RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 SCMH1Q96GD3 660 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 CNOT2Q9NZN8 540 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 AREGP15514 252 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 MAGEB1P43366 347 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 MFAP4P55083 255 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 WDR61Q9GZS3 305 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 ZNF331Q9NQX6 463 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 FAM212BQ9NTI7 297 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 TXNL4BQ9NX01 149 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 ATAD5Q96QE3 1844 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 CGB1A6NKQ9 187 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 H0Y980 276 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 SYNGR1O43759 233 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 RAMP1O60894 148 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 PJVKQ0ZLH3 352 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 MRPL14Q6P1L8 145 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 TMEM52Q8NDY8 209 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 PHYHIPQ92561 330 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 OR8B4Q96RC9 309 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 SPRR3Q9UBC9 169 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 ZNF705GA8MUZ8 300 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 AP4M1O00189 453 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 RPL35AP18077 110 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 FGF7P21781 194 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 IGHV1-2P23083 117 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 DHRS2Q13268 280 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 BCDIN3DQ7Z5W3 292 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 MMD2Q8IY49 270 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 Q8NFD4 153 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 OR4A4PQ8NGN8 299 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 SLC35B4Q969S0 331 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 MOGAT1Q96PD6 335 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 GABARAPL1Q9H0R8 117 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 PGPA6NDG6 321 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 FCER1GP30273 86 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 DUX3Q96PT4 197 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 PRDM13Q9H4Q3 707 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 PLXNA1Q9UIW2 1896 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 PDCD6O75340 191 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 HIST1H1BP16401 226 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 SUCLG1P53597 346 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 BAGE3Q86Y29 109 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 BAGE2Q86Y30 109 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 TDRD6O60522 2096 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 ACACAQ13085 2346 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 ASCC3Q8N3C0 2202 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 H3BUX3 64 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 RAG2P55895 527 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 GBGT1Q8N5D6 347 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 ZBTB34Q8NCN2 500 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 TSTD3H0UI37 97 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 TO15178 435 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 S1PR2O95136 353 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 SHC1P29353 583 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 ZNF843Q8N446 348 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 GPX8Q8TED1 209 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 CXorf58Q96LI9 332 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 ZNF488Q96MN9 340 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 SLC29A1Q99808 456 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 RTN4RQ9BZR6 473 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 DTX4Q9Y2E6 619 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 SNRPGP15A8MWD9 76 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 SAMD13Q5VXD3 122 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 COMMD7Q86VX2 200 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 WDR34Q96EX3 536 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 ARHGDIGQ99819 225 aa7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 ZNF275Q9NSD4 429 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-202ENST00000381753 SBF2Q86WG5 1849 aa7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 MAGEB4O15481 346 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 TMEM78Q5T7P6 136 aa7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 LURAP1LQ8IV03 231 aa7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 OR4P4Q8NGL7 312 aa7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 OR10S1Q8NGN2 331 aa7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 SCARB1Q8WTV0 552 aa7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 CABLES2Q9BTV7 478 aa7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 RNF122Q9H9V4 155 aa7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 EMCNQ9ULC0 261 aa7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 TSPAN2O60636 221 aa7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 RAB5AP20339 215 aa7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 WNT5AP41221 380 aa7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 MLLT11Q13015 90 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 APOOLQ6UXV4 268 aa7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 OR10R2Q8NGX6 335 aa7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 FAM213BQ8TBF2 198 aa7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 GTF3AQ92664 365 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 FAAP24Q9BTP7 215 aa7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 SRRQ9GZT4 340 aa7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 UGT2A1Q9Y4X1 527 aa7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 SCGB1D1O95968 90 aa7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 TRAPPC2P0DI81 140 aa7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 TRAPPC2BP0DI82 140 aa7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 RPS27AP62979 156 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 UBA52P62987 128 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 RPUSD3Q6P087 351 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 CCBE1Q6UXH8 406 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 ATG4DQ86TL0 474 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 LRRC28Q86X40 367 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 ZCCHC24Q8N2G6 241 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-202ENST00000381753 IL17DQ8TAD2 202 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms