RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 KIR2DS1A0A191URI9 304 aa15.36■□□□□ 0.05
CCDC88C-203ENST00000389856 C13orf42A0A1B0GVH6 325 aa15.36■□□□□ 0.05
CCDC88C-203ENST00000389856 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP15.36■□□□□ 0.05
CCDC88C-203ENST00000389856 SDCBPO00560 298 aaPredicted RBP15.36■□□□□ 0.05
CCDC88C-203ENST00000389856 SPDEFO95238 335 aa15.36■□□□□ 0.05
CCDC88C-203ENST00000389856 IFNA2P01563 188 aa15.36■□□□□ 0.05
CCDC88C-203ENST00000389856 GNLYP22749 145 aa15.36■□□□□ 0.05
CCDC88C-203ENST00000389856 KIR2DS4P43632 304 aa15.36■□□□□ 0.05
CCDC88C-203ENST00000389856 TLE1Q04724 770 aa15.36■□□□□ 0.05
CCDC88C-203ENST00000389856 KIR2DS1Q14954 304 aa15.36■□□□□ 0.05
CCDC88C-203ENST00000389856 PAN3Q58A45 887 aaKnown RBP15.36■□□□□ 0.05
CCDC88C-203ENST00000389856 PRSS54Q6PEW0 395 aa15.36■□□□□ 0.05
CCDC88C-203ENST00000389856 SGPP2Q8IWX5 399 aa15.36■□□□□ 0.05
CCDC88C-203ENST00000389856 LRRC29Q8WV35 223 aa15.36■□□□□ 0.05
CCDC88C-203ENST00000389856 PIK3IP1Q96FE7 263 aa15.36■□□□□ 0.05
CCDC88C-203ENST00000389856 EGLN1Q9GZT9 426 aa15.36■□□□□ 0.05
CCDC88C-203ENST00000389856 ZZEF1O43149 2961 aa15.36■□□□□ 0.05
CCDC88C-203ENST00000389856 IFNL4K9M1U5 179 aa15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 OR5H8P0DN80 308 aa15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 RBMXP38159 391 aaKnown RBP15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 KCNJ3P48549 501 aa15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 PDCD1Q15116 288 aa15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 TESK1Q15569 626 aa15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 LRRC37A5PQ49AS3 106 aa15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 ACP7Q6ZNF0 438 aa15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 MOB1BQ7L9L4 216 aa15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 LINC01560Q8TB33 94 aa15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 ZNF2Q9BSG1 426 aaPredicted RBP15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 SEBOXQ9HB31 216 aaPredicted RBP15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 FBXO9Q9UK97 447 aaPredicted RBP15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 ITPR1Q14643 2758 aa15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 TRBV6-6A0A0A6YYG2 114 aa15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 A8MXK9 166 aa15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 SHISA9B4DS77 424 aa15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 HAND1O96004 215 aa15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 IGHV1-46P01743 117 aa15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 CD55P08174 381 aa15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 IRF2P14316 349 aa15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 DUSP1P28562 367 aa15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 APOBEC3AP31941 199 aaPredicted RBP15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 UCP3P55916 312 aa15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 SLC9A3R2Q15599 337 aa15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 FAM209AQ5JX71 171 aa15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 Q6P435 159 aa15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 HDHD3Q9BSH5 251 aaPredicted RBP15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 ZNF471Q9BX82 626 aaPredicted RBP15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 METTL8Q9H825 291 aaKnown RBP15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 IL36RNQ9UBH0 155 aa15.35■□□□□ 0.05
CCDC88C-203ENST00000389856 TRAV24A0A0B4J272 114 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 IGHV3-64DA0A0J9YX35 117 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 CRYM-AS1A6NIL9 109 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 LRRC30A6NM36 301 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 C17orf100A8MU93 164 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 SRRM5B3KS81 715 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 B9A039 149 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 HS3ST1O14792 307 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 OR2H2O95918 312 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 NAPSAO96009 420 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 RLN2P04090 185 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 FGF2P09038 288 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 CTXN2P0C2S0 81 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 GLP1RP43220 463 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 EIF5AP63241 154 aaKnown RBP15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 EFNB3Q15768 340 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 ANKRD55Q3KP44 614 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 BRICD5Q6PL45 260 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 ZNF826PQ6ZT77 177 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 OR1S1Q8NH92 325 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 PCNPQ8WW12 178 aaKnown RBP15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 ITLN1Q8WWA0 313 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 DCUN1D4Q92564 292 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 HS3ST6Q96QI5 342 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 MS4A5Q9H3V2 200 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 DYNLRB1Q9NP97 96 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 ZNF581Q9P0T4 197 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 KCNIP3Q9Y2W7 256 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 CADP27708 2225 aa15.34■□□□□ 0.05
CCDC88C-203ENST00000389856 COL6A6A6NMZ7 2263 aa15.33■□□□□ 0.05
CCDC88C-203ENST00000389856 F5H0A9 414 aaPredicted RBP15.33■□□□□ 0.04
CCDC88C-203ENST00000389856 IL15RAQ13261 267 aa15.33■□□□□ 0.04
CCDC88C-203ENST00000389856 DAZAP2Q15038 168 aaPredicted RBP15.33■□□□□ 0.04
CCDC88C-203ENST00000389856 IGFBP7Q16270 282 aa15.33■□□□□ 0.04
CCDC88C-203ENST00000389856 MOGAT3Q86VF5 341 aa15.33■□□□□ 0.04
CCDC88C-203ENST00000389856 PPP1R35Q8TAP8 253 aa15.33■□□□□ 0.04
CCDC88C-203ENST00000389856 RDH5Q92781 318 aa15.33■□□□□ 0.04
CCDC88C-203ENST00000389856 RNF7Q9UBF6 113 aa15.33■□□□□ 0.04
CCDC88C-203ENST00000389856 OR14J1Q9UGF5 321 aa15.33■□□□□ 0.04
CCDC88C-203ENST00000389856 KMT2BQ9UMN6 2715 aaPredicted RBP15.33■□□□□ 0.04
CCDC88C-203ENST00000389856 CACNA1BQ00975 2339 aa15.33■□□□□ 0.04
CCDC88C-203ENST00000389856 SIRPB1O00241 398 aa15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 SLC33A1O00400 549 aaPredicted RBP15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 IFNA21P01568 189 aa15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 TPT1P13693 172 aaKnown RBP15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 LMO1P25800 156 aa15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 LUMP51884 338 aaPredicted RBP15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 TFF3Q07654 80 aa15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 SUN5Q8TC36 379 aa15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 Q8TCH9 128 aa15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 MAFIPQ8WZ33 124 aa15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 GALNT14Q96FL9 552 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms