RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 RNF126Q9BV68 326 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 TOLLIPQ9H0E2 274 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 FAM234AQ9H0X4 552 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 RNF150Q9ULK6 438 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 TMED3Q9Y3Q3 217 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 TMEM56-RWDD3S4R434 201 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 IGHV1-69-2A0A0G2JMI3 117 aa11.12□□□□□ -0.63
HMGB1-202ENST00000339872 RNF222A6NCQ9 220 aa11.12□□□□□ -0.63
HMGB1-202ENST00000339872 KCNAB3O43448 404 aa11.12□□□□□ -0.63
HMGB1-202ENST00000339872 RP2O75695 350 aa11.12□□□□□ -0.63
HMGB1-202ENST00000339872 SCGB1D2O95969 90 aa11.12□□□□□ -0.63
HMGB1-202ENST00000339872 PET100P0DJ07 73 aa11.12□□□□□ -0.63
HMGB1-202ENST00000339872 CR1LQ2VPA4 569 aa11.12□□□□□ -0.63
HMGB1-202ENST00000339872 PRSS54Q6PEW0 395 aa11.12□□□□□ -0.63
HMGB1-202ENST00000339872 SELENOHQ8IZQ5 122 aaKnown RBP11.12□□□□□ -0.63
HMGB1-202ENST00000339872 ZNF645Q8N7E2 425 aa11.12□□□□□ -0.63
HMGB1-202ENST00000339872 INO80EQ8NBZ0 244 aaPredicted RBP11.12□□□□□ -0.63
HMGB1-202ENST00000339872 OR5AC2Q9NZP5 309 aa11.12□□□□□ -0.63
HMGB1-202ENST00000339872 A0A0D9SG52 128 aa11.12□□□□□ -0.63
HMGB1-202ENST00000339872 OR2F2O95006 317 aa11.12□□□□□ -0.63
HMGB1-202ENST00000339872 CDS2O95674 445 aa11.12□□□□□ -0.63
HMGB1-202ENST00000339872 ZNF16P17020 682 aaPredicted RBP11.12□□□□□ -0.63
HMGB1-202ENST00000339872 OR2F1Q13607 317 aa11.12□□□□□ -0.63
HMGB1-202ENST00000339872 ZNF345Q14585 488 aa11.12□□□□□ -0.63
HMGB1-202ENST00000339872 ACOT7LQ6ZUV0 252 aa11.12□□□□□ -0.63
HMGB1-202ENST00000339872 FGFRL1Q8N441 504 aa11.12□□□□□ -0.63
HMGB1-202ENST00000339872 ZNF680Q8NEM1 530 aa11.12□□□□□ -0.63
HMGB1-202ENST00000339872 CALYQ9NYX4 217 aa11.12□□□□□ -0.63
HMGB1-202ENST00000339872 GNG12Q9UBI6 72 aa11.12□□□□□ -0.63
HMGB1-202ENST00000339872 TRGV10A0A0A0MS01 117 aa11.11□□□□□ -0.63
HMGB1-202ENST00000339872 NDUFB7P17568 137 aa11.11□□□□□ -0.63
HMGB1-202ENST00000339872 AGAP20933 346 aa11.11□□□□□ -0.63
HMGB1-202ENST00000339872 OMGP23515 440 aa11.11□□□□□ -0.63
HMGB1-202ENST00000339872 RBPMSQ93062 196 aaKnown RBP11.11□□□□□ -0.63
HMGB1-202ENST00000339872 NCOR1P1Q9H4R4 102 aa11.11□□□□□ -0.63
HMGB1-202ENST00000339872 JPT1Q9UK76 154 aa11.11□□□□□ -0.63
HMGB1-202ENST00000339872 CFDP00746 253 aaPredicted RBP11.1□□□□□ -0.63
HMGB1-202ENST00000339872 SERPINE2P07093 398 aa11.1□□□□□ -0.63
HMGB1-202ENST00000339872 EXOSC2Q13868 293 aaKnown RBP11.1□□□□□ -0.63
HMGB1-202ENST00000339872 KCNRGQ8N5I3 272 aa11.1□□□□□ -0.63
HMGB1-202ENST00000339872 OR52M1Q8NGK5 317 aa11.1□□□□□ -0.63
HMGB1-202ENST00000339872 LIN7CQ9NUP9 197 aaKnown RBP11.1□□□□□ -0.63
HMGB1-202ENST00000339872 SLC25A10Q9UBX3 287 aaPredicted RBP11.1□□□□□ -0.63
HMGB1-202ENST00000339872 PSG11Q9UQ72 335 aa11.1□□□□□ -0.63
HMGB1-202ENST00000339872 LSM5Q9Y4Y9 91 aaKnown RBP11.1□□□□□ -0.63
HMGB1-202ENST00000339872 ST8SIA5O15466 376 aa11.1□□□□□ -0.63
HMGB1-202ENST00000339872 B3GALNT1O75752 331 aa11.1□□□□□ -0.63
HMGB1-202ENST00000339872 WNT2P09544 360 aa11.1□□□□□ -0.63
HMGB1-202ENST00000339872 LYL1P12980 280 aa11.1□□□□□ -0.63
HMGB1-202ENST00000339872 SMCO1Q147U7 214 aa11.1□□□□□ -0.63
