RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 HIST1H2BCP62807 126 aa15.78■□□□□ 0.12
CPSF3-201ENST00000238112 NKX6-1P78426 367 aaPredicted RBP15.78■□□□□ 0.12
CPSF3-201ENST00000238112 TNFRSF9Q07011 255 aa15.78■□□□□ 0.12
CPSF3-201ENST00000238112 HIST2H2BEQ16778 126 aa15.78■□□□□ 0.12
CPSF3-201ENST00000238112 HIST2H2BFQ5QNW6 126 aaPredicted RBP15.78■□□□□ 0.12
CPSF3-201ENST00000238112 HIST1H2BHQ93079 126 aa15.78■□□□□ 0.12
CPSF3-201ENST00000238112 GALMQ96C23 342 aa15.78■□□□□ 0.12
CPSF3-201ENST00000238112 HIST1H2BNQ99877 126 aa15.78■□□□□ 0.12
CPSF3-201ENST00000238112 HIST1H2BMQ99879 126 aa15.78■□□□□ 0.12
CPSF3-201ENST00000238112 RBKSQ9H477 322 aa15.78■□□□□ 0.12
CPSF3-201ENST00000238112 TMEM30CPA0ZSE6 113 aa15.77■□□□□ 0.12
CPSF3-201ENST00000238112 MSMO1Q15800 293 aa15.77■□□□□ 0.12
CPSF3-201ENST00000238112 SLC25A40Q8TBP6 338 aa15.77■□□□□ 0.12
CPSF3-201ENST00000238112 OR2D2Q9H210 308 aa15.77■□□□□ 0.12
CPSF3-201ENST00000238112 SDF2L1Q9HCN8 221 aa15.77■□□□□ 0.12
CPSF3-201ENST00000238112 SLC39A9Q9NUM3 307 aa15.77■□□□□ 0.12
CPSF3-201ENST00000238112 SPRR3Q9UBC9 169 aa15.77■□□□□ 0.12
CPSF3-201ENST00000238112 ZDBF2Q9HCK1 2354 aa15.77■□□□□ 0.12
CPSF3-201ENST00000238112 MED12LQ86YW9 2145 aa15.77■□□□□ 0.11
CPSF3-201ENST00000238112 TRAV20A0A0B4J274 112 aa15.77■□□□□ 0.11
CPSF3-201ENST00000238112 LNP1A1A4G5 178 aa15.77■□□□□ 0.11
CPSF3-201ENST00000238112 IFITM10A6NMD0 228 aa15.77■□□□□ 0.11
CPSF3-201ENST00000238112 CEBPDP49716 269 aaPredicted RBP15.77■□□□□ 0.11
CPSF3-201ENST00000238112 TGFBR3Q03167 851 aa15.77■□□□□ 0.11
CPSF3-201ENST00000238112 GABRA6Q16445 453 aa15.77■□□□□ 0.11
CPSF3-201ENST00000238112 ALKBH6Q3KRA9 238 aa15.77■□□□□ 0.11
CPSF3-201ENST00000238112 TMEM14EPQ6UXP3 125 aa15.77■□□□□ 0.11
CPSF3-201ENST00000238112 ZBTB34Q8NCN2 500 aa15.77■□□□□ 0.11
CPSF3-201ENST00000238112 LHX4Q969G2 390 aa15.77■□□□□ 0.11
CPSF3-201ENST00000238112 ZNF737O75373 536 aa15.76■□□□□ 0.11
CPSF3-201ENST00000238112 KRASP01116 189 aa15.76■□□□□ 0.11
CPSF3-201ENST00000238112 IL2RGP31785 369 aa15.76■□□□□ 0.11
CPSF3-201ENST00000238112 OR3A1P47881 315 aa15.76■□□□□ 0.11
CPSF3-201ENST00000238112 RND2P52198 227 aa15.76■□□□□ 0.11
CPSF3-201ENST00000238112 OR2B11Q5JQS5 317 aa15.76■□□□□ 0.11
CPSF3-201ENST00000238112 SPNS3Q6ZMD2 512 aa15.76■□□□□ 0.11
CPSF3-201ENST00000238112 OR1L1Q8NH94 360 aa15.76■□□□□ 0.11
CPSF3-201ENST00000238112 TIMM9Q9Y5J7 89 aa15.76■□□□□ 0.11
CPSF3-201ENST00000238112 FAM186AA6NE01 2351 aa15.76■□□□□ 0.11
CPSF3-201ENST00000238112 TMEM210A6NLX4 147 aa15.76■□□□□ 0.11
CPSF3-201ENST00000238112 SEC14L6B5MCN3 397 aa15.76■□□□□ 0.11
CPSF3-201ENST00000238112 RAMP3O60896 148 aa15.76■□□□□ 0.11
CPSF3-201ENST00000238112 IGHV2-70P01814 119 aa15.76■□□□□ 0.11
CPSF3-201ENST00000238112 HSPB7Q9UBY9 170 aa15.76■□□□□ 0.11
CPSF3-201ENST00000238112 IQCF6A8MYZ5 107 aa15.75■□□□□ 0.11
CPSF3-201ENST00000238112 PPP1R2P9O14990 202 aa15.75■□□□□ 0.11
CPSF3-201ENST00000238112 PSPNO60542 156 aa15.75■□□□□ 0.11
CPSF3-201ENST00000238112 SELEP16581 610 aa15.75■□□□□ 0.11
CPSF3-201ENST00000238112 G6PCP35575 357 aa15.75■□□□□ 0.11
CPSF3-201ENST00000238112 ZNF816Q0VGE8 651 aaPredicted RBP15.75■□□□□ 0.11
CPSF3-201ENST00000238112 ZNF808Q8N4W9 903 aaPredicted RBP15.75■□□□□ 0.11
CPSF3-201ENST00000238112 NINJ1Q92982 152 aa15.75■□□□□ 0.11
CPSF3-201ENST00000238112 GMPPAQ96IJ6 420 aaPredicted RBP15.75■□□□□ 0.11
CPSF3-201ENST00000238112 OBP2BQ9NPH6 170 aa15.75■□□□□ 0.11
CPSF3-201ENST00000238112 TGOLN2O43493 480 aa15.74■□□□□ 0.11
CPSF3-201ENST00000238112 ARG2P78540 354 aa15.74■□□□□ 0.11
CPSF3-201ENST00000238112 PSG7Q13046 419 aa15.74■□□□□ 0.11
CPSF3-201ENST00000238112 CATR1Q13166 79 aa15.74■□□□□ 0.11
CPSF3-201ENST00000238112 HNF4GQ14541 408 aa15.74■□□□□ 0.11
CPSF3-201ENST00000238112 BEND4Q6ZU67 534 aa15.74■□□□□ 0.11
CPSF3-201ENST00000238112 GUCD1Q96NT3 240 aa15.74■□□□□ 0.11
CPSF3-201ENST00000238112 CELSR3Q9NYQ7 3312 aa15.74■□□□□ 0.11
CPSF3-201ENST00000238112 C12orf77C9JDV5 145 aa15.74■□□□□ 0.11
CPSF3-201ENST00000238112 LYZL6O75951 148 aa15.74■□□□□ 0.11
CPSF3-201ENST00000238112 OPN1MWP04001 364 aa15.74■□□□□ 0.11
CPSF3-201ENST00000238112 OPN1MW2P0DN77 364 aa15.74■□□□□ 0.11
CPSF3-201ENST00000238112 OPN1MW3P0DN78 364 aa15.74■□□□□ 0.11
CPSF3-201ENST00000238112 ZNF766Q5HY98 468 aa15.74■□□□□ 0.11
CPSF3-201ENST00000238112 RNFT1Q5M7Z0 435 aa15.74■□□□□ 0.11
CPSF3-201ENST00000238112 RPP25LQ8N5L8 163 aaKnown RBP15.74■□□□□ 0.11
CPSF3-201ENST00000238112 EDARADDQ8WWZ3 215 aa15.74■□□□□ 0.11
CPSF3-201ENST00000238112 CTDSP1Q9GZU7 261 aa15.74■□□□□ 0.11
CPSF3-201ENST00000238112 OOEPA6NGQ2 149 aa15.73■□□□□ 0.11
CPSF3-201ENST00000238112 IGHV1-2P23083 117 aa15.73■□□□□ 0.11
CPSF3-201ENST00000238112 PYY3Q5JQD4 70 aa15.73■□□□□ 0.11
CPSF3-201ENST00000238112 OR52L2PQ8NGH6 319 aa15.73■□□□□ 0.11
CPSF3-201ENST00000238112 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.73■□□□□ 0.11
CPSF3-201ENST00000238112 TINAGQ9UJW2 476 aa15.73■□□□□ 0.11
CPSF3-201ENST00000238112 ELOA3CA0A087WX78 387 aaPredicted RBP15.73■□□□□ 0.11
CPSF3-201ENST00000238112 LRRC30A6NM36 301 aa15.73■□□□□ 0.11
CPSF3-201ENST00000238112 TNFSF15O95150 251 aa15.73■□□□□ 0.11
CPSF3-201ENST00000238112 TRGC1P0CF51 173 aa15.73■□□□□ 0.11
CPSF3-201ENST00000238112 RPL30P62888 115 aaKnown RBP15.73■□□□□ 0.11
CPSF3-201ENST00000238112 MEF2BQ02080 365 aaPredicted RBP15.73■□□□□ 0.11
CPSF3-201ENST00000238112 PMS2P11Q13670 270 aa15.73■□□□□ 0.11
CPSF3-201ENST00000238112 ATP6V1FQ16864 119 aa15.73■□□□□ 0.11
CPSF3-201ENST00000238112 FAM209BQ5JX69 171 aa15.73■□□□□ 0.11
CPSF3-201ENST00000238112 WDR25Q64LD2 544 aaPredicted RBP15.73■□□□□ 0.11
CPSF3-201ENST00000238112 CXorf67Q86X51 503 aaPredicted RBP15.73■□□□□ 0.11
CPSF3-201ENST00000238112 SMIM7Q9BQ49 75 aa15.73■□□□□ 0.11
CPSF3-201ENST00000238112 TMEM147Q9BVK8 224 aa15.73■□□□□ 0.11
CPSF3-201ENST00000238112 HES4Q9HCC6 221 aa15.73■□□□□ 0.11
CPSF3-201ENST00000238112 CLN8Q9UBY8 286 aa15.73■□□□□ 0.11
CPSF3-201ENST00000238112 NAT8Q9UHE5 227 aa15.73■□□□□ 0.11
CPSF3-201ENST00000238112 COLQQ9Y215 455 aaPredicted RBP15.73■□□□□ 0.11
CPSF3-201ENST00000238112 DMRT1Q9Y5R6 373 aa15.73■□□□□ 0.11
CPSF3-201ENST00000238112 MED13Q9UHV7 2174 aa15.73■□□□□ 0.11
CPSF3-201ENST00000238112 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP15.72■□□□□ 0.11
CPSF3-201ENST00000238112 IGKV1D-33P01593 117 aa15.72■□□□□ 0.11
CPSF3-201ENST00000238112 IGKV1-33P01594 117 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms