RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 MSI2Q96DH6 328 aaKnown RBP6.26□□□□□ -1.41
LIMCH1-207ENST00000508466 RCHY1Q96PM5 261 aa6.26□□□□□ -1.41
LIMCH1-207ENST00000508466 GABRG3Q99928 467 aa6.26□□□□□ -1.41
LIMCH1-207ENST00000508466 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP6.26□□□□□ -1.41
LIMCH1-207ENST00000508466 COX11Q9Y6N1 276 aa6.26□□□□□ -1.41
LIMCH1-207ENST00000508466 IGHV3-64DA0A0J9YX35 117 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 VSTM2BA6NLU5 285 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 CRISP2P16562 243 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 FBLP22087 321 aaKnown RBP6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 NPPCP23582 126 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 PNRC1Q12796 327 aaPredicted RBP6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 SHBQ15464 509 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 MSMO1Q15800 293 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 MPV17L2Q567V2 206 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 Q56UQ5 140 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 ADPRHL1Q8NDY3 354 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 OR8B12Q8NGG6 310 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 CAPNS2Q96L46 248 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 SGCZQ96LD1 299 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 UHRF2Q96PU4 802 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 PLEKHF2Q9H8W4 249 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 PLSCR2Q9NRY7 297 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 ANXA10Q9UJ72 324 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 CLDN16Q9Y5I7 305 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 UBE2L5PA0A1B0GUS4 154 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 LNP1A1A4G5 178 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 NDUFB4O95168 129 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 SEMA4FO95754 770 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 ERGP11308 486 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 GLB1P16278 677 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 COMPP49747 757 aaPredicted RBP6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 TAS2R46P59540 309 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 SRPXP78539 464 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 PSG4Q00888 419 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 BAXQ07812 192 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 HYAL1Q12794 435 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 FOXE3Q13461 319 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 GPM6BQ13491 265 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 PLCXD3Q63HM9 321 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 TPGS2Q68CL5 300 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 SIGLECL1Q8N7X8 197 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 SCGB1C1Q8TD33 95 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 RERGQ96A58 199 aaPredicted RBP6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 ACY3Q96HD9 319 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 PMCHL2Q9BQD1 86 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 OR10A5Q9H207 317 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 GP6Q9HCN6 339 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 FGF22Q9HCT0 170 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 NAT8Q9UHE5 227 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 WASHC3Q9Y3C0 194 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 TBL2Q9Y4P3 447 aaKnown RBP6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 R4GN57 208 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 CSMD1Q96PZ7 3565 aa6.25□□□□□ -1.41
LIMCH1-207ENST00000508466 YPEL1O60688 119 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 PRRX1P54821 245 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 TFF2Q03403 129 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 PMCHL1Q16048 86 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 FAM110CQ1W6H9 321 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 VSTM2LQ96N03 204 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 YPEL2Q96QA6 119 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 FAM206AQ9NX38 181 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 CLN8Q9UBY8 286 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 WIPI2Q9Y4P8 454 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 USF3Q68DE3 2245 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 RBFOX2O43251 390 aaKnown RBP eCLIP6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 UTS2O95399 124 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 IFNA5P01569 189 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 CRYABP02511 175 aaKnown RBP6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 PATE4P0C8F1 98 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 PRB4P10163 310 aaPredicted RBP6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 TCN2P20062 427 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 DTYMKP23919 212 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 IGFBP7Q16270 282 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 TBC1D26Q86UD7 250 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 RPP25LQ8N5L8 163 aaKnown RBP6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 NKAIN3Q8N8D7 197 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 SLC38A9Q8NBW4 561 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 KIAA0100Q14667 2235 aaKnown RBP6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 C3orf85A0A1B0GTC6 90 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 C22orf46C9J442 243 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 NPIPA5E9PKD4 350 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 FCN1O00602 326 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 SRSF10O75494 262 aaKnown RBP6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 GATA2P23769 480 aaPredicted RBP6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 UQCRFS1P47985 274 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 ATP5G3P48201 142 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 TPPP2P59282 170 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 ROM1Q03395 351 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 HLA-DRB5Q30154 266 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 PRR27Q6MZM9 219 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 Q6ZRM9 215 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 LHFPL4Q7Z7J7 247 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 GCNT2Q8N0V5 402 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 CA13Q8N1Q1 262 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 GAPTQ8N292 157 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 RNF133Q8WVZ7 376 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 MOB3AQ96BX8 217 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 C20orf144Q9BQM9 153 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 CRIM1Q9NZV1 1036 aa6.24□□□□□ -1.41
LIMCH1-207ENST00000508466 NPIPA1Q9UND3 350 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms