RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 SLC25A10Q9UBX3 287 aaPredicted RBP4.91□□□□□ -1.62
USP39-213ENST00000467885 ZNF107Q9UII5 783 aaPredicted RBP4.91□□□□□ -1.62
USP39-213ENST00000467885 POLR3KQ9Y2Y1 108 aaPredicted RBP4.91□□□□□ -1.62
USP39-213ENST00000467885 PTPN13Q12923 2485 aa4.91□□□□□ -1.62
USP39-213ENST00000467885 CACNA1DQ01668 2161 aa4.91□□□□□ -1.62
USP39-213ENST00000467885 LOC105371242A0A075B767 164 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 MEIKINA0A087WXM9 373 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 KRTAP4-8A0A0G2JLE6 195 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 KBTBD11-OT1A0A1B0GTJ5 212 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 TMEM30CPA0ZSE6 113 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 ODAMA1E959 279 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 MEX3AA1L020 520 aaKnown RBP4.9□□□□□ -1.63
USP39-213ENST00000467885 ISPDA4D126 451 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 A6NJY4 79 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 C17orf98A8MV24 154 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 TRDCB7Z8K6 153 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 FAM157AC9JC47 383 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 H7C1Q1 480 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 PHF1O43189 567 aaPredicted RBP4.9□□□□□ -1.63
USP39-213ENST00000467885 UPK1BO75841 260 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 MMP23AO75900 390 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 ECDO95905 644 aaPredicted RBP4.9□□□□□ -1.63
USP39-213ENST00000467885 CD74P04233 296 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 CD3DP04234 171 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 NDUFB7P17568 137 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 USF1P22415 310 aaPredicted RBP4.9□□□□□ -1.63
USP39-213ENST00000467885 GDNFP39905 211 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 CBX5P45973 191 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 RFX2P48378 723 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 NPY4RP50391 375 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 GNG2P59768 71 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 SSBP1Q04837 148 aaKnown RBP4.9□□□□□ -1.63
USP39-213ENST00000467885 LOXL1Q08397 574 aaPredicted RBP4.9□□□□□ -1.63
USP39-213ENST00000467885 KLF9Q13886 244 aaPredicted RBP4.9□□□□□ -1.63
USP39-213ENST00000467885 ATXN7L3Q14CW9 347 aaPredicted RBP4.9□□□□□ -1.63
USP39-213ENST00000467885 LRRC10Q5BKY1 277 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 IGSF11Q5DX21 431 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 RNASE12Q5GAN4 147 aaKnown RBP4.9□□□□□ -1.63
USP39-213ENST00000467885 UTF1Q5T230 341 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 STEAP3Q658P3 488 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 ZNF660Q6AZW8 331 aaPredicted RBP4.9□□□□□ -1.63
USP39-213ENST00000467885 CLEC2AQ6UVW9 174 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 C1orf122Q6ZSJ8 110 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 OVCH2Q7RTZ1 564 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 TRAPPC6BQ86SZ2 158 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 SPICQ8N5J4 248 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 ASCC1Q8N9N2 400 aaKnown RBP4.9□□□□□ -1.63
USP39-213ENST00000467885 TMEM185AQ8NFB2 350 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 BEST4Q8NFU0 473 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 OR5AP2Q8NGF4 316 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 OR4D10Q8NGI6 311 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 RFESDQ8TAC1 157 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 NEK7Q8TDX7 302 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 MAFIPQ8WZ33 124 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 CCDC32Q9BV29 185 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 REG4Q9BYZ8 158 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 WDR12Q9GZL7 423 aaKnown RBP4.9□□□□□ -1.63
USP39-213ENST00000467885 NARFLQ9H6Q4 476 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 TAF9BQ9HBM6 251 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 MMP26Q9NRE1 261 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 C19orf12Q9NSK7 152 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 TAS2R3Q9NYW6 316 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 CLN8Q9UBY8 286 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 ANXA10Q9UJ72 324 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 RPUSD1Q9UJJ7 312 aaKnown RBP4.9□□□□□ -1.63
USP39-213ENST00000467885 TRAPPC2LQ9UL33 140 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 PCDHB10Q9UN67 800 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 ITPR2Q14571 2701 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 CHD3Q12873 2000 aaKnown RBP4.9□□□□□ -1.63
USP39-213ENST00000467885 AKAP6Q13023 2319 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 UNC79Q9P2D8 2635 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 HECTD1Q9ULT8 2610 aa4.9□□□□□ -1.63
USP39-213ENST00000467885 MAP1AP78559 2803 aaPredicted RBP4.89□□□□□ -1.63
USP39-213ENST00000467885 POLQO75417 2590 aa4.89□□□□□ -1.63
USP39-213ENST00000467885 TRBV6-7A0A0A0MS04 114 aa4.89□□□□□ -1.63
USP39-213ENST00000467885 PPIAL4CA0A0B4J2A2 164 aa4.89□□□□□ -1.63
USP39-213ENST00000467885 hADV38S2A0JD32 116 aa4.89□□□□□ -1.63
USP39-213ENST00000467885 FUOMA2VDF0 154 aa4.89□□□□□ -1.63
USP39-213ENST00000467885 CYSRT1A8MQ03 144 aa4.89□□□□□ -1.63
USP39-213ENST00000467885 C22orf46C9J442 243 aa4.89□□□□□ -1.63
USP39-213ENST00000467885 C12orf77C9JDV5 145 aa4.89□□□□□ -1.63
USP39-213ENST00000467885 F2RL2O00254 374 aa4.89□□□□□ -1.63
USP39-213ENST00000467885 HBZP02008 142 aa4.89□□□□□ -1.63
USP39-213ENST00000467885 PMP2P02689 132 aa4.89□□□□□ -1.63
USP39-213ENST00000467885 ZNF728P0DKX0 622 aa4.89□□□□□ -1.63
USP39-213ENST00000467885 PPIAL4GP0DN37 164 aa4.89□□□□□ -1.63
USP39-213ENST00000467885 RPS2P15880 293 aaKnown RBP4.89□□□□□ -1.63
USP39-213ENST00000467885 SLC25A16P16260 332 aa4.89□□□□□ -1.63
USP39-213ENST00000467885 HLA-DMAP28067 261 aa4.89□□□□□ -1.63
USP39-213ENST00000467885 ZNF134P52741 427 aa4.89□□□□□ -1.63
USP39-213ENST00000467885 EDDM3BP56851 147 aa4.89□□□□□ -1.63
USP39-213ENST00000467885 LOXL3P58215 753 aa4.89□□□□□ -1.63
USP39-213ENST00000467885 RPL31P62899 125 aaKnown RBP4.89□□□□□ -1.63
USP39-213ENST00000467885 PAX8Q06710 450 aa4.89□□□□□ -1.63
USP39-213ENST00000467885 DYRK1AQ13627 763 aa4.89□□□□□ -1.63
USP39-213ENST00000467885 EDDM3AQ14507 147 aa4.89□□□□□ -1.63
USP39-213ENST00000467885 HERPUD1Q15011 391 aa4.89□□□□□ -1.63
USP39-213ENST00000467885 HMGN3Q15651 99 aa4.89□□□□□ -1.63
USP39-213ENST00000467885 CD276Q5ZPR3 534 aa4.89□□□□□ -1.63
USP39-213ENST00000467885 STEAP1BQ6NZ63 245 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms