RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 DMBX1Q8NFW5 382 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 EDARADDQ8WWZ3 215 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 PTX4Q96A99 478 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 ZNF552Q9H707 407 aaPredicted RBP7.44□□□□□ -1.22
USP40-203ENST00000427112 PISDQ9UG56 409 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 GAB2Q9UQC2 676 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 GOLT1BQ9Y3E0 138 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 KPTNQ9Y664 436 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 SVEP1Q4LDE5 3571 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 ZNF503-AS2A6NEH8 195 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 P04436 131 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 CTSDP07339 412 aaPredicted RBP7.44□□□□□ -1.22
USP40-203ENST00000427112 GRPP07492 148 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 CD33P20138 364 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 CA6P23280 308 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 THBS4P35443 961 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 ERVS71-1P61550 626 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 OR5I1Q13606 314 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 ADIRFQ15847 76 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 PRSS8Q16651 343 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 ATP1A1-AS1Q5TC04 95 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 TUSC5Q8IXB3 177 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 Q8WTZ3 238 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 OR51M1Q9H341 326 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 MYOZ1Q9NP98 299 aaPredicted RBP7.44□□□□□ -1.22
USP40-203ENST00000427112 LRFN1Q9P244 771 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 MPPED1O15442 326 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 UBE2G2P60604 165 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 ZNF816Q0VGE8 651 aaPredicted RBP7.44□□□□□ -1.22
USP40-203ENST00000427112 SURF2Q15527 256 aaPredicted RBP7.44□□□□□ -1.22
USP40-203ENST00000427112 PNLIPRP3Q17RR3 467 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 HIKESHIQ53FT3 197 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 ASPHD1Q5U4P2 390 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 SSX7Q7RTT5 188 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 CCDC54Q8NEL0 328 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 SLC35B3Q9H1N7 401 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 DEPPQ9NTK1 212 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 DOK5Q9P104 306 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 TRBV6-7A0A0A0MS04 114 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 RBFOX3A6NFN3 312 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 KRASP01116 189 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 UMODP07911 640 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 RTL6Q6ICC9 239 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 MRPL21Q7Z2W9 205 aaKnown RBP7.43□□□□□ -1.22
USP40-203ENST00000427112 FAM185AQ8N0U4 392 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 TMEM252Q8N6L7 170 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 TWSG1Q9GZX9 223 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 OPN3Q9H1Y3 402 aaPredicted RBP7.43□□□□□ -1.22
USP40-203ENST00000427112 OPA3Q9H6K4 179 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 BCO1Q9HAY6 547 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 PATZ1Q9HBE1 687 aaKnown RBP7.43□□□□□ -1.22
USP40-203ENST00000427112 SIRT7Q9NRC8 400 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 STARD10Q9Y365 291 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 SERPINE2P07093 398 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 DANCRP0C864 163 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 PGA5P0DJD9 388 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 TBPP20226 339 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 PTTG1IPP53801 180 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 FAM3AP98173 230 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 NAAAQ02083 359 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 PCOLCEQ15113 449 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 DEFB127Q9H1M4 99 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 SLC25A22Q9H936 323 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 PARP11Q9NR21 331 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 CEP295Q9C0D2 2601 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 A0A1B0GUS0 222 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 C9J4A7 227 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 GPR137BO60478 399 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 PTBP3O95758 552 aaKnown RBP7.43□□□□□ -1.22
USP40-203ENST00000427112 MT-ND4LP03901 98 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 TK1P04183 234 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 PRF1P14222 555 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 LIFP15018 202 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 RAB4AP20338 218 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 MSX1P28360 303 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 VAMP3Q15836 100 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 ZNF239Q16600 458 aaKnown RBP7.43□□□□□ -1.22
USP40-203ENST00000427112 LYSMD4Q5XG99 296 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 MSI2Q96DH6 328 aaKnown RBP7.43□□□□□ -1.22
USP40-203ENST00000427112 WNT5BQ9H1J7 359 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 GPR27Q9NS67 375 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 CACNG5Q9UF02 275 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 RPH3ALQ9UNE2 315 aa7.43□□□□□ -1.22
USP40-203ENST00000427112 NOSIPQ9Y314 301 aaKnown RBP7.43□□□□□ -1.22
USP40-203ENST00000427112 UBE2L5PA0A1B0GUS4 154 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 C5orf52A6NGY3 159 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 EIF1BO60739 113 aaKnown RBP7.42□□□□□ -1.22
USP40-203ENST00000427112 MRPL33O75394 65 aaKnown RBP7.42□□□□□ -1.22
USP40-203ENST00000427112 EIF1P41567 113 aaKnown RBP7.42□□□□□ -1.22
USP40-203ENST00000427112 SRSF4Q08170 494 aaKnown RBP7.42□□□□□ -1.22
USP40-203ENST00000427112 PRDX4Q13162 271 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 PYY3Q5JQD4 70 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 Q6ZRM9 215 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 MCEMP1Q8IX19 187 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 FAM89BQ8N5H3 189 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 SAT2Q96F10 170 aaPredicted RBP7.42□□□□□ -1.22
USP40-203ENST00000427112 GGACTQ9BVM4 153 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 TUBA4BQ9H853 241 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 C19orf25Q9UFG5 118 aaPredicted RBP7.42□□□□□ -1.22
USP40-203ENST00000427112 TANC2Q9HCD6 1990 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms