RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 NPEPL1Q8NDH3 523 aa9.07□□□□□ -0.96
LIMCH1-203ENST00000396595 FBXO17Q96EF6 278 aa9.07□□□□□ -0.96
LIMCH1-203ENST00000396595 PSG11Q9UQ72 335 aa9.07□□□□□ -0.96
LIMCH1-203ENST00000396595 HPXP02790 462 aa9.07□□□□□ -0.96
LIMCH1-203ENST00000396595 POLR2GP62487 172 aaKnown RBP eCLIP9.07□□□□□ -0.96
LIMCH1-203ENST00000396595 LGALSLQ3ZCW2 172 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-203ENST00000396595 ANKRD37Q7Z713 158 aa9.07□□□□□ -0.96
LIMCH1-203ENST00000396595 MS4A3Q96HJ5 214 aa9.07□□□□□ -0.96
LIMCH1-203ENST00000396595 GNRHR2Q96P88 292 aa9.07□□□□□ -0.96
LIMCH1-203ENST00000396595 P4HTMQ9NXG6 502 aa9.07□□□□□ -0.96
LIMCH1-203ENST00000396595 IGHV5-51A0A0C4DH38 117 aa9.07□□□□□ -0.96
LIMCH1-203ENST00000396595 C7orf77A4D0Y5 90 aa9.07□□□□□ -0.96
LIMCH1-203ENST00000396595 SLC25A5P05141 298 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-203ENST00000396595 DLX1P56177 255 aa9.07□□□□□ -0.96
LIMCH1-203ENST00000396595 IL11RAQ14626 422 aa9.07□□□□□ -0.96
LIMCH1-203ENST00000396595 MICBQ29980 383 aa9.07□□□□□ -0.96
LIMCH1-203ENST00000396595 OR4F17Q8NGA8 305 aa9.07□□□□□ -0.96
LIMCH1-203ENST00000396595 OR4D9Q8NGE8 314 aa9.07□□□□□ -0.96
LIMCH1-203ENST00000396595 OR8B12Q8NGG6 310 aa9.07□□□□□ -0.96
LIMCH1-203ENST00000396595 C10orf35Q96D05 121 aa9.07□□□□□ -0.96
LIMCH1-203ENST00000396595 C11orf68Q9H3H3 251 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-203ENST00000396595 FRRS1LQ9P0K9 344 aa9.07□□□□□ -0.96
LIMCH1-203ENST00000396595 ICAM5Q9UMF0 924 aa9.07□□□□□ -0.96
LIMCH1-203ENST00000396595 CORTO00230 105 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 COX6CP09669 75 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 CA6P23280 308 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 FZD5Q13467 585 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 OR1C1Q15619 314 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 ZNF79Q15937 498 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 CADM4Q8NFZ8 388 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 OR4D11Q8NGI4 311 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 HYAL3O43820 417 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 BCL3P20749 454 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 SKP2Q13309 424 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 MOB3BQ86TA1 216 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 ATG4DQ86TL0 474 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 OR2Z1Q8NG97 314 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 ASB10Q8WXI3 467 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 LRRC3BQ96PB8 259 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 WDR13Q9H1Z4 485 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 MRPS18AQ9NVS2 196 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 MPC1Q9Y5U8 109 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 A0A1W2PQD3 144 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 EIF3GO75821 320 aaKnown RBP eCLIP9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 HIST1H1EP10412 219 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 VDAC1P21796 283 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 GAB4Q2WGN9 574 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 MESTQ5EB52 335 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 TMEM136Q6ZRR5 245 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 UBALD2Q8IYN6 164 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 LYG1Q8N1E2 194 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 ZNF430Q9H8G1 570 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 FLRT3Q9NZU0 649 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 C7orf66A4D0T2 115 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 SPRY3O43610 288 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 SYNGR2O43760 224 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 MPZL1O95297 269 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 SRD5A2P31213 254 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 OPRK1P41145 380 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 LSM6P62312 80 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 ACSM6Q6P461 480 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 ALKBH7Q9BT30 221 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 SH2D2AQ9NP31 389 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 ZFP64Q9NPA5 681 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 SLC52A3Q9NQ40 469 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 CBLN4Q9NTU7 201 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 STARD10Q9Y365 291 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 KIAA1551Q9HCM1 1747 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 IGHV1OR21-1A0A087WYE8 117 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 M0QZ24 198 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 HOXB3P14651 431 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 DYNLT3P51808 116 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 DNLZQ5SXM8 178 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 RHBDD2Q6NTF9 364 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 OR1L4Q8NGR5 311 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 RNF2Q99496 336 aa9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 PSMG3Q9BT73 122 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 MYOZ1Q9NP98 299 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-203ENST00000396595 MED19A0JLT2 244 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 ZNF785A8K8V0 405 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 MKRN2OSH3BPM6 223 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 GNB2P62879 340 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 RFESDQ8TAC1 157 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 SFRP2Q96HF1 295 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 SARGQ9BW04 601 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 TMEM167BQ9NRX6 74 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 TRAV17A0A0B4J275 112 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 CD160O95971 181 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 NMUP48645 174 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 KHDC1LQ5JSQ8 128 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 ADTRPQ96IZ2 230 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 GPR27Q9NS67 375 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 OR2T8A6NH00 312 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 RBM11P57052 281 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 AMMECR1LQ6DCA0 310 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 NUBPLQ8TB37 319 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 PLPPR2Q96GM1 343 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 VSTM2LQ96N03 204 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 DERL1Q9BUN8 251 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms