RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 RBM7Q9Y580 266 aaKnown RBP15.32■□□□□ 0.04
CLN3-206ENST00000360019 APCP25054 2843 aa15.32■□□□□ 0.04
CLN3-206ENST00000360019 GPR37O15354 613 aa15.31■□□□□ 0.04
CLN3-206ENST00000360019 YPEL1O60688 119 aa15.31■□□□□ 0.04
CLN3-206ENST00000360019 DUS4LO95620 317 aaKnown RBP15.31■□□□□ 0.04
CLN3-206ENST00000360019 PDLIM4P50479 330 aa15.31■□□□□ 0.04
CLN3-206ENST00000360019 ATP5J2P56134 94 aa15.31■□□□□ 0.04
CLN3-206ENST00000360019 DLX6P56179 175 aa15.31■□□□□ 0.04
CLN3-206ENST00000360019 SLC9A3R2Q15599 337 aa15.31■□□□□ 0.04
CLN3-206ENST00000360019 C2orf68Q2NKX9 166 aa15.31■□□□□ 0.04
CLN3-206ENST00000360019 C12orf45Q8N5I9 185 aaPredicted RBP15.31■□□□□ 0.04
CLN3-206ENST00000360019 UXS1Q8NBZ7 420 aa15.31■□□□□ 0.04
CLN3-206ENST00000360019 ST6GAL2Q96JF0 529 aa15.31■□□□□ 0.04
CLN3-206ENST00000360019 YPEL2Q96QA6 119 aa15.31■□□□□ 0.04
CLN3-206ENST00000360019 GPHA2Q96T91 129 aa15.31■□□□□ 0.04
CLN3-206ENST00000360019 GFOD1Q9NXC2 390 aa15.31■□□□□ 0.04
CLN3-206ENST00000360019 PRR13Q9NZ81 148 aa15.31■□□□□ 0.04
CLN3-206ENST00000360019 MAP1AP78559 2803 aaPredicted RBP15.31■□□□□ 0.04
CLN3-206ENST00000360019 YLPM1P49750 1951 aaKnown RBP15.31■□□□□ 0.04
CLN3-206ENST00000360019 PHF1O43189 567 aaPredicted RBP15.31■□□□□ 0.04
CLN3-206ENST00000360019 IGHV3-7P01780 117 aa15.31■□□□□ 0.04
CLN3-206ENST00000360019 SSTR2P30874 369 aa15.31■□□□□ 0.04
CLN3-206ENST00000360019 RND3P61587 244 aa15.31■□□□□ 0.04
CLN3-206ENST00000360019 CD83Q01151 205 aa15.31■□□□□ 0.04
CLN3-206ENST00000360019 SGPP2Q8IWX5 399 aa15.31■□□□□ 0.04
CLN3-206ENST00000360019 BVESQ8NE79 360 aa15.31■□□□□ 0.04
CLN3-206ENST00000360019 OR2AK2Q8NG84 335 aa15.31■□□□□ 0.04
CLN3-206ENST00000360019 MARVELD3Q96A59 401 aa15.31■□□□□ 0.04
CLN3-206ENST00000360019 PERPQ96FX8 193 aa15.31■□□□□ 0.04
CLN3-206ENST00000360019 AGMATQ9BSE5 352 aa15.31■□□□□ 0.04
CLN3-206ENST00000360019 NAA60Q9H7X0 242 aa15.31■□□□□ 0.04
CLN3-206ENST00000360019 TEX13DA0A0J9YY54 714 aaPredicted RBP15.3■□□□□ 0.04
CLN3-206ENST00000360019 PAX1P15863 534 aa15.3■□□□□ 0.04
CLN3-206ENST00000360019 CD34P28906 385 aa15.3■□□□□ 0.04
CLN3-206ENST00000360019 ZNF134P52741 427 aa15.3■□□□□ 0.04
CLN3-206ENST00000360019 ANKRD55Q3KP44 614 aa15.3■□□□□ 0.04
CLN3-206ENST00000360019 HIST2H2BCQ6DN03 193 aa15.3■□□□□ 0.04
CLN3-206ENST00000360019 LIN54Q6MZP7 749 aa15.3■□□□□ 0.04
CLN3-206ENST00000360019 HEPN1Q6WQI6 88 aa15.3■□□□□ 0.04
CLN3-206ENST00000360019 CCDC71LQ8N9Z2 235 aa15.3■□□□□ 0.04
CLN3-206ENST00000360019 LEAP2Q969E1 77 aa15.3■□□□□ 0.04
CLN3-206ENST00000360019 OR2D2Q9H210 308 aa15.3■□□□□ 0.04
CLN3-206ENST00000360019 RPUSD1Q9UJJ7 312 aaKnown RBP15.3■□□□□ 0.04
CLN3-206ENST00000360019 RNF150Q9ULK6 438 aa15.3■□□□□ 0.04
CLN3-206ENST00000360019 KCNS2Q9ULS6 477 aa15.3■□□□□ 0.04
CLN3-206ENST00000360019 ANKRD17O75179 2603 aaKnown RBP15.3■□□□□ 0.04
CLN3-206ENST00000360019 SVEP1Q4LDE5 3571 aa15.3■□□□□ 0.04
CLN3-206ENST00000360019 C22orf46C9J442 243 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 MPPED1O15442 326 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 ST8SIA5O15466 376 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 TNFSF12O43508 249 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 NFYBP25208 207 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 GNB2P62879 340 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 TBC1D26Q86UD7 250 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 OR52M1Q8NGK5 317 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 C8orf46Q8TAG6 207 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 C5orf30Q96GV9 206 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 PHB2Q99623 299 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 SSBP3Q9BWW4 388 aaPredicted RBP15.29■□□□□ 0.04
CLN3-206ENST00000360019 BARX1Q9HBU1 254 aaPredicted RBP15.29■□□□□ 0.04
CLN3-206ENST00000360019 RANGRFQ9HD47 186 aaPredicted RBP15.29■□□□□ 0.04
CLN3-206ENST00000360019 MGAT4CQ9UBM8 478 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 PSG11Q9UQ72 335 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 SLC31A2O15432 143 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 IFNA2P01563 188 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 IGHV2-5P01817 119 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 TMEM30BQ3MIR4 351 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 CMTM1Q8IZ96 169 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 C11orf42Q8N5U0 333 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 DRAM1Q8N682 238 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 ZNF645Q8N7E2 425 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 OR10A7Q8NGE5 316 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 EDARADDQ8WWZ3 215 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 GALNT14Q96FL9 552 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 ABHD14BQ96IU4 210 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 AKR1E2Q96JD6 320 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 FYTTD1Q96QD9 318 aaKnown RBP15.29■□□□□ 0.04
CLN3-206ENST00000360019 GSX2Q9BZM3 304 aa15.29■□□□□ 0.04
CLN3-206ENST00000360019 FASNP49327 2511 aaKnown RBP15.29■□□□□ 0.04
CLN3-206ENST00000360019 PGLYRP1O75594 196 aaPredicted RBP15.28■□□□□ 0.04
CLN3-206ENST00000360019 RGS11O94810 467 aa15.28■□□□□ 0.04
CLN3-206ENST00000360019 OR5AC1P0C628 307 aa15.28■□□□□ 0.04
CLN3-206ENST00000360019 SP6Q3SY56 376 aa15.28■□□□□ 0.04
CLN3-206ENST00000360019 ZNF439Q8NDP4 499 aa15.28■□□□□ 0.04
CLN3-206ENST00000360019 LY6G5BQ8NDX9 201 aa15.28■□□□□ 0.04
CLN3-206ENST00000360019 CLDND2Q8NHS1 167 aa15.28■□□□□ 0.04
CLN3-206ENST00000360019 C10orf105Q8TEF2 133 aa15.28■□□□□ 0.04
CLN3-206ENST00000360019 FAM168AQ92567 244 aa15.28■□□□□ 0.04
CLN3-206ENST00000360019 NAV2Q8IVL1 2488 aa15.27■□□□□ 0.04
CLN3-206ENST00000360019 MED13LQ71F56 2210 aa15.27■□□□□ 0.04
CLN3-206ENST00000360019 PPIAL4CA0A0B4J2A2 164 aa15.27■□□□□ 0.04
CLN3-206ENST00000360019 DBX1A6NMT0 343 aa15.27■□□□□ 0.04
CLN3-206ENST00000360019 PPIAL4GP0DN37 164 aa15.27■□□□□ 0.04
CLN3-206ENST00000360019 ESCO2Q56NI9 601 aa15.27■□□□□ 0.04
CLN3-206ENST00000360019 CT45A1Q5HYN5 189 aa15.27■□□□□ 0.04
CLN3-206ENST00000360019 CT45A3Q8NHU0 189 aa15.27■□□□□ 0.04
CLN3-206ENST00000360019 TP53RKQ96S44 253 aa15.27■□□□□ 0.04
CLN3-206ENST00000360019 IFI27L2Q9H2X8 130 aa15.27■□□□□ 0.04
CLN3-206ENST00000360019 ARHGAP32A7KAX9 2087 aa15.27■□□□□ 0.03
CLN3-206ENST00000360019 C3orf85A0A1B0GTC6 90 aa15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 88.9 ms