RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 HEXAP06865 529 aa13.73□□□□□ -0.21
COL4A1-204ENST00000543140 ACAA1P09110 424 aaPredicted RBP13.73□□□□□ -0.21
COL4A1-204ENST00000543140 EWSR1Q01844 656 aaKnown RBP eCLIP13.73□□□□□ -0.21
COL4A1-204ENST00000543140 HMGN3Q15651 99 aa13.73□□□□□ -0.21
COL4A1-204ENST00000543140 LRRC29Q8WV35 223 aa13.73□□□□□ -0.21
COL4A1-204ENST00000543140 ABHD17AQ96GS6 310 aa13.73□□□□□ -0.21
COL4A1-204ENST00000543140 KCNIP1Q9NZI2 227 aa13.73□□□□□ -0.21
COL4A1-204ENST00000543140 RNF150Q9ULK6 438 aa13.73□□□□□ -0.21
COL4A1-204ENST00000543140 IGSF23A1L1A6 192 aa13.72□□□□□ -0.21
COL4A1-204ENST00000543140 TUBG1P23258 451 aa13.72□□□□□ -0.21
COL4A1-204ENST00000543140 GABRA2P47869 451 aa13.72□□□□□ -0.21
COL4A1-204ENST00000543140 SULT1A2P50226 295 aa13.72□□□□□ -0.21
COL4A1-204ENST00000543140 CLINT1Q14677 625 aa13.72□□□□□ -0.21
COL4A1-204ENST00000543140 HSD17B11Q8NBQ5 300 aa13.72□□□□□ -0.21
COL4A1-204ENST00000543140 RNASE11Q8TAA1 199 aaKnown RBP13.72□□□□□ -0.21
COL4A1-204ENST00000543140 LRRC46Q96FV0 321 aa13.72□□□□□ -0.21
COL4A1-204ENST00000543140 TLNRD1Q9H1K6 362 aa13.72□□□□□ -0.21
COL4A1-204ENST00000543140 MMP26Q9NRE1 261 aa13.72□□□□□ -0.21
COL4A1-204ENST00000543140 TUBG2Q9NRH3 451 aa13.72□□□□□ -0.21
COL4A1-204ENST00000543140 FAM96BQ9Y3D0 163 aa13.72□□□□□ -0.21
COL4A1-204ENST00000543140 USF3Q68DE3 2245 aa13.72□□□□□ -0.21
COL4A1-204ENST00000543140 BORCS7-ASMTA0A0B4J1R7 106 aa13.72□□□□□ -0.21
COL4A1-204ENST00000543140 C1QTNF9BB2RNN3 333 aa13.72□□□□□ -0.21
COL4A1-204ENST00000543140 C12orf77C9JDV5 145 aa13.72□□□□□ -0.21
COL4A1-204ENST00000543140 BMP5P22003 454 aa13.72□□□□□ -0.21
COL4A1-204ENST00000543140 LMO1P25800 156 aa13.72□□□□□ -0.21
COL4A1-204ENST00000543140 COL10A1Q03692 680 aa13.72□□□□□ -0.21
COL4A1-204ENST00000543140 FOXC1Q12948 553 aa13.72□□□□□ -0.21
COL4A1-204ENST00000543140 TIMM23BQ5SRD1 257 aa13.72□□□□□ -0.21
COL4A1-204ENST00000543140 UQCC3Q6UW78 93 aa13.72□□□□□ -0.21
COL4A1-204ENST00000543140 MRGPRDQ8TDS7 321 aa13.72□□□□□ -0.21
COL4A1-204ENST00000543140 SAT2Q96F10 170 aaPredicted RBP13.72□□□□□ -0.21
COL4A1-204ENST00000543140 COQ2Q96H96 371 aa13.72□□□□□ -0.21
COL4A1-204ENST00000543140 SH3BGRL3Q9H299 93 aa13.72□□□□□ -0.21
COL4A1-204ENST00000543140 C11orf1Q9H5F2 150 aa13.72□□□□□ -0.21
COL4A1-204ENST00000543140 MKRN2OSH3BPM6 223 aa13.71□□□□□ -0.21
COL4A1-204ENST00000543140 TMEM50AO95807 157 aa13.71□□□□□ -0.21
COL4A1-204ENST00000543140 PVALBP20472 110 aaPredicted RBP13.71□□□□□ -0.21
COL4A1-204ENST00000543140 VAMP2P63027 116 aa13.71□□□□□ -0.21
COL4A1-204ENST00000543140 FAM27E3Q08E93 113 aa13.71□□□□□ -0.21
COL4A1-204ENST00000543140 SPRNQ5BIV9 151 aa13.71□□□□□ -0.21
COL4A1-204ENST00000543140 FAM180AQ6UWF9 173 aa13.71□□□□□ -0.21
COL4A1-204ENST00000543140 C22orf34Q6ZV56 151 aa13.71□□□□□ -0.21
COL4A1-204ENST00000543140 OR52L2PQ8NGH6 319 aa13.71□□□□□ -0.21
COL4A1-204ENST00000543140 GPR146Q96CH1 333 aa13.71□□□□□ -0.21
COL4A1-204ENST00000543140 MUCL1Q96DR8 90 aa13.71□□□□□ -0.21
COL4A1-204ENST00000543140 TREM1Q9NP99 234 aa13.71□□□□□ -0.21
COL4A1-204ENST00000543140 DUXBA0A1W2PPF3 345 aa13.71□□□□□ -0.21
COL4A1-204ENST00000543140 TMEM218A2RU14 115 aa13.71□□□□□ -0.21
COL4A1-204ENST00000543140 CHST1O43916 411 aa13.71□□□□□ -0.21
COL4A1-204ENST00000543140 TIMP3P35625 211 aa13.71□□□□□ -0.21
COL4A1-204ENST00000543140 GLIPR1P48060 266 aa13.71□□□□□ -0.21
COL4A1-204ENST00000543140 ID3Q02535 119 aa13.71□□□□□ -0.21
COL4A1-204ENST00000543140 SMIM21Q3B7S5 101 aa13.71□□□□□ -0.21
COL4A1-204ENST00000543140 Q6ZRG5 221 aa13.71□□□□□ -0.21
COL4A1-204ENST00000543140 DRAM1Q8N682 238 aa13.71□□□□□ -0.21
COL4A1-204ENST00000543140 GALMQ96C23 342 aa13.71□□□□□ -0.21
COL4A1-204ENST00000543140 CST7O76096 145 aa13.7□□□□□ -0.22
COL4A1-204ENST00000543140 IGKV1-39P01597 117 aa13.7□□□□□ -0.22
COL4A1-204ENST00000543140 CRYAAP02489 173 aa13.7□□□□□ -0.22
COL4A1-204ENST00000543140 IGKV1D-39P04432 117 aa13.7□□□□□ -0.22
COL4A1-204ENST00000543140 IL2RGP31785 369 aa13.7□□□□□ -0.22
COL4A1-204ENST00000543140 PJVKQ0ZLH3 352 aa13.7□□□□□ -0.22
COL4A1-204ENST00000543140 FAM169BQ8N8A8 192 aa13.7□□□□□ -0.22
COL4A1-204ENST00000543140 TP53TG5Q9Y2B4 290 aa13.7□□□□□ -0.22
COL4A1-204ENST00000543140 RFNGQ9Y644 331 aa13.7□□□□□ -0.22
COL4A1-204ENST00000543140 MED19A0JLT2 244 aaPredicted RBP13.7□□□□□ -0.22
COL4A1-204ENST00000543140 CLEC18AA5D8T8 446 aa13.7□□□□□ -0.22
COL4A1-204ENST00000543140 WRBO00258 174 aa13.7□□□□□ -0.22
COL4A1-204ENST00000543140 HBZP02008 142 aa13.7□□□□□ -0.22
COL4A1-204ENST00000543140 EGR1P18146 543 aa13.7□□□□□ -0.22
COL4A1-204ENST00000543140 FHITP49789 147 aa13.7□□□□□ -0.22
COL4A1-204ENST00000543140 SWI5Q1ZZU3 235 aa13.7□□□□□ -0.22
COL4A1-204ENST00000543140 KRBOX4Q5JUW0 171 aa13.7□□□□□ -0.22
COL4A1-204ENST00000543140 Q6ZRM9 215 aa13.7□□□□□ -0.22
COL4A1-204ENST00000543140 CD177Q8N6Q3 437 aa13.7□□□□□ -0.22
COL4A1-204ENST00000543140 TMEM217Q8N7C4 229 aa13.7□□□□□ -0.22
COL4A1-204ENST00000543140 CLEC18CQ8NCF0 446 aa13.7□□□□□ -0.22
COL4A1-204ENST00000543140 FAM57AQ8TBR7 257 aa13.7□□□□□ -0.22
COL4A1-204ENST00000543140 IL22RA2Q969J5 263 aa13.7□□□□□ -0.22
COL4A1-204ENST00000543140 DCTN5Q9BTE1 182 aa13.7□□□□□ -0.22
COL4A1-204ENST00000543140 ARV1Q9H2C2 271 aa13.7□□□□□ -0.22
COL4A1-204ENST00000543140 C1QL1O75973 258 aa13.69□□□□□ -0.22
COL4A1-204ENST00000543140 ADCYAP1P18509 176 aa13.69□□□□□ -0.22
COL4A1-204ENST00000543140 SLC35E4Q6ICL7 350 aa13.69□□□□□ -0.22
COL4A1-204ENST00000543140 CISD2Q8N5K1 135 aaKnown RBP13.69□□□□□ -0.22
COL4A1-204ENST00000543140 TMEM252Q8N6L7 170 aa13.69□□□□□ -0.22
COL4A1-204ENST00000543140 RFESDQ8TAC1 157 aa13.69□□□□□ -0.22
COL4A1-204ENST00000543140 LYRM2Q9NU23 88 aaPredicted RBP13.69□□□□□ -0.22
COL4A1-204ENST00000543140 SH3BGRL2Q9UJC5 107 aa13.69□□□□□ -0.22
COL4A1-204ENST00000543140 OOEPA6NGQ2 149 aa13.69□□□□□ -0.22
COL4A1-204ENST00000543140 ATP6V1G2-DDX39BF2Z307 99 aa13.69□□□□□ -0.22
COL4A1-204ENST00000543140 SSTR5P35346 364 aa13.69□□□□□ -0.22
COL4A1-204ENST00000543140 EDDM3AQ14507 147 aa13.69□□□□□ -0.22
COL4A1-204ENST00000543140 KRTCAP3Q53RY4 240 aa13.69□□□□□ -0.22
COL4A1-204ENST00000543140 IL34Q6ZMJ4 242 aa13.69□□□□□ -0.22
COL4A1-204ENST00000543140 ZNF808Q8N4W9 903 aaPredicted RBP13.69□□□□□ -0.22
COL4A1-204ENST00000543140 AKR1E2Q96JD6 320 aa13.69□□□□□ -0.22
COL4A1-204ENST00000543140 GINS3Q9BRX5 216 aa13.69□□□□□ -0.22
COL4A1-204ENST00000543140 PLEKHF2Q9H8W4 249 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms