RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 RFESDQ8TAC1 157 aa15.99■□□□□ 0.15
USP39-218ENST00000493829 IL1F10Q8WWZ1 152 aa15.99■□□□□ 0.15
USP39-218ENST00000493829 CCDC32Q9BV29 185 aa15.99■□□□□ 0.15
USP39-218ENST00000493829 MBNL3Q9NUK0 354 aaKnown RBP15.99■□□□□ 0.15
USP39-218ENST00000493829 KCNIP1Q9NZI2 227 aa15.99■□□□□ 0.15
USP39-218ENST00000493829 ONECUT1Q9UBC0 465 aa15.99■□□□□ 0.15
USP39-218ENST00000493829 LINC00312Q9Y6C7 94 aa15.99■□□□□ 0.15
USP39-218ENST00000493829 DSCAML1Q8TD84 2053 aa15.98■□□□□ 0.15
USP39-218ENST00000493829 PRRC2AP48634 2157 aaKnown RBP15.98■□□□□ 0.15
USP39-218ENST00000493829 TRBV23-1A0A0A0MS06 115 aa15.98■□□□□ 0.15
USP39-218ENST00000493829 PPIAL4CA0A0B4J2A2 164 aa15.98■□□□□ 0.15
USP39-218ENST00000493829 GSTT2P0CG29 244 aa15.98■□□□□ 0.15
USP39-218ENST00000493829 GSTT2BP0CG30 244 aa15.98■□□□□ 0.15
USP39-218ENST00000493829 PPIAL4GP0DN37 164 aa15.98■□□□□ 0.15
USP39-218ENST00000493829 ARPC4P59998 168 aa15.98■□□□□ 0.15
USP39-218ENST00000493829 ERVFRD-1P60508 538 aa15.98■□□□□ 0.15
USP39-218ENST00000493829 MEF2CQ06413 473 aaPredicted RBP15.98■□□□□ 0.15
USP39-218ENST00000493829 C6orf183Q5T699 404 aa15.98■□□□□ 0.15
USP39-218ENST00000493829 FAAP20Q6NZ36 180 aa15.98■□□□□ 0.15
USP39-218ENST00000493829 KIRREL1Q96J84 757 aa15.98■□□□□ 0.15
USP39-218ENST00000493829 CALYQ9NYX4 217 aa15.98■□□□□ 0.15
USP39-218ENST00000493829 ANAPC10Q9UM13 185 aa15.98■□□□□ 0.15
USP39-218ENST00000493829 RBMX2Q9Y388 322 aaKnown RBP15.98■□□□□ 0.15
USP39-218ENST00000493829 TRDCB7Z8K6 153 aa15.97■□□□□ 0.15
USP39-218ENST00000493829 M0QYG6 137 aa15.97■□□□□ 0.15
USP39-218ENST00000493829 SMAD7O15105 426 aaKnown RBP15.97■□□□□ 0.15
USP39-218ENST00000493829 GPR37O15354 613 aa15.97■□□□□ 0.15
USP39-218ENST00000493829 PMP2P02689 132 aa15.97■□□□□ 0.15
USP39-218ENST00000493829 CHRFAM7AQ494W8 412 aa15.97■□□□□ 0.15
USP39-218ENST00000493829 PRAMEF5Q5TYX0 476 aa15.97■□□□□ 0.15
USP39-218ENST00000493829 TOMM5Q8N4H5 51 aa15.97■□□□□ 0.15
USP39-218ENST00000493829 ZNF565Q8N9K5 539 aa15.97■□□□□ 0.15
USP39-218ENST00000493829 ARL11Q969Q4 196 aa15.97■□□□□ 0.15
USP39-218ENST00000493829 ZNF714Q96N38 554 aa15.97■□□□□ 0.15
USP39-218ENST00000493829 LPAR3Q9UBY5 353 aa15.97■□□□□ 0.15
USP39-218ENST00000493829 ANXA10Q9UJ72 324 aa15.97■□□□□ 0.15
USP39-218ENST00000493829 MALRD1Q5VYJ5 2156 aa15.97■□□□□ 0.15
USP39-218ENST00000493829 A8MXK9 166 aa15.96■□□□□ 0.15
USP39-218ENST00000493829 FABP7O15540 132 aa15.96■□□□□ 0.15
USP39-218ENST00000493829 FOXH1O75593 365 aa15.96■□□□□ 0.15
USP39-218ENST00000493829 UPK1BO75841 260 aa15.96■□□□□ 0.15
USP39-218ENST00000493829 HBZP02008 142 aa15.96■□□□□ 0.15
USP39-218ENST00000493829 CD3DP04234 171 aa15.96■□□□□ 0.15
USP39-218ENST00000493829 CSF1P09603 554 aa15.96■□□□□ 0.15
USP39-218ENST00000493829 HRH1P35367 487 aa15.96■□□□□ 0.15
USP39-218ENST00000493829 LOXL1Q08397 574 aaPredicted RBP15.96■□□□□ 0.15
USP39-218ENST00000493829 HMGN3Q15651 99 aa15.96■□□□□ 0.15
USP39-218ENST00000493829 IGSF11Q5DX21 431 aa15.96■□□□□ 0.15
USP39-218ENST00000493829 KIAA2026Q5HYC2 2103 aa15.96■□□□□ 0.15
USP39-218ENST00000493829 CD276Q5ZPR3 534 aa15.96■□□□□ 0.15
USP39-218ENST00000493829 FAM53AQ6NSI3 398 aaPredicted RBP15.96■□□□□ 0.15
USP39-218ENST00000493829 C16orf87Q6PH81 154 aa15.96■□□□□ 0.15
USP39-218ENST00000493829 LYSMD2Q8IV50 215 aa15.96■□□□□ 0.15
USP39-218ENST00000493829 CIARTQ8N365 385 aaPredicted RBP15.96■□□□□ 0.15
USP39-218ENST00000493829 MMP26Q9NRE1 261 aa15.96■□□□□ 0.15
USP39-218ENST00000493829 CR1P17927 2039 aa15.96■□□□□ 0.15
USP39-218ENST00000493829 IGHV3-43A0A0B4J1X8 118 aa15.95■□□□□ 0.14
USP39-218ENST00000493829 KIR2DS1A0A191URI9 304 aa15.95■□□□□ 0.14
USP39-218ENST00000493829 FAM172BPA6NC97 362 aa15.95■□□□□ 0.14
USP39-218ENST00000493829 ZNF736B4DX44 427 aaPredicted RBP15.95■□□□□ 0.14
USP39-218ENST00000493829 BET1O15155 118 aa15.95■□□□□ 0.14
USP39-218ENST00000493829 ECDO95905 644 aaPredicted RBP15.95■□□□□ 0.14
USP39-218ENST00000493829 IGHV3-43DP0DP04 118 aa15.95■□□□□ 0.14
USP39-218ENST00000493829 KIR2DS4P43632 304 aa15.95■□□□□ 0.14
USP39-218ENST00000493829 IFITM3Q01628 133 aa15.95■□□□□ 0.14
USP39-218ENST00000493829 PRB3Q04118 309 aaPredicted RBP15.95■□□□□ 0.14
USP39-218ENST00000493829 KIR2DS1Q14954 304 aa15.95■□□□□ 0.14
USP39-218ENST00000493829 C17orf58Q2M2W7 97 aa15.95■□□□□ 0.14
USP39-218ENST00000493829 OR4D10Q8NGI6 311 aa15.95■□□□□ 0.14
USP39-218ENST00000493829 BORCS5Q969J3 196 aa15.95■□□□□ 0.14
USP39-218ENST00000493829 GAL3ST2Q9H3Q3 398 aa15.95■□□□□ 0.14
USP39-218ENST00000493829 UBE2J1Q9Y385 318 aaPredicted RBP15.95■□□□□ 0.14
USP39-218ENST00000493829 ARHGAP32A7KAX9 2087 aa15.95■□□□□ 0.14
USP39-218ENST00000493829 DOCK11Q5JSL3 2073 aa15.95■□□□□ 0.14
USP39-218ENST00000493829 ANKRD20A5PA0PJZ0 165 aa15.95■□□□□ 0.14
USP39-218ENST00000493829 C15orf65H3BRN8 121 aa15.95■□□□□ 0.14
USP39-218ENST00000493829 SDCBPO00560 298 aaPredicted RBP15.95■□□□□ 0.14
USP39-218ENST00000493829 ENSAO43768 121 aaKnown RBP15.95■□□□□ 0.14
USP39-218ENST00000493829 DLX1P56177 255 aa15.95■□□□□ 0.14
USP39-218ENST00000493829 TAS2R19P59542 299 aa15.95■□□□□ 0.14
USP39-218ENST00000493829 KLF9Q13886 244 aaPredicted RBP15.95■□□□□ 0.14
USP39-218ENST00000493829 HERPUD1Q15011 391 aa15.95■□□□□ 0.14
USP39-218ENST00000493829 STEAP3Q658P3 488 aa15.95■□□□□ 0.14
USP39-218ENST00000493829 TRAT1Q6PIZ9 186 aa15.95■□□□□ 0.14
USP39-218ENST00000493829 OR5H2Q8NGV7 314 aa15.95■□□□□ 0.14
USP39-218ENST00000493829 C8orf46Q8TAG6 207 aa15.95■□□□□ 0.14
USP39-218ENST00000493829 TINAGL1Q9GZM7 467 aaPredicted RBP15.95■□□□□ 0.14
USP39-218ENST00000493829 NCOR1P1Q9H4R4 102 aa15.95■□□□□ 0.14
USP39-218ENST00000493829 ITPR3Q14573 2671 aa15.94■□□□□ 0.14
USP39-218ENST00000493829 IGHV2-70DA0A0C4DH43 119 aa15.94■□□□□ 0.14
USP39-218ENST00000493829 IGKV1-6A0A0C4DH72 117 aa15.94■□□□□ 0.14
USP39-218ENST00000493829 KBTBD11-OT1A0A1B0GTJ5 212 aa15.94■□□□□ 0.14
USP39-218ENST00000493829 ZNF729A6NN14 1252 aaPredicted RBP15.94■□□□□ 0.14
USP39-218ENST00000493829 SPINT2O43291 252 aa15.94■□□□□ 0.14
USP39-218ENST00000493829 MMP23AO75900 390 aa15.94■□□□□ 0.14
USP39-218ENST00000493829 LIPFP07098 398 aa15.94■□□□□ 0.14
USP39-218ENST00000493829 ZNF728P0DKX0 622 aa15.94■□□□□ 0.14
USP39-218ENST00000493829 NAT1P18440 290 aa15.94■□□□□ 0.14
USP39-218ENST00000493829 RFX2P48378 723 aa15.94■□□□□ 0.14
USP39-218ENST00000493829 SSBP1Q04837 148 aaKnown RBP15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms