RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 ZNF826PQ6ZT77 177 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 ZNF367Q7RTV3 350 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 MRPL21Q7Z2W9 205 aaKnown RBP6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 KCNK17Q96T54 332 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 AMELYQ99218 206 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 NAA38Q9BRA0 125 aaKnown RBP6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 ATG5Q9H1Y0 275 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 TUBA4BQ9H853 241 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 KPTNQ9Y664 436 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 LOC100289279A0A1B0GTE1 492 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 TCRBV5S2A0A599 114 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 H0YL77 283 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 SNAI2O43623 268 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 HPRT1P00492 218 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 H2BFMP0C1H6 154 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 BRS3P32247 399 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 SELENOTP62341 195 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 TSPAN31Q12999 210 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 C8orf82Q6P1X6 216 aaPredicted RBP6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 LINC00114Q6XXX2 140 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 Q6ZN92 141 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 OR4S1Q8NGB4 309 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 FAM210BQ96KR6 192 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 TMEM56Q96MV1 263 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 SPXQ9BT56 116 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 OR2H1Q9GZK4 316 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 POFUT1Q9H488 388 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 SAP30LQ9HAJ7 183 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 NAGKQ9UJ70 344 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 SLC45A2Q9UMX9 530 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 TMEM56-RWDD3S4R434 201 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 A0A1W2PPK0 400 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 WNT9BO14905 357 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 SAP30O75446 220 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 PGA5P0DJD9 388 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 ANOS1P23352 680 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 PTGES3Q15185 160 aaKnown RBP6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 TEX38Q6PEX7 206 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 C17orf78Q8N4C9 275 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 ZNF611Q8N823 705 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 TMEM37Q8WXS4 190 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 PIGCQ92535 297 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 NTNG2Q96CW9 530 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 C4orf45Q96LM5 186 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 ATP6V0BQ99437 205 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 TPPP3Q9BW30 176 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 RAB1BQ9H0U4 201 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 HINT3Q9NQE9 182 aaKnown RBP6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 UBL3O95164 117 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 LY6G6DO95868 133 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 EPHA1P21709 976 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 HTR2CP28335 458 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 DAPP51397 102 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 RAP1BP61224 184 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 AESQ08117 197 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 SRSF7Q16629 238 aaKnown RBP eCLIP6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 ZNF718Q3SXZ3 478 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 DNM1P34Q6PK57 102 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 KLF14Q8TD94 323 aaPredicted RBP6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 DAZAP1Q96EP5 407 aaKnown RBP6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 IGHV3OR15-7A0A075B7D8 119 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 TGIF2-C20orf24A0A0A6YYL0 155 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 UMAD1C9J7I0 102 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 ETV2O00321 342 aaPredicted RBP6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 TAAR5O14804 337 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 CSN2P05814 226 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 CD33P20138 364 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 DUSP1P28562 367 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 THBS3P49746 956 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 DLX1P56177 255 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 LCN2P80188 198 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 PET117Q6UWS5 81 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 DRAM2Q6UX65 266 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 C1orf162Q8NEQ5 155 aaPredicted RBP6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 OR8S1Q8NH09 359 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 OR56B4Q8NH76 319 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 MITD1Q8WV92 249 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 C18orf12Q96KH6 178 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 SPACA5Q96QH8 159 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 NRIP2Q9BQI9 281 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 ELL3Q9HB65 397 aaPredicted RBP6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 FKBP11Q9NYL4 201 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 FRRS1LQ9P0K9 344 aa6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 NDRG4Q9ULP0 352 aaKnown RBP6.69□□□□□ -1.34
LIMCH1-219ENST00000514096 RNF212BA8MTL3 300 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 M0R135 149 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 CST4P01036 141 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 OR10J4P0C629 311 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 TRGC1P0CF51 173 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 SULT1A3P0DMM9 295 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 SULT1A4P0DMN0 295 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 GZMBP10144 247 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 PIPP12273 146 aaPredicted RBP6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 SRP14P37108 136 aaKnown RBP6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 TMEM33P57088 247 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 DAZAP2Q15038 168 aaPredicted RBP6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 SNAI3Q3KNW1 292 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 TMEM41BQ5BJD5 291 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 UQCC3Q6UW78 93 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 SLC26A10Q8NG04 563 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms