RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 H1FOOQ8IZA3 346 aaPredicted RBP16.4■□□□□ 0.22
CLN3-205ENST00000359984 MARCH1Q8TCQ1 289 aa16.4■□□□□ 0.22
CLN3-205ENST00000359984 FYTTD1Q96QD9 318 aaKnown RBP16.4■□□□□ 0.22
CLN3-205ENST00000359984 SSBP3Q9BWW4 388 aaPredicted RBP16.4■□□□□ 0.22
CLN3-205ENST00000359984 VSIG4Q9Y279 399 aa16.4■□□□□ 0.22
CLN3-205ENST00000359984 F2RL2O00254 374 aa16.39■□□□□ 0.22
CLN3-205ENST00000359984 CCL3L1P16619 93 aa16.39■□□□□ 0.22
CLN3-205ENST00000359984 CEACAM6P40199 344 aa16.39■□□□□ 0.22
CLN3-205ENST00000359984 HTD2P86397 168 aa16.39■□□□□ 0.22
CLN3-205ENST00000359984 GNMTQ14749 295 aa16.39■□□□□ 0.22
CLN3-205ENST00000359984 LTC4SQ16873 150 aa16.39■□□□□ 0.22
CLN3-205ENST00000359984 TCTE3Q8IZS6 198 aa16.39■□□□□ 0.22
CLN3-205ENST00000359984 MOB3AQ96BX8 217 aa16.39■□□□□ 0.22
CLN3-205ENST00000359984 OR2S2Q9NQN1 319 aa16.39■□□□□ 0.22
CLN3-205ENST00000359984 ZNF69Q9UC07 566 aa16.39■□□□□ 0.22
CLN3-205ENST00000359984 RPUSD1Q9UJJ7 312 aaKnown RBP16.39■□□□□ 0.22
CLN3-205ENST00000359984 NBPF19A0A087WUL8 3843 aa16.39■□□□□ 0.21
CLN3-205ENST00000359984 ANKRD17O75179 2603 aaKnown RBP16.39■□□□□ 0.21
CLN3-205ENST00000359984 IGHV3-43A0A0B4J1X8 118 aa16.39■□□□□ 0.21
CLN3-205ENST00000359984 PPYP01298 95 aa16.39■□□□□ 0.21
CLN3-205ENST00000359984 IGHV3-43DP0DP04 118 aa16.39■□□□□ 0.21
CLN3-205ENST00000359984 ZBTB25P24278 435 aa16.39■□□□□ 0.21
CLN3-205ENST00000359984 CLEC12BQ2HXU8 276 aa16.39■□□□□ 0.21
CLN3-205ENST00000359984 ESCO2Q56NI9 601 aa16.39■□□□□ 0.21
CLN3-205ENST00000359984 LRRC75A-AS1Q8N1F1 130 aa16.39■□□□□ 0.21
CLN3-205ENST00000359984 MBD6Q96DN6 1003 aa16.39■□□□□ 0.21
CLN3-205ENST00000359984 PARP12Q9H0J9 701 aaKnown RBP16.39■□□□□ 0.21
CLN3-205ENST00000359984 C22orf46C9J442 243 aa16.38■□□□□ 0.21
CLN3-205ENST00000359984 ZNF728P0DKX0 622 aa16.38■□□□□ 0.21
CLN3-205ENST00000359984 FXYD4P59646 89 aa16.38■□□□□ 0.21
CLN3-205ENST00000359984 HERV-K104P61576 105 aa16.38■□□□□ 0.21
CLN3-205ENST00000359984 ZDHHC22Q8N966 263 aa16.38■□□□□ 0.21
CLN3-205ENST00000359984 C8orf46Q8TAG6 207 aa16.38■□□□□ 0.21
CLN3-205ENST00000359984 ZNF486Q96H40 463 aaPredicted RBP16.38■□□□□ 0.21
CLN3-205ENST00000359984 DMRTB1Q96MA1 342 aa16.38■□□□□ 0.21
CLN3-205ENST00000359984 ZNF714Q96N38 554 aa16.38■□□□□ 0.21
CLN3-205ENST00000359984 FXYD6Q9H0Q3 95 aa16.38■□□□□ 0.21
CLN3-205ENST00000359984 GAL3ST2Q9H3Q3 398 aa16.38■□□□□ 0.21
CLN3-205ENST00000359984 RAB9BQ9NP90 201 aa16.38■□□□□ 0.21
CLN3-205ENST00000359984 ASH1LQ9NR48 2969 aaKnown RBP16.38■□□□□ 0.21
CLN3-205ENST00000359984 RDH8Q9NYR8 311 aa16.38■□□□□ 0.21
CLN3-205ENST00000359984 NAV2Q8IVL1 2488 aa16.38■□□□□ 0.21
CLN3-205ENST00000359984 IGHV4-61A0A0C4DH41 118 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 MMP23AO75900 390 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 RLN1P04808 185 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 FPR2P25090 351 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 PPP1CCP36873 323 aaKnown RBP16.37■□□□□ 0.21
CLN3-205ENST00000359984 DLX6P56179 175 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 LOXL3P58215 753 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 ERVFRD-1P60508 538 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 CD83Q01151 205 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 BAMBIQ13145 260 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 ZFP69Q49AA0 526 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 LY6G5BQ8NDX9 201 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 OR10V1Q8NGI7 309 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 TOMM40LQ969M1 308 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 BEX2Q9BXY8 128 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 TOLLIPQ9H0E2 274 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 IDI2-AS1Q9NZ38 188 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 GPR132Q9UNW8 380 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 OR2W1Q9Y3N9 320 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 IGKV1D-13A0A0B4J2D9 117 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 FAM172BPA6NC97 362 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 KIAA1324LA8MWY0 1029 aaPredicted RBP16.37■□□□□ 0.21
CLN3-205ENST00000359984 IGKV1-13P0DP09 117 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 ANXA7P20073 488 aaKnown RBP16.37■□□□□ 0.21
CLN3-205ENST00000359984 ZFP36P26651 326 aaKnown RBP16.37■□□□□ 0.21
CLN3-205ENST00000359984 PRAMEF5Q5TYX0 476 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 LDLRAD3Q86YD5 345 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 BEX1Q9HBH7 125 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 JPT1Q9UK76 154 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 CSMD2Q7Z408 3487 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 DOCK11Q5JSL3 2073 aa16.37■□□□□ 0.21
CLN3-205ENST00000359984 UNC79Q9P2D8 2635 aa16.36■□□□□ 0.21
CLN3-205ENST00000359984 LOC105371242A0A075B767 164 aa16.36■□□□□ 0.21
CLN3-205ENST00000359984 PPIAL4CA0A0B4J2A2 164 aa16.36■□□□□ 0.21
CLN3-205ENST00000359984 PEX14O75381 377 aa16.36■□□□□ 0.21
CLN3-205ENST00000359984 PPIAL4GP0DN37 164 aa16.36■□□□□ 0.21
CLN3-205ENST00000359984 PGAM2P15259 253 aa16.36■□□□□ 0.21
CLN3-205ENST00000359984 ECI1P42126 302 aa16.36■□□□□ 0.21
CLN3-205ENST00000359984 NINJ1Q92982 152 aa16.36■□□□□ 0.21
CLN3-205ENST00000359984 RAB39BQ96DA2 213 aa16.36■□□□□ 0.21
CLN3-205ENST00000359984 GNG12Q9UBI6 72 aa16.36■□□□□ 0.21
CLN3-205ENST00000359984 HECTD1Q9ULT8 2610 aa16.36■□□□□ 0.21
CLN3-205ENST00000359984 PI3P19957 117 aa16.35■□□□□ 0.21
CLN3-205ENST00000359984 MECP2P51608 486 aaKnown RBP16.35■□□□□ 0.21
CLN3-205ENST00000359984 UCP3P55916 312 aa16.35■□□□□ 0.21
CLN3-205ENST00000359984 SURF2Q15527 256 aaPredicted RBP16.35■□□□□ 0.21
CLN3-205ENST00000359984 UTF1Q5T230 341 aa16.35■□□□□ 0.21
CLN3-205ENST00000359984 CD276Q5ZPR3 534 aa16.35■□□□□ 0.21
CLN3-205ENST00000359984 HEPN1Q6WQI6 88 aa16.35■□□□□ 0.21
CLN3-205ENST00000359984 TMED4Q7Z7H5 227 aa16.35■□□□□ 0.21
CLN3-205ENST00000359984 SCGB3A2Q96PL1 93 aa16.35■□□□□ 0.21
CLN3-205ENST00000359984 RTBDNQ9BSG5 229 aaPredicted RBP16.35■□□□□ 0.21
CLN3-205ENST00000359984 C5orf66Q9H5L9 145 aa16.35■□□□□ 0.21
CLN3-205ENST00000359984 MORN2Q502X0 79 aa16.35■□□□□ 0.21
CLN3-205ENST00000359984 C11orf42Q8N5U0 333 aa16.35■□□□□ 0.21
CLN3-205ENST00000359984 GFOD1Q9NXC2 390 aa16.35■□□□□ 0.21
CLN3-205ENST00000359984 YPEL1O60688 119 aa16.34■□□□□ 0.21
CLN3-205ENST00000359984 VSIG10L2P0DP72 767 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms