RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 OR51I2Q9H344 312 aa11.33□□□□□ -0.6
VPS54-203ENST00000409558 LYL1P12980 280 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 SELLP14151 372 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 NQO2P16083 231 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 COL8A2P25067 703 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 RBMS3Q6XE24 437 aaKnown RBP11.32□□□□□ -0.6
VPS54-203ENST00000409558 CYB561D1Q8N8Q1 229 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 MDS2Q8NDY4 140 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 AURKAIP1Q9NWT8 199 aaPredicted RBP11.32□□□□□ -0.6
VPS54-203ENST00000409558 TAAR3PQ9P1P4 343 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 SPTBN4Q9H254 2564 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 CHD8Q9HCK8 2581 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 J3QT63 122 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 M0R1B8 84 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 HAND1O96004 215 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 OPN1MWP04001 364 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 OPN1MW2P0DN77 364 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 OPN1MW3P0DN78 364 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 TUBG1P23258 451 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 RAB13P51153 203 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 ZNF266Q14584 549 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 ZCCHC24Q8N2G6 241 aaKnown RBP11.32□□□□□ -0.6
VPS54-203ENST00000409558 ZDHHC16Q969W1 377 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 C12orf57Q99622 126 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 LINC00470Q9BZP3 86 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 ZNF665Q9H7R5 613 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 KCNIP1Q9NZI2 227 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 SH2D1BO14796 132 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 CDS2O95674 445 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 Q3ZCU0 254 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 NECAP1Q8NC96 275 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 SLC25A31Q9H0C2 315 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 CHD3Q12873 2000 aaKnown RBP11.32□□□□□ -0.6
VPS54-203ENST00000409558 ZNF292O60281 2723 aa11.32□□□□□ -0.6
VPS54-203ENST00000409558 GCH1P30793 250 aa11.31□□□□□ -0.6
VPS54-203ENST00000409558 ARL16Q0P5N6 197 aa11.31□□□□□ -0.6
VPS54-203ENST00000409558 IL36GQ9NZH8 169 aa11.31□□□□□ -0.6
VPS54-203ENST00000409558 TAGLN2P37802 199 aaKnown RBP11.31□□□□□ -0.6
VPS54-203ENST00000409558 DRAM1Q8N682 238 aa11.31□□□□□ -0.6
VPS54-203ENST00000409558 SMCO4Q9NRQ5 59 aa11.31□□□□□ -0.6
VPS54-203ENST00000409558 GNG12Q9UBI6 72 aa11.31□□□□□ -0.6
VPS54-203ENST00000409558 MPC1Q9Y5U8 109 aa11.31□□□□□ -0.6
VPS54-203ENST00000409558 UBE2KP61086 200 aa11.31□□□□□ -0.6
VPS54-203ENST00000409558 RND3P61587 244 aa11.31□□□□□ -0.6
VPS54-203ENST00000409558 NCMAPQ5T1S8 102 aa11.31□□□□□ -0.6
VPS54-203ENST00000409558 ZZEF1O43149 2961 aa11.31□□□□□ -0.6
VPS54-203ENST00000409558 GAPDHP04406 335 aaKnown RBP11.31□□□□□ -0.6
VPS54-203ENST00000409558 ERVFRD-1P60508 538 aa11.31□□□□□ -0.6
VPS54-203ENST00000409558 FAM214BQ7L5A3 538 aa11.31□□□□□ -0.6
VPS54-203ENST00000409558 ZNRF1Q8ND25 227 aa11.31□□□□□ -0.6
VPS54-203ENST00000409558 PBDC1Q9BVG4 233 aa11.31□□□□□ -0.6
VPS54-203ENST00000409558 LINC01387J3KSC0 135 aa11.3□□□□□ -0.6
VPS54-203ENST00000409558 PTBP3O95758 552 aaKnown RBP11.3□□□□□ -0.6
VPS54-203ENST00000409558 IGKV1-39P01597 117 aa11.3□□□□□ -0.6
VPS54-203ENST00000409558 IGKV1D-39P04432 117 aa11.3□□□□□ -0.6
VPS54-203ENST00000409558 RAC2P15153 192 aa11.3□□□□□ -0.6
VPS54-203ENST00000409558 TMPRSS5Q9H3S3 457 aa11.3□□□□□ -0.6
VPS54-203ENST00000409558 PARD6AQ9NPB6 346 aa11.3□□□□□ -0.6
VPS54-203ENST00000409558 DECR2Q9NUI1 292 aa11.3□□□□□ -0.6
VPS54-203ENST00000409558 PRELID3BQ9Y3B1 194 aa11.3□□□□□ -0.6
VPS54-203ENST00000409558 OR5B21A6NL26 309 aa11.3□□□□□ -0.6
VPS54-203ENST00000409558 C1orf196B1AJZ1 125 aa11.3□□□□□ -0.6
VPS54-203ENST00000409558 SEC11BP0C7V7 166 aa11.3□□□□□ -0.6
VPS54-203ENST00000409558 KIAA0141Q14154 515 aaPredicted RBP11.3□□□□□ -0.6
VPS54-203ENST00000409558 KRTAP27-1Q3LI81 207 aa11.3□□□□□ -0.6
VPS54-203ENST00000409558 ZNF324BQ6AW86 544 aaPredicted RBP11.3□□□□□ -0.6
VPS54-203ENST00000409558 TECTBQ96PL2 329 aa11.3□□□□□ -0.6
VPS54-203ENST00000409558 SLC25A22Q9H936 323 aa11.3□□□□□ -0.6
VPS54-203ENST00000409558 WSB1Q9Y6I7 421 aa11.3□□□□□ -0.6
VPS54-203ENST00000409558 WNK2Q9Y3S1 2297 aa11.3□□□□□ -0.6
VPS54-203ENST00000409558 CD5P06127 495 aa11.3□□□□□ -0.6
VPS54-203ENST00000409558 PTAFRP25105 342 aa11.3□□□□□ -0.6
VPS54-203ENST00000409558 SULT1A1P50225 295 aa11.3□□□□□ -0.6
VPS54-203ENST00000409558 RPL30P62888 115 aaKnown RBP11.3□□□□□ -0.6
VPS54-203ENST00000409558 Q6ZR03 302 aa11.3□□□□□ -0.6
VPS54-203ENST00000409558 LYRM2Q9NU23 88 aaPredicted RBP11.3□□□□□ -0.6
VPS54-203ENST00000409558 NDRG3Q9UGV2 375 aa11.3□□□□□ -0.6
VPS54-203ENST00000409558 CARHSP1Q9Y2V2 147 aaKnown RBP11.3□□□□□ -0.6
VPS54-203ENST00000409558 CLEC18AA5D8T8 446 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 CEBPZOSA8MTT3 80 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 MLNRO43193 412 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 CECR9P0C854 216 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 SPRNQ5BIV9 151 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 FGFRL1Q8N441 504 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 CLEC18CQ8NCF0 446 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 LRRC29Q8WV35 223 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 TMEM204Q9BSN7 226 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 KPTNQ9Y664 436 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 RBFOX3A6NFN3 312 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 C12orf77C9JDV5 145 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 SYNGR2O43760 224 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 MMP9P14780 707 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 Q6ZSR3 168 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 NANPQ8TBE9 248 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 SLC35B3Q9H1N7 401 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 MAP1AP78559 2803 aaPredicted RBP11.29□□□□□ -0.6
VPS54-203ENST00000409558 PLXNB1O43157 2135 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 S1PR2O95136 353 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 IFNA17P01571 189 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 IGKV1-5P01602 117 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms