RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 U3KQK5 164 aa13.03□□□□□ -0.32
SHKBP1-215ENST00000597649 TMEM272A0A1B0GTI8 110 aa13.02□□□□□ -0.33
SHKBP1-215ENST00000597649 SMIM31A0A1B0GVY4 71 aa13.02□□□□□ -0.33
SHKBP1-215ENST00000597649 IGLV1-47P01700 117 aa13.02□□□□□ -0.33
SHKBP1-215ENST00000597649 NHLRC4P0CG21 123 aaPredicted RBP13.02□□□□□ -0.33
SHKBP1-215ENST00000597649 SNRPBP14678 240 aaKnown RBP13.02□□□□□ -0.33
SHKBP1-215ENST00000597649 SOX6P35712 828 aa13.02□□□□□ -0.33
SHKBP1-215ENST00000597649 GDNFP39905 211 aa13.02□□□□□ -0.33
SHKBP1-215ENST00000597649 RPS27AP62979 156 aaKnown RBP13.02□□□□□ -0.33
SHKBP1-215ENST00000597649 SPCS2Q15005 226 aa13.02□□□□□ -0.33
SHKBP1-215ENST00000597649 PAN3Q58A45 887 aaKnown RBP13.02□□□□□ -0.33
SHKBP1-215ENST00000597649 UTF1Q5T230 341 aa13.02□□□□□ -0.33
SHKBP1-215ENST00000597649 PRAMEF5Q5TYX0 476 aa13.02□□□□□ -0.33
SHKBP1-215ENST00000597649 Q6P435 159 aa13.02□□□□□ -0.33
SHKBP1-215ENST00000597649 CAPSLQ8WWF8 208 aa13.02□□□□□ -0.33
SHKBP1-215ENST00000597649 DPF1Q92782 380 aa13.02□□□□□ -0.33
SHKBP1-215ENST00000597649 Q96M66 194 aa13.02□□□□□ -0.33
SHKBP1-215ENST00000597649 SPACA1Q9HBV2 294 aa13.02□□□□□ -0.33
SHKBP1-215ENST00000597649 ABRACLQ9P1F3 81 aa13.02□□□□□ -0.33
SHKBP1-215ENST00000597649 CSMD3Q7Z407 3707 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 PSMB11A5LHX3 300 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 FAM172BPA6NC97 362 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 METTL21EPA6NDL7 271 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 FAM90A10PA6NDY2 464 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 FAM90A18PA6NE21 464 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 FAM90A16PA6NEW6 464 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 FAM90A20PA6NIJ5 464 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 FAM90A7PA6NKC0 464 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 FAM90A12PA8MX19 464 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 FAM90A5PA8MXJ8 464 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 FAM90A23PA8MXZ1 464 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 H3BMQ9 156 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 LY6LH3BQJ8 138 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 FAM90A15PP0C7V4 464 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 FAM90A13PP0C7W8 464 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 FAM90A14PP0C7W9 464 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 FAM90A24PP0C7X0 464 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 LMO1P25800 156 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 BRS3P32247 399 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 SCAND1P57086 179 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 RPL23AP62750 156 aaKnown RBP13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 QRFPP83859 136 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 UNC119Q13432 240 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 C9orf152Q5JTZ5 239 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 C8orf86Q6ZUL3 223 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 NEK7Q8TDX7 302 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 NEDD4LQ96PU5 975 aa13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 LSM4Q9Y4Z0 139 aaKnown RBP13.01□□□□□ -0.33
SHKBP1-215ENST00000597649 FUOMA2VDF0 154 aa13□□□□□ -0.33
SHKBP1-215ENST00000597649 MCRIP1C9JLW8 97 aa13□□□□□ -0.33
SHKBP1-215ENST00000597649 SLC33A1O00400 549 aaPredicted RBP13□□□□□ -0.33
SHKBP1-215ENST00000597649 HSPB6O14558 160 aa13□□□□□ -0.33
SHKBP1-215ENST00000597649 MGST3O14880 152 aa13□□□□□ -0.33
SHKBP1-215ENST00000597649 SNRNP70P08621 437 aaKnown RBP13□□□□□ -0.33
SHKBP1-215ENST00000597649 ZNF182P17025 639 aaPredicted RBP13□□□□□ -0.33
SHKBP1-215ENST00000597649 RAB6AP20340 208 aa13□□□□□ -0.33
SHKBP1-215ENST00000597649 OR3A1P47881 315 aa13□□□□□ -0.33
SHKBP1-215ENST00000597649 DGCR2P98153 550 aa13□□□□□ -0.33
SHKBP1-215ENST00000597649 SUMF2Q8NBJ7 301 aa13□□□□□ -0.33
SHKBP1-215ENST00000597649 LGALS14Q8TCE9 139 aa13□□□□□ -0.33
SHKBP1-215ENST00000597649 AP3S1Q92572 193 aa13□□□□□ -0.33
SHKBP1-215ENST00000597649 PTX4Q96A99 478 aa13□□□□□ -0.33
SHKBP1-215ENST00000597649 KCTD12Q96CX2 325 aaKnown RBP13□□□□□ -0.33
SHKBP1-215ENST00000597649 NOL4LQ96MY1 436 aaPredicted RBP13□□□□□ -0.33
SHKBP1-215ENST00000597649 P2RX4Q99571 388 aa13□□□□□ -0.33
SHKBP1-215ENST00000597649 DPCDQ9BVM2 203 aaPredicted RBP13□□□□□ -0.33
SHKBP1-215ENST00000597649 TM2D1Q9BX74 207 aa13□□□□□ -0.33
SHKBP1-215ENST00000597649 LPAR5Q9H1C0 372 aa13□□□□□ -0.33
SHKBP1-215ENST00000597649 ATG5Q9H1Y0 275 aa13□□□□□ -0.33
SHKBP1-215ENST00000597649 IFT22Q9H7X7 185 aa13□□□□□ -0.33
SHKBP1-215ENST00000597649 ZNF286AQ9HBT8 521 aa13□□□□□ -0.33
SHKBP1-215ENST00000597649 PEX16Q9Y5Y5 336 aa13□□□□□ -0.33
SHKBP1-215ENST00000597649 ETV7Q9Y603 341 aa13□□□□□ -0.33
SHKBP1-215ENST00000597649 STARD9Q9P2P6 4700 aa13□□□□□ -0.33
SHKBP1-215ENST00000597649 TRAV24A0A0B4J272 114 aa12.99□□□□□ -0.33
SHKBP1-215ENST00000597649 DPPA5A6NC42 116 aa12.99□□□□□ -0.33
SHKBP1-215ENST00000597649 LEUTXA8MZ59 168 aa12.99□□□□□ -0.33
SHKBP1-215ENST00000597649 ZNF701M0R085 212 aaPredicted RBP12.99□□□□□ -0.33
SHKBP1-215ENST00000597649 LDLRAD4O15165 306 aa12.99□□□□□ -0.33
SHKBP1-215ENST00000597649 FUT3P21217 361 aa12.99□□□□□ -0.33
SHKBP1-215ENST00000597649 CDK2P24941 298 aa12.99□□□□□ -0.33
SHKBP1-215ENST00000597649 ERP29P30040 261 aaKnown RBP12.99□□□□□ -0.33
SHKBP1-215ENST00000597649 BLVRBP30043 206 aaPredicted RBP12.99□□□□□ -0.33
SHKBP1-215ENST00000597649 VEGFCP49767 419 aa12.99□□□□□ -0.33
SHKBP1-215ENST00000597649 P2RX3P56373 397 aa12.99□□□□□ -0.33
SHKBP1-215ENST00000597649 RBM39Q14498 530 aaKnown RBP12.99□□□□□ -0.33
SHKBP1-215ENST00000597649 TPTE2P1Q5T6R2 138 aa12.99□□□□□ -0.33
SHKBP1-215ENST00000597649 RAB12Q6IQ22 244 aa12.99□□□□□ -0.33
SHKBP1-215ENST00000597649 MZT2AQ6P582 158 aa12.99□□□□□ -0.33
SHKBP1-215ENST00000597649 RTN4RL2Q86UN3 420 aa12.99□□□□□ -0.33
SHKBP1-215ENST00000597649 OR56B1Q8NGI3 324 aa12.99□□□□□ -0.33
SHKBP1-215ENST00000597649 ACOT12Q8WYK0 555 aa12.99□□□□□ -0.33
SHKBP1-215ENST00000597649 DGCR14Q96DF8 476 aaKnown RBP12.99□□□□□ -0.33
SHKBP1-215ENST00000597649 DUX3Q96PT4 197 aa12.99□□□□□ -0.33
SHKBP1-215ENST00000597649 NICN1Q9BSH3 213 aa12.99□□□□□ -0.33
SHKBP1-215ENST00000597649 MCRIP2Q9BUT9 160 aaKnown RBP12.99□□□□□ -0.33
SHKBP1-215ENST00000597649 ING3Q9NXR8 418 aa12.99□□□□□ -0.33
SHKBP1-215ENST00000597649 SPATA2Q9UM82 520 aa12.99□□□□□ -0.33
SHKBP1-215ENST00000597649 UBE2J1Q9Y385 318 aaPredicted RBP12.99□□□□□ -0.33
SHKBP1-215ENST00000597649 BUB1B-PAK6H3BSN5 160 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 104 ms