HMGB1-202ENST00000339872 C17orf58Q2M2W7 97 aa11.1□□□□□ -0.63
HMGB1-202ENST00000339872 HFEQ30201 348 aa11.1□□□□□ -0.63
HMGB1-202ENST00000339872 TCF23Q7RTU1 214 aa11.1□□□□□ -0.63
HMGB1-202ENST00000339872 SLC7A5P1Q8MH63 180 aa11.1□□□□□ -0.63
HMGB1-202ENST00000339872 OR1S1Q8NH92 325 aa11.1□□□□□ -0.63
HMGB1-202ENST00000339872 C5orf30Q96GV9 206 aa11.1□□□□□ -0.63
HMGB1-202ENST00000339872 CNTNAP3BQ96NU0 1288 aa11.1□□□□□ -0.63
HMGB1-202ENST00000339872 CNTNAP3Q9BZ76 1288 aa11.1□□□□□ -0.63
HMGB1-202ENST00000339872 DUXBA0A1W2PPF3 345 aa11.09□□□□□ -0.63
HMGB1-202ENST00000339872 KANTRA0A1W2PQU2 76 aa11.09□□□□□ -0.63
HMGB1-202ENST00000339872 RNF212BA8MTL3 300 aa11.09□□□□□ -0.63
HMGB1-202ENST00000339872 F2RL2O00254 374 aa11.09□□□□□ -0.63
HMGB1-202ENST00000339872 ADAM20O43506 726 aa11.09□□□□□ -0.63
HMGB1-202ENST00000339872 IFNA7P01567 189 aa11.09□□□□□ -0.63
HMGB1-202ENST00000339872 HTR2BP41595 481 aa11.09□□□□□ -0.63
HMGB1-202ENST00000339872 PPOXP50336 477 aa11.09□□□□□ -0.63
HMGB1-202ENST00000339872 NDUFA5Q16718 116 aa11.09□□□□□ -0.63
HMGB1-202ENST00000339872 MORN2Q502X0 79 aa11.09□□□□□ -0.63
HMGB1-202ENST00000339872 EDARADDQ8WWZ3 215 aa11.09□□□□□ -0.63
HMGB1-202ENST00000339872 IL22RA2Q969J5 263 aa11.09□□□□□ -0.63
HMGB1-202ENST00000339872 RRNAD1Q96FB5 475 aaKnown RBP11.09□□□□□ -0.63
HMGB1-202ENST00000339872 ABHD14BQ96IU4 210 aa11.09□□□□□ -0.63
HMGB1-202ENST00000339872 PLEKHF2Q9H8W4 249 aa11.09□□□□□ -0.63
HMGB1-202ENST00000339872 ARID1AO14497 2285 aa11.09□□□□□ -0.63
HMGB1-202ENST00000339872 IGHV3-7P01780 117 aa11.09□□□□□ -0.63
HMGB1-202ENST00000339872 MBPP02686 304 aaPredicted RBP11.09□□□□□ -0.63
HMGB1-202ENST00000339872 CGB3P0DN86 165 aa11.09□□□□□ -0.63
HMGB1-202ENST00000339872 CGB7P0DN87 165 aa11.09□□□□□ -0.63
HMGB1-202ENST00000339872 LOXL3P58215 753 aa11.09□□□□□ -0.63
HMGB1-202ENST00000339872 LYPD2Q6UXB3 125 aa11.09□□□□□ -0.63
HMGB1-202ENST00000339872 BTNL3Q6UXE8 466 aa11.09□□□□□ -0.63
HMGB1-202ENST00000339872 ZBTB34Q8NCN2 500 aa11.09□□□□□ -0.63
HMGB1-202ENST00000339872 RAB9BQ9NP90 201 aa11.09□□□□□ -0.63
HMGB1-202ENST00000339872 KBTBD11-OT1A0A1B0GTJ5 212 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 LYNX1G3V0Z9 82 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 BCL2L11O43521 198 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 YPEL1O60688 119 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 DEDDO75618 318 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 RLN2P04090 185 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 LYNX1P0DP58 116 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 VDAC1P21796 283 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 NUP62P37198 522 aaPredicted RBP11.08□□□□□ -0.64
HMGB1-202ENST00000339872 YPEL2Q96QA6 119 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 SPIN2AQ99865 258 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 SPIN2BQ9BPZ2 258 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 CBLN4Q9NTU7 201 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 CLN8Q9UBY8 286 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 UBQLN2Q9UHD9 624 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 IGSF10Q6WRI0 2623 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 USP24Q9UPU5 2620 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms