RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 NUDT16L1Q9BRJ7 211 aaKnown RBP9.94□□□□□ -0.82
PTPN4-201ENST00000263708 HOXA6P31267 233 aa9.94□□□□□ -0.82
PTPN4-201ENST00000263708 MRGPRGQ86SM5 289 aa9.94□□□□□ -0.82
PTPN4-201ENST00000263708 OR6X1Q8NH79 312 aa9.94□□□□□ -0.82
PTPN4-201ENST00000263708 TMEM160Q9NX00 188 aa9.94□□□□□ -0.82
PTPN4-201ENST00000263708 FRRS1LQ9P0K9 344 aa9.94□□□□□ -0.82
PTPN4-201ENST00000263708 NRXN3Q9Y4C0 1643 aa9.94□□□□□ -0.82
PTPN4-201ENST00000263708 TRAV12-3A0A0B4J271 114 aa9.94□□□□□ -0.82
PTPN4-201ENST00000263708 PARD6GQ9BYG4 376 aaPredicted RBP9.94□□□□□ -0.82
PTPN4-201ENST00000263708 CDS2O95674 445 aa9.94□□□□□ -0.82
PTPN4-201ENST00000263708 TGFAP01135 160 aa9.94□□□□□ -0.82
PTPN4-201ENST00000263708 CTSDP07339 412 aaPredicted RBP9.94□□□□□ -0.82
PTPN4-201ENST00000263708 PRR35P0CG20 571 aa9.94□□□□□ -0.82
PTPN4-201ENST00000263708 TMEM177Q53S58 311 aa9.94□□□□□ -0.82
PTPN4-201ENST00000263708 ADAD2Q8NCV1 583 aaKnown RBP9.94□□□□□ -0.82
PTPN4-201ENST00000263708 CEACAM4O75871 244 aa9.94□□□□□ -0.82
PTPN4-201ENST00000263708 PNLIPP16233 465 aa9.94□□□□□ -0.82
PTPN4-201ENST00000263708 FAM159AQ6UWV7 190 aa9.94□□□□□ -0.82
PTPN4-201ENST00000263708 CCL13Q99616 98 aa9.94□□□□□ -0.82
PTPN4-201ENST00000263708 VGLL1Q99990 258 aa9.94□□□□□ -0.82
PTPN4-201ENST00000263708 RBMY1BA6NDE4 496 aaKnown RBP9.93□□□□□ -0.82
PTPN4-201ENST00000263708 RBMY1EA6NEQ0 496 aaKnown RBP9.93□□□□□ -0.82
PTPN4-201ENST00000263708 GDF9O60383 454 aa9.93□□□□□ -0.82
PTPN4-201ENST00000263708 RBMY1DP0C7P1 496 aaKnown RBP9.93□□□□□ -0.82
PTPN4-201ENST00000263708 RBMY1A1P0DJD3 496 aaKnown RBP9.93□□□□□ -0.82
PTPN4-201ENST00000263708 RBMY1CP0DJD4 496 aa9.93□□□□□ -0.82
PTPN4-201ENST00000263708 NUTF2P61970 127 aaKnown RBP9.93□□□□□ -0.82
PTPN4-201ENST00000263708 NXT2Q9NPJ8 142 aaKnown RBP9.93□□□□□ -0.82
PTPN4-201ENST00000263708 IGKV3D-20A0A0C4DH25 116 aa9.93□□□□□ -0.82
PTPN4-201ENST00000263708 SOCS1O15524 211 aa9.93□□□□□ -0.82
PTPN4-201ENST00000263708 ACVR1Q04771 509 aa9.93□□□□□ -0.82
PTPN4-201ENST00000263708 LINC00596Q86U02 117 aa9.93□□□□□ -0.82
PTPN4-201ENST00000263708 OR2V2Q96R30 315 aa9.93□□□□□ -0.82
PTPN4-201ENST00000263708 TNFRSF18Q9Y5U5 241 aa9.93□□□□□ -0.82
PTPN4-201ENST00000263708 PLPP2O43688 288 aa9.93□□□□□ -0.82
PTPN4-201ENST00000263708 OR2H1Q9GZK4 316 aa9.93□□□□□ -0.82
PTPN4-201ENST00000263708 PXMP4Q9Y6I8 212 aa9.93□□□□□ -0.82
PTPN4-201ENST00000263708 ZNF688P0C7X2 276 aa9.93□□□□□ -0.82
PTPN4-201ENST00000263708 RBM11P57052 281 aaKnown RBP9.93□□□□□ -0.82
PTPN4-201ENST00000263708 CBLN2Q8IUK8 224 aa9.93□□□□□ -0.82
PTPN4-201ENST00000263708 TOGARAM1Q9Y4F4 1720 aa9.93□□□□□ -0.82
PTPN4-201ENST00000263708 SAA1P0DJI8 122 aaPredicted RBP9.93□□□□□ -0.82
PTPN4-201ENST00000263708 C1orf185Q5T7R7 199 aa9.93□□□□□ -0.82
PTPN4-201ENST00000263708 TCRBV5S2A0A599 114 aa9.93□□□□□ -0.82
PTPN4-201ENST00000263708 ZFP36L2P47974 494 aaKnown RBP9.93□□□□□ -0.82
PTPN4-201ENST00000263708 C12orf54Q6X4T0 127 aa9.93□□□□□ -0.82
PTPN4-201ENST00000263708 EWSR1Q01844 656 aaKnown RBP eCLIP9.93□□□□□ -0.82
PTPN4-201ENST00000263708 OR5AN1Q8NGI8 311 aa9.93□□□□□ -0.82
PTPN4-201ENST00000263708 RNF133Q8WVZ7 376 aa9.93□□□□□ -0.82
PTPN4-201ENST00000263708 TFF2Q03403 129 aa9.92□□□□□ -0.82
PTPN4-201ENST00000263708 RSPO2Q6UXX9 243 aaPredicted RBP9.92□□□□□ -0.82
PTPN4-201ENST00000263708 LINC00615Q96LM1 132 aaPredicted RBP9.92□□□□□ -0.82
PTPN4-201ENST00000263708 DUX3Q96PT4 197 aa9.92□□□□□ -0.82
PTPN4-201ENST00000263708 SIRT7Q9NRC8 400 aa9.92□□□□□ -0.82
PTPN4-201ENST00000263708 CTXND1A0A1B0GTU2 59 aa9.92□□□□□ -0.82
PTPN4-201ENST00000263708 CNTFRP26992 372 aa9.92□□□□□ -0.82
PTPN4-201ENST00000263708 TMPRSS3P57727 454 aa9.92□□□□□ -0.82
PTPN4-201ENST00000263708 HIST1H1AQ02539 215 aaPredicted RBP9.92□□□□□ -0.82
PTPN4-201ENST00000263708 LINC00862A6NCI5 91 aa9.92□□□□□ -0.82
PTPN4-201ENST00000263708 AMY1AP04745 511 aa9.92□□□□□ -0.82
PTPN4-201ENST00000263708 RPL27AP46776 148 aaKnown RBP9.92□□□□□ -0.82
PTPN4-201ENST00000263708 ARF6P62330 175 aa9.92□□□□□ -0.82
PTPN4-201ENST00000263708 LYZL2Q7Z4W2 148 aa9.92□□□□□ -0.82
PTPN4-201ENST00000263708 PDFQ9HBH1 243 aa9.92□□□□□ -0.82
PTPN4-201ENST00000263708 IGHV1OR21-1A0A087WYE8 117 aa9.92□□□□□ -0.82
PTPN4-201ENST00000263708 UBE2DNLQ8IWF7 75 aa9.92□□□□□ -0.82
PTPN4-201ENST00000263708 SPOCK3Q9BQ16 436 aa9.92□□□□□ -0.82
PTPN4-201ENST00000263708 LINC00869P0C866 280 aa9.92□□□□□ -0.82
PTPN4-201ENST00000263708 GTF3C1Q12789 2109 aa9.92□□□□□ -0.82
PTPN4-201ENST00000263708 TCRBV16S1A1N1A0A5B0 115 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 LEPROTL1O95214 131 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 SMIM13P0DJ93 91 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 SHISA5Q8N114 240 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 OR5A1Q8NGJ0 315 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 SPAARA0A1B0GVQ0 90 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 C1QTNF9BB2RNN3 333 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 PITX3O75364 302 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 AKIP1Q9NQ31 210 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 NEU3Q9UQ49 428 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 CACNA1DQ01668 2161 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 FOCADQ5VW36 1801 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 NTN1O95631 604 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 MDKP21741 143 aaPredicted RBP9.91□□□□□ -0.82
PTPN4-201ENST00000263708 EFNB2P52799 333 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 PGLYRP3Q96LB9 341 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 IL20Q9NYY1 176 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 WIPI2Q9Y4P8 454 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 ZNF646O15015 1829 aaPredicted RBP9.91□□□□□ -0.82
PTPN4-201ENST00000263708 IGHV3-66A0A0C4DH42 116 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 LDLRAD4O15165 306 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 CELA2BP08218 269 aaPredicted RBP9.91□□□□□ -0.82
PTPN4-201ENST00000263708 RIMKLAQ8IXN7 391 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 RAB33BQ9H082 229 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 MIOXQ9UGB7 285 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 NRAPQ86VF7 1730 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 C17orf51A8MQB3 221 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 FCARP24071 287 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 C9orf50Q5SZB4 431 aa9.91□□□□□ -0.82
PTPN4-201ENST00000263708 GMPPAQ96IJ6 420 aaPredicted RBP9.91□□□□□ -0.82
PTPN4-201ENST00000263708 KMT2EQ8IZD2 1858 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms