RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 LMO1P25800 156 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 IFITM2Q01629 132 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 CDSNQ15517 529 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 ABCA11PQ4W5N1 156 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 NCMAPQ5T1S8 102 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 LPCAT3Q6P1A2 487 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 MOB1BQ7L9L4 216 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 GCSAMQ8N6F7 178 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 LILRB4Q8NHJ6 448 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 LINC01560Q8TB33 94 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 CA5BP1Q8WTZ4 195 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 PLPPR2Q96GM1 343 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 PDCD10Q9BUL8 212 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 RASL12Q9NYN1 266 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 DNAJB11Q9UBS4 358 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 IL19Q9UHD0 177 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 ZDHHC8Q9ULC8 765 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 COL6A6A6NMZ7 2263 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 TEX13DA0A0J9YY54 714 aaPredicted RBP11.26□□□□□ -0.61
HMGB1-202ENST00000339872 FAM25EA8MYX2 175 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.26□□□□□ -0.61
HMGB1-202ENST00000339872 DIRAS3O95661 229 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 CTXN2P0C2S0 81 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 TNFSF4P23510 183 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 PIGPP57054 158 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 COL10A1Q03692 680 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 SGPP2Q8IWX5 399 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 OR4A4PQ8NGN8 299 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 PRR7Q8TB68 274 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 NDRG3Q9UGV2 375 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 METRNQ9UJH8 293 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 ICE1Q9Y2F5 2266 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 NBEAQ8NFP9 2946 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 CFHR2P36980 270 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 ANKRD55Q3KP44 614 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 PHLDA2Q53GA4 152 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 SLC38A6Q8IZM9 456 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 GAPTQ8N292 157 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 PRR18Q8N4B5 295 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 ASCC1Q8N9N2 400 aaKnown RBP11.25□□□□□ -0.61
HMGB1-202ENST00000339872 COQ8AQ8NI60 647 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 IL1F10Q8WWZ1 152 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 ASB13Q8WXK3 278 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 KIRREL1Q96J84 757 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 WIPI2Q9Y4P8 454 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 ADGRG4Q8IZF6 3080 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 IGHV3OR15-7A0A075B7D8 119 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 TMEM30CPA0ZSE6 113 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 CRYM-AS1A6NIL9 109 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 DBX1A6NMT0 343 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 SHISA9B4DS77 424 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 IFNL4K9M1U5 179 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 IFNA2P01563 188 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 GATA4P43694 442 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 UCP3P55916 312 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 DMRTC2Q8IXT2 367 aaPredicted RBP11.25□□□□□ -0.61
HMGB1-202ENST00000339872 CD177Q8N6Q3 437 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 LRRC46Q96FV0 321 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 GCM1Q9NP62 436 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 SLC2A9Q9NRM0 540 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 CACNA1DQ01668 2161 aa11.25□□□□□ -0.61
HMGB1-202ENST00000339872 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.24□□□□□ -0.61
HMGB1-202ENST00000339872 POM121CA8CG34 1229 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 RGS11O94810 467 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 PSG2P11465 335 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 HLA-GP17693 338 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 OR3A1P47881 315 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 AESQ08117 197 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 OR10J5Q8NHC4 309 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 UBALD1Q8TB05 177 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 SECTM1Q8WVN6 248 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 NEUROG1Q92886 237 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 SEC22AQ96IW7 307 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 CABLES2Q9BTV7 478 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 ERRFI1Q9UJM3 462 aaPredicted RBP11.24□□□□□ -0.61
HMGB1-202ENST00000339872 PAIP2BQ9ULR5 123 aaKnown RBP11.24□□□□□ -0.61
HMGB1-202ENST00000339872 PCDHB10Q9UN67 800 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 IGKV1D-17A0A075B6S4 117 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 A0A0B4J2A0 478 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 C5orf51A6NDU8 294 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 VSTM5A8MXK1 200 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 CD3EP07766 207 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 PRDX2P32119 198 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 GABRA2P47869 451 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 SORDQ00796 357 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 FAM90A1Q86YD7 464 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 OR11L1Q8NGX0 322 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 RTN4IP1Q8WWV3 396 aaPredicted RBP11.24□□□□□ -0.61
HMGB1-202ENST00000339872 PIK3IP1Q96FE7 263 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 RSRP1Q9BUV0 290 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 KCNJ16Q9NPI9 418 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 MBNL3Q9NUK0 354 aaKnown RBP11.24□□□□□ -0.61
HMGB1-202ENST00000339872 SHPKQ9UHJ6 478 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 KIF25Q9UIL4 384 aa11.24□□□□□ -0.61
HMGB1-202ENST00000339872 RELNP78509 3460 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 PKD1L2Q7Z442 2459 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 TRBV6-7A0A0A0MS04 114 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 C13orf42A0A1B0GVH6 325 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 C17orf100A8MU93 164 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 M0R233 179 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms