBP18.24■□□□□ 0.51
SHMT1-202ENST00000352886 BHLHA15Q7RTS1 189 aaPredicted RBP18.24■□□□□ 0.51
SHMT1-202ENST00000352886 RPRMQ9NS64 109 aa18.24■□□□□ 0.51
SHMT1-202ENST00000352886 BOD1L1Q8NFC6 3051 aa18.24■□□□□ 0.51
SHMT1-202ENST00000352886 C1orf196B1AJZ1 125 aa18.24■□□□□ 0.51
SHMT1-202ENST00000352886 FAM90A26D6RGX4 464 aa18.24■□□□□ 0.51
SHMT1-202ENST00000352886 CGAP01215 116 aa18.24■□□□□ 0.51
SHMT1-202ENST00000352886 TNFRSF9Q07011 255 aa18.24■□□□□ 0.51
SHMT1-202ENST00000352886 BTNL3Q6UXE8 466 aa18.24■□□□□ 0.51
SHMT1-202ENST00000352886 FAM24BQ8N5W8 94 aa18.24■□□□□ 0.51
SHMT1-202ENST00000352886 OR13A1Q8NGR1 328 aa18.24■□□□□ 0.51
SHMT1-202ENST00000352886 VSIRQ9H7M9 311 aa18.24■□□□□ 0.51
SHMT1-202ENST00000352886 OR5H1A6NKK0 313 aa18.23■□□□□ 0.51
SHMT1-202ENST00000352886 HSPB1P04792 205 aaKnown RBP18.23■□□□□ 0.51
SHMT1-202ENST00000352886 CATR1Q13166 79 aa18.23■□□□□ 0.51
SHMT1-202ENST00000352886 CYB561D1Q8N8Q1 229 aa18.23■□□□□ 0.51
SHMT1-202ENST00000352886 TOLLIPQ9H0E2 274 aa18.23■□□□□ 0.51
SHMT1-202ENST00000352886 RBKSQ9H477 322 aa18.23■□□□□ 0.51
SHMT1-202ENST00000352886 IGHV3-43A0A0B4J1X8 118 aa18.23■□□□□ 0.51
SHMT1-202ENST00000352886 H3BQ15 152 aa18.23■□□□□ 0.51
SHMT1-202ENST00000352886 IFNL4K9M1U5 179 aa18.23■□□□□ 0.51
SHMT1-202ENST00000352886 IGHV3-43DP0DP04 118 aa18.23■□□□□ 0.51
SHMT1-202ENST00000352886 LRRC75BQ2VPJ9 315 aa18.23■□□□□ 0.51
SHMT1-202ENST00000352886 LRRC29Q8WV35 223 aa18.23■□□□□ 0.51
SHMT1-202ENST00000352886 TCTEX1D2Q8WW35 142 aa18.23■□□□□ 0.51
SHMT1-202ENST00000352886 DOCK11Q5JSL3 2073 aa18.22■□□□□ 0.51
SHMT1-202ENST00000352886 S1PR2O95136 353 aa18.22■□□□□ 0.51
SHMT1-202ENST00000352886 CLDN1O95832 211 aa18.22■□□□□ 0.51
SHMT1-202ENST00000352886 P2RY6Q15077 328 aa18.22■□□□□ 0.51
SHMT1-202ENST00000352886 SEM1Q6ZVN7 128 aa18.22■□□□□ 0.51
SHMT1-202ENST00000352886 RFESDQ8TAC1 157 aa18.22■□□□□ 0.51
SHMT1-202ENST00000352886 PSMG3Q9BT73 122 aaPredicted RBP18.22■□□□□ 0.51
SHMT1-202ENST00000352886 TRAV1-1A0A0B4J248 108 aa18.22■□□□□ 0.51
SHMT1-202ENST00000352886 hCG_1809904A0A1W2PP81 198 aa18.22■□□□□ 0.51
SHMT1-202ENST00000352886 A0A1W2PR64 198 aa18.22■□□□□ 0.51
SHMT1-202ENST00000352886 A0A1W2PRV1 198 aa18.22■□□□□ 0.51
SHMT1-202ENST00000352886 C17orf98A8MV24 154 aa18.22■□□□□ 0.51
SHMT1-202ENST00000352886 BRWD1-AS2P59051 145 aa18.22■□□□□ 0.51
SHMT1-202ENST00000352886 ALKBH2Q6NS38 261 aa18.22■□□□□ 0.51
SHMT1-202ENST00000352886 CD177Q8N6Q3 437 aa18.22■□□□□ 0.51
SHMT1-202ENST00000352886 OR2Z1Q8NG97 314 aa18.22■□□□□ 0.51
SHMT1-202ENST00000352886 HSPB7Q9UBY9 170 aa18.22■□□□□ 0.51
SHMT1-202ENST00000352886 ODAMA1E959 279 aa18.21■□□□□ 0.51
SHMT1-202ENST00000352886 PPIHO43447 177 aaKnown RBP18.21■□□□□ 0.51
SHMT1-202ENST00000352886 RAB5AP20339 215 aa18.21■□□□□ 0.51
SHMT1-202ENST00000352886 MSMO1Q15800 293 aa18.21■□□□□ 0.51
SHMT1-202ENST00000352886 OR8G2PQ6IF36 304 aa18.21■□□□□ 0.51
SHMT1-202ENST00000352886 LURAP1Q96LR2 239 aa18.21■□□□□ 0.51
SHMT1-202ENST00000352886 OR4C12Q96R67 309 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms