RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 CYYR1Q96J86 154 aa15.26■□□□□ 0.03
CCDC88C-203ENST00000389856 SNX22Q96L94 193 aa15.26■□□□□ 0.03
CCDC88C-203ENST00000389856 PLEKHA2Q9HB19 425 aa15.26■□□□□ 0.03
CCDC88C-203ENST00000389856 NBASA2RRP1 2371 aa15.26■□□□□ 0.03
CCDC88C-203ENST00000389856 EGR1P18146 543 aa15.25■□□□□ 0.03
CCDC88C-203ENST00000389856 CCL8P80075 99 aa15.25■□□□□ 0.03
CCDC88C-203ENST00000389856 LGI3Q8N145 548 aa15.25■□□□□ 0.03
CCDC88C-203ENST00000389856 RNF141Q8WVD5 230 aa15.25■□□□□ 0.03
CCDC88C-203ENST00000389856 CYTL1Q9NRR1 136 aa15.25■□□□□ 0.03
CCDC88C-203ENST00000389856 GOSR1O95249 250 aa15.25■□□□□ 0.03
CCDC88C-203ENST00000389856 GABRA2P47869 451 aa15.25■□□□□ 0.03
CCDC88C-203ENST00000389856 RND3P61587 244 aa15.25■□□□□ 0.03
CCDC88C-203ENST00000389856 GGNBP1Q5YKI7 109 aa15.25■□□□□ 0.03
CCDC88C-203ENST00000389856 LIAT1Q6ZQX7 453 aa15.25■□□□□ 0.03
CCDC88C-203ENST00000389856 ZNF561Q8N587 486 aa15.25■□□□□ 0.03
CCDC88C-203ENST00000389856 OR5D13Q8NGL4 314 aa15.25■□□□□ 0.03
CCDC88C-203ENST00000389856 PLPPR1Q8TBJ4 325 aa15.25■□□□□ 0.03
CCDC88C-203ENST00000389856 RRNAD1Q96FB5 475 aaKnown RBP15.25■□□□□ 0.03
CCDC88C-203ENST00000389856 LINC00052Q96N35 136 aa15.25■□□□□ 0.03
CCDC88C-203ENST00000389856 RAB9BQ9NP90 201 aa15.25■□□□□ 0.03
CCDC88C-203ENST00000389856 OR5AC2Q9NZP5 309 aa15.25■□□□□ 0.03
CCDC88C-203ENST00000389856 TRAV38-1A0A0B4J264 116 aa15.24■□□□□ 0.03
CCDC88C-203ENST00000389856 OOEPA6NGQ2 149 aa15.24■□□□□ 0.03
CCDC88C-203ENST00000389856 NKX6-3A6NJ46 265 aa15.24■□□□□ 0.03
CCDC88C-203ENST00000389856 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.24■□□□□ 0.03
CCDC88C-203ENST00000389856 MGST3O14880 152 aa15.24■□□□□ 0.03
CCDC88C-203ENST00000389856 PSPNO60542 156 aa15.24■□□□□ 0.03
CCDC88C-203ENST00000389856 GAPDHP04406 335 aaKnown RBP15.24■□□□□ 0.03
CCDC88C-203ENST00000389856 CEBPDP49716 269 aaPredicted RBP15.24■□□□□ 0.03
CCDC88C-203ENST00000389856 PPOXP50336 477 aa15.24■□□□□ 0.03
CCDC88C-203ENST00000389856 OR5T2Q8NGG2 359 aa15.24■□□□□ 0.03
CCDC88C-203ENST00000389856 OR10J5Q8NHC4 309 aa15.24■□□□□ 0.03
CCDC88C-203ENST00000389856 NEUROG1Q92886 237 aa15.24■□□□□ 0.03
CCDC88C-203ENST00000389856 TOMM40LQ969M1 308 aa15.24■□□□□ 0.03
CCDC88C-203ENST00000389856 MARC2Q969Z3 335 aa15.24■□□□□ 0.03
CCDC88C-203ENST00000389856 CABLES2Q9BTV7 478 aa15.24■□□□□ 0.03
CCDC88C-203ENST00000389856 SLC5A7Q9GZV3 580 aa15.24■□□□□ 0.03
CCDC88C-203ENST00000389856 LIME1Q9H400 295 aa15.24■□□□□ 0.03
CCDC88C-203ENST00000389856 SLC2A9Q9NRM0 540 aa15.24■□□□□ 0.03
CCDC88C-203ENST00000389856 MBNL3Q9NUK0 354 aaKnown RBP15.24■□□□□ 0.03
CCDC88C-203ENST00000389856 GSKIPQ9P0R6 139 aa15.24■□□□□ 0.03
CCDC88C-203ENST00000389856 HIVEP3Q5T1R4 2406 aa15.23■□□□□ 0.03
CCDC88C-203ENST00000389856 NPIPB11E5RHQ5 1161 aa15.23■□□□□ 0.03
CCDC88C-203ENST00000389856 BET1O15155 118 aa15.23■□□□□ 0.03
CCDC88C-203ENST00000389856 DEDDO75618 318 aa15.23■□□□□ 0.03
CCDC88C-203ENST00000389856 LOXP28300 417 aaPredicted RBP15.23■□□□□ 0.03
CCDC88C-203ENST00000389856 OR3A1P47881 315 aa15.23■□□□□ 0.03
CCDC88C-203ENST00000389856 SWI5Q1ZZU3 235 aa15.23■□□□□ 0.03
CCDC88C-203ENST00000389856 KRBOX4Q5JUW0 171 aa15.23■□□□□ 0.03
CCDC88C-203ENST00000389856 TEX36Q5VZQ5 186 aa15.23■□□□□ 0.03
CCDC88C-203ENST00000389856 CD177Q8N6Q3 437 aa15.23■□□□□ 0.03
CCDC88C-203ENST00000389856 SAT2Q96F10 170 aaPredicted RBP15.23■□□□□ 0.03
CCDC88C-203ENST00000389856 C18orf12Q96KH6 178 aa15.23■□□□□ 0.03
CCDC88C-203ENST00000389856 FAM234AQ9H0X4 552 aa15.23■□□□□ 0.03
CCDC88C-203ENST00000389856 TAS2R3Q9NYW6 316 aa15.23■□□□□ 0.03
CCDC88C-203ENST00000389856 TMED3Q9Y3Q3 217 aa15.23■□□□□ 0.03
CCDC88C-203ENST00000389856 IGKV1D-17A0A075B6S4 117 aa15.22■□□□□ 0.03
CCDC88C-203ENST00000389856 DUXBA0A1W2PPF3 345 aa15.22■□□□□ 0.03
CCDC88C-203ENST00000389856 MPTX1A8MV57 137 aa15.22■□□□□ 0.03
CCDC88C-203ENST00000389856 E5RGE8 158 aa15.22■□□□□ 0.03
CCDC88C-203ENST00000389856 SIAH2O43255 324 aa15.22■□□□□ 0.03
CCDC88C-203ENST00000389856 PLAUP00749 431 aa15.22■□□□□ 0.03
CCDC88C-203ENST00000389856 PPYP01298 95 aa15.22■□□□□ 0.03
CCDC88C-203ENST00000389856 SCTP09683 121 aa15.22■□□□□ 0.03
CCDC88C-203ENST00000389856 S100GP29377 79 aa15.22■□□□□ 0.03
CCDC88C-203ENST00000389856 CD80P33681 288 aa15.22■□□□□ 0.03
CCDC88C-203ENST00000389856 S100A10P60903 97 aa15.22■□□□□ 0.03
CCDC88C-203ENST00000389856 MST1LQ2TV78 715 aa15.22■□□□□ 0.03
CCDC88C-203ENST00000389856 SPRNQ5BIV9 151 aa15.22■□□□□ 0.03
CCDC88C-203ENST00000389856 ZNF565Q8N9K5 539 aa15.22■□□□□ 0.03
CCDC88C-203ENST00000389856 SDSLQ96GA7 329 aa15.22■□□□□ 0.03
CCDC88C-203ENST00000389856 KIRREL1Q96J84 757 aa15.22■□□□□ 0.03
CCDC88C-203ENST00000389856 NCOR1P1Q9H4R4 102 aa15.22■□□□□ 0.03
CCDC88C-203ENST00000389856 ZNF665Q9H7R5 613 aa15.22■□□□□ 0.03
CCDC88C-203ENST00000389856 PRR13Q9NZ81 148 aa15.22■□□□□ 0.03
CCDC88C-203ENST00000389856 NSG2Q9Y328 171 aa15.22■□□□□ 0.03
CCDC88C-203ENST00000389856 CHD6Q8TD26 2715 aa15.22■□□□□ 0.03
CCDC88C-203ENST00000389856 C3orf80F5H4A9 247 aa15.21■□□□□ 0.03
CCDC88C-203ENST00000389856 K7EPK0 472 aa15.21■□□□□ 0.03
CCDC88C-203ENST00000389856 LGALS8O00214 317 aa15.21■□□□□ 0.03
CCDC88C-203ENST00000389856 CYB5R3P00387 301 aaPredicted RBP15.21■□□□□ 0.03
CCDC88C-203ENST00000389856 RCC1P18754 421 aaPredicted RBP15.21■□□□□ 0.03
CCDC88C-203ENST00000389856 HMGN3Q15651 99 aa15.21■□□□□ 0.03
CCDC88C-203ENST00000389856 TUSC1Q2TAM9 212 aa15.21■□□□□ 0.03
CCDC88C-203ENST00000389856 IGSF11Q5DX21 431 aa15.21■□□□□ 0.03
CCDC88C-203ENST00000389856 FAM74A1Q5RGS3 127 aa15.21■□□□□ 0.03
CCDC88C-203ENST00000389856 STUMQ69YW2 141 aa15.21■□□□□ 0.03
CCDC88C-203ENST00000389856 Q6ZPA2 131 aa15.21■□□□□ 0.03
CCDC88C-203ENST00000389856 FAM71E2Q8N5Q1 922 aa15.21■□□□□ 0.03
CCDC88C-203ENST00000389856 RAB1BQ9H0U4 201 aa15.21■□□□□ 0.03
CCDC88C-203ENST00000389856 CBLN4Q9NTU7 201 aa15.21■□□□□ 0.03
CCDC88C-203ENST00000389856 IGHV3OR15-7A0A075B7D8 119 aa15.21■□□□□ 0.02
CCDC88C-203ENST00000389856 K7N7A8 449 aa15.21■□□□□ 0.02
CCDC88C-203ENST00000389856 HSPA12AO43301 675 aa15.21■□□□□ 0.02
CCDC88C-203ENST00000389856 ZNF737O75373 536 aa15.21■□□□□ 0.02
CCDC88C-203ENST00000389856 DYSFO75923 2080 aa15.21■□□□□ 0.02
CCDC88C-203ENST00000389856 JTBO76095 146 aa15.21■□□□□ 0.02
CCDC88C-203ENST00000389856 OR5AC1P0C628 307 aa15.21■□□□□ 0.02
CCDC88C-203ENST00000389856 HKR1P10072 659 aa15.21■□□□□ 0.02
CCDC88C-203ENST00000389856 AADACP22760 399 aa15.21■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 108.2 ms