RNA–Protein interactions for RNA: ENST00000569245.5

COMMD4-225, Transcript of COMM domain containing 4, human

TSL 2

Gene COMMD4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-225	ENST00000569245	SSX5	O60225	188 aa		11.77	□□□□□ -0.53
COMMD4-225	ENST00000569245	CD3G	P09693	182 aa		11.77	□□□□□ -0.53
COMMD4-225	ENST00000569245	IL7	P13232	177 aa		11.77	□□□□□ -0.53
COMMD4-225	ENST00000569245	CBX5	P45973	191 aa		11.77	□□□□□ -0.53
COMMD4-225	ENST00000569245	OR3A1	P47881	315 aa		11.77	□□□□□ -0.53
COMMD4-225	ENST00000569245	RPL15	P61313	204 aa	Known RBP	11.77	□□□□□ -0.53
COMMD4-225	ENST00000569245	PAX5	Q02548	391 aa		11.77	□□□□□ -0.53
COMMD4-225	ENST00000569245	DCTN2	Q13561	401 aa	Known RBP	11.77	□□□□□ -0.53
COMMD4-225	ENST00000569245	ARFRP1	Q13795	201 aa		11.77	□□□□□ -0.53
COMMD4-225	ENST00000569245	BRICD5	Q6PL45	260 aa		11.77	□□□□□ -0.53
COMMD4-225	ENST00000569245	BEND2	Q8NDZ0	799 aa		11.77	□□□□□ -0.53
COMMD4-225	ENST00000569245	OR13D1	Q8NGV5	346 aa		11.77	□□□□□ -0.53
COMMD4-225	ENST00000569245	OR5R1	Q8NH85	324 aa		11.77	□□□□□ -0.53
COMMD4-225	ENST00000569245	NUDCD2	Q8WVJ2	157 aa		11.77	□□□□□ -0.53
COMMD4-225	ENST00000569245	C17orf50	Q8WW18	174 aa		11.77	□□□□□ -0.53
COMMD4-225	ENST00000569245	OCSTAMP	Q9BR26	566 aa		11.77	□□□□□ -0.53
COMMD4-225	ENST00000569245	RIMS4	Q9H426	269 aa	Predicted RBP	11.77	□□□□□ -0.53
COMMD4-225	ENST00000569245	ING3	Q9NXR8	418 aa		11.77	□□□□□ -0.53
COMMD4-225	ENST00000569245	VPREB3	Q9UKI3	123 aa		11.77	□□□□□ -0.53
COMMD4-225	ENST00000569245	ANAPC10	Q9UM13	185 aa		11.77	□□□□□ -0.53
COMMD4-225	ENST00000569245	TRBV6-6	A0A0A6YYG2	114 aa		11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245		A0A1B0GUS0	222 aa		11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245	UBE2QL1	A1L167	161 aa		11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245	FUOM	A2VDF0	154 aa		11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245	LANCL1	O43813	399 aa		11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245	ORC5	O43913	435 aa		11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245	RBBP9	O75884	186 aa		11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245	NAPSA	O96009	420 aa		11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245	ARG1	P05089	322 aa		11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245	CSN2	P05814	226 aa		11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245	DLX6	P56179	175 aa		11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245	P2RX3	P56373	397 aa		11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245	MRPS15	P82914	257 aa	Known RBP	11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245	IFITM3	Q01628	133 aa		11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245	TRIQK	Q629K1	86 aa		11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245	DHRS7B	Q6IAN0	325 aa	Predicted RBP	11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245	GAPT	Q8N292	157 aa		11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245	SGMS2	Q8NHU3	365 aa		11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245	SSX3	Q99909	188 aa		11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245	CMSS1	Q9BQ75	279 aa	Known RBP	11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245	PPA2	Q9H2U2	334 aa		11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245	ABCB10	Q9NRK6	738 aa		11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245	ETAA1	Q9NY74	926 aa		11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245	ZNF107	Q9UII5	783 aa	Predicted RBP	11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245	LINC00312	Q9Y6C7	94 aa		11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245	NBEAL1	Q6ZS30	2694 aa		11.76	□□□□□ -0.53
COMMD4-225	ENST00000569245	TRGV10	A0A0A0MS01	117 aa		11.75	□□□□□ -0.53
COMMD4-225	ENST00000569245		H3BUX3	64 aa		11.75	□□□□□ -0.53
COMMD4-225	ENST00000569245	NDUFA7	O95182	113 aa		11.75	□□□□□ -0.53
COMMD4-225	ENST00000569245	RBP4	P02753	201 aa		11.75	□□□□□ -0.53
COMMD4-225	ENST00000569245	IGHV1-8	P0DP01	117 aa		11.75	□□□□□ -0.53
COMMD4-225	ENST00000569245	DTYMK	P23919	212 aa		11.75	□□□□□ -0.53
COMMD4-225	ENST00000569245	PAX6	P26367	422 aa		11.75	□□□□□ -0.53
COMMD4-225	ENST00000569245	GDNF	P39905	211 aa		11.75	□□□□□ -0.53
COMMD4-225	ENST00000569245	ACTB	P60709	375 aa		11.75	□□□□□ -0.53
COMMD4-225	ENST00000569245	RELB	Q01201	579 aa		11.75	□□□□□ -0.53
COMMD4-225	ENST00000569245	AES	Q08117	197 aa		11.75	□□□□□ -0.53
COMMD4-225	ENST00000569245	RNASE12	Q5GAN4	147 aa	Known RBP	11.75	□□□□□ -0.53
COMMD4-225	ENST00000569245	NEK7	Q8TDX7	302 aa		11.75	□□□□□ -0.53
COMMD4-225	ENST00000569245	C12orf4	Q9NQ89	552 aa		11.75	□□□□□ -0.53
COMMD4-225	ENST00000569245	TAS2R8	Q9NYW2	309 aa		11.75	□□□□□ -0.53
COMMD4-225	ENST00000569245	KLK11	Q9UBX7	282 aa		11.75	□□□□□ -0.53
COMMD4-225	ENST00000569245	MMP24	Q9Y5R2	645 aa		11.75	□□□□□ -0.53
COMMD4-225	ENST00000569245	CLPSL1	A2RUU4	121 aa		11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	HSPB6	O14558	160 aa		11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	FCGR3A	P08637	254 aa		11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	GSTT2B	P0CG30	244 aa		11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	NAT1	P18440	290 aa		11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	ERP29	P30040	261 aa	Known RBP	11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	RCVRN	P35243	200 aa		11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	LY6E	Q16553	131 aa		11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	SRSF7	Q16629	238 aa	Known RBP eCLIP	11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	LRRC75B	Q2VPJ9	315 aa		11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	PLA1A	Q53H76	456 aa		11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	KRBOX4	Q5JUW0	171 aa		11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	RSBN1	Q5VWQ0	802 aa	Predicted RBP	11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	STEAP3	Q658P3	488 aa		11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	SLC35E4	Q6ICL7	350 aa		11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	ZNF880	Q6PDB4	577 aa		11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	ZNF497	Q6ZNH5	498 aa		11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245		Q6ZS49	121 aa		11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	TCF23	Q7RTU1	214 aa		11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	HOGA1	Q86XE5	327 aa		11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	LYSMD2	Q8IV50	215 aa		11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	PLPPR1	Q8TBJ4	325 aa		11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	MRPL30	Q8TCC3	161 aa	Known RBP	11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	DEDD2	Q8WXF8	326 aa		11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	HDHD3	Q9BSH5	251 aa	Predicted RBP	11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	GAL3ST2	Q9H3Q3	398 aa		11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	NCOR1P1	Q9H4R4	102 aa		11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	UBE2J1	Q9Y385	318 aa	Predicted RBP	11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	SESN1	Q9Y6P5	492 aa		11.74	□□□□□ -0.53
COMMD4-225	ENST00000569245	ANKRD20A5P	A0PJZ0	165 aa		11.73	□□□□□ -0.53
COMMD4-225	ENST00000569245	MEIS3P1	A6NDR6	274 aa		11.73	□□□□□ -0.53
COMMD4-225	ENST00000569245	MT-ND4	P03905	459 aa		11.73	□□□□□ -0.53
COMMD4-225	ENST00000569245	CSF1	P09603	554 aa		11.73	□□□□□ -0.53
COMMD4-225	ENST00000569245	GLIPR1	P48060	266 aa		11.73	□□□□□ -0.53
COMMD4-225	ENST00000569245	INPP1	P49441	399 aa		11.73	□□□□□ -0.53
COMMD4-225	ENST00000569245	KLF9	Q13886	244 aa	Predicted RBP	11.73	□□□□□ -0.53
COMMD4-225	ENST00000569245	ATXN7L3	Q14CW9	347 aa	Predicted RBP	11.73	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 123.8 ms