RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 MMP14P50281 582 aa13.9□□□□□ -0.18
LINC00538-201ENST00000626109 AXDND1Q5T1B0 1012 aaPredicted RBP13.9□□□□□ -0.18
LINC00538-201ENST00000626109 L1TD1Q5T7N2 865 aaKnown RBP13.9□□□□□ -0.18
LINC00538-201ENST00000626109 JARID2Q92833 1246 aaPredicted RBP13.9□□□□□ -0.18
LINC00538-201ENST00000626109 G3BP2Q9UN86 482 aaKnown RBP13.9□□□□□ -0.18
LINC00538-201ENST00000626109 CDHR2Q9BYE9 1310 aa13.9□□□□□ -0.18
LINC00538-201ENST00000626109 STK10O94804 968 aaKnown RBP13.9□□□□□ -0.18
LINC00538-201ENST00000626109 ST5P78524 1137 aa13.9□□□□□ -0.18
LINC00538-201ENST00000626109 NUTM1Q86Y26 1132 aa13.9□□□□□ -0.18
LINC00538-201ENST00000626109 AMOTL1Q8IY63 956 aa13.9□□□□□ -0.18
LINC00538-201ENST00000626109 ARHGEF10LQ9HCE6 1279 aa13.9□□□□□ -0.18
LINC00538-201ENST00000626109 IRS4O14654 1257 aaPredicted RBP13.89□□□□□ -0.19
LINC00538-201ENST00000626109 GNAI2P04899 355 aa13.89□□□□□ -0.19
LINC00538-201ENST00000626109 CASP7P55210 303 aa13.89□□□□□ -0.19
LINC00538-201ENST00000626109 ERFEQ4G0M1 354 aa13.89□□□□□ -0.19
LINC00538-201ENST00000626109 ANKRD45Q5TZF3 282 aa13.89□□□□□ -0.19
LINC00538-201ENST00000626109 PRR5LQ6MZQ0 368 aa13.89□□□□□ -0.19
LINC00538-201ENST00000626109 SDE2Q6IQ49 451 aa13.88□□□□□ -0.19
LINC00538-201ENST00000626109 SNX21Q969T3 373 aa13.88□□□□□ -0.19
LINC00538-201ENST00000626109 SUCLG2Q96I99 432 aa13.88□□□□□ -0.19
LINC00538-201ENST00000626109 TSPAN18Q96SJ8 248 aa13.88□□□□□ -0.19
LINC00538-201ENST00000626109 FBXO9Q9UK97 447 aaPredicted RBP13.88□□□□□ -0.19
LINC00538-201ENST00000626109 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.88□□□□□ -0.19
LINC00538-201ENST00000626109 SYNE4Q8N205 404 aa13.88□□□□□ -0.19
LINC00538-201ENST00000626109 LRRFIP2Q9Y608 721 aaKnown RBP13.88□□□□□ -0.19
LINC00538-201ENST00000626109 ABCC12Q96J65 1359 aa13.87□□□□□ -0.19
LINC00538-201ENST00000626109 GOLGA6CA6NDK9 693 aa13.87□□□□□ -0.19
LINC00538-201ENST00000626109 GOLGA6BA6NDN3 693 aa13.87□□□□□ -0.19
LINC00538-201ENST00000626109 GOLGA6DP0CG33 693 aa13.87□□□□□ -0.19
LINC00538-201ENST00000626109 HOXD11P31277 338 aaPredicted RBP13.87□□□□□ -0.19
LINC00538-201ENST00000626109 GOLGA6AQ9NYA3 693 aa13.87□□□□□ -0.19
LINC00538-201ENST00000626109 PRR12Q9ULL5 1215 aa13.87□□□□□ -0.19
LINC00538-201ENST00000626109 NRXN2Q9P2S2 1712 aa13.87□□□□□ -0.19
LINC00538-201ENST00000626109 PDE8AO60658 829 aa13.86□□□□□ -0.19
LINC00538-201ENST00000626109 RECKO95980 971 aa13.86□□□□□ -0.19
LINC00538-201ENST00000626109 HCLS1P14317 486 aaPredicted RBP13.86□□□□□ -0.19
LINC00538-201ENST00000626109 PPP4CP60510 307 aa13.86□□□□□ -0.19
LINC00538-201ENST00000626109 SLC10A5Q5PT55 438 aa13.86□□□□□ -0.19
LINC00538-201ENST00000626109 CCDC24Q8N4L8 307 aa13.86□□□□□ -0.19
LINC00538-201ENST00000626109 PLA2G12BQ9BX93 195 aa13.86□□□□□ -0.19
LINC00538-201ENST00000626109 SPON1Q9HCB6 807 aa13.86□□□□□ -0.19
LINC00538-201ENST00000626109 RIC1Q4ADV7 1423 aa13.86□□□□□ -0.19
LINC00538-201ENST00000626109 LAMB2P55268 1798 aa13.86□□□□□ -0.19
LINC00538-201ENST00000626109 HOXA2O43364 376 aa13.86□□□□□ -0.19
LINC00538-201ENST00000626109 BICC1Q9H694 974 aaKnown RBP13.86□□□□□ -0.19
LINC00538-201ENST00000626109 FRMD4BQ9Y2L6 1034 aa13.86□□□□□ -0.19
LINC00538-201ENST00000626109 PDAP1Q13442 181 aaKnown RBP13.85□□□□□ -0.19
LINC00538-201ENST00000626109 BIRC2Q13490 618 aa13.85□□□□□ -0.19
LINC00538-201ENST00000626109 POTEDQ86YR6 584 aa13.85□□□□□ -0.19
LINC00538-201ENST00000626109 NLRP3Q96P20 1036 aa13.85□□□□□ -0.19
LINC00538-201ENST00000626109 NRBP1Q9UHY1 535 aa13.85□□□□□ -0.19
LINC00538-201ENST00000626109 GNEQ9Y223 722 aaKnown RBP13.85□□□□□ -0.19
LINC00538-201ENST00000626109 NRDCO43847 1150 aa13.84□□□□□ -0.19
LINC00538-201ENST00000626109 MCM4P33991 863 aa13.84□□□□□ -0.19
LINC00538-201ENST00000626109 CTSWP56202 376 aa13.84□□□□□ -0.19
LINC00538-201ENST00000626109 CCDC144BQ3MJ40 725 aa13.84□□□□□ -0.19
LINC00538-201ENST00000626109 KAZALD1Q96I82 304 aa13.84□□□□□ -0.19
LINC00538-201ENST00000626109 DDX60Q8IY21 1712 aaKnown RBP13.84□□□□□ -0.19
LINC00538-201ENST00000626109 FOXO4P98177 505 aa13.84□□□□□ -0.19
LINC00538-201ENST00000626109 EPHA10Q5JZY3 1008 aa13.84□□□□□ -0.19
LINC00538-201ENST00000626109 RPS6KC1Q96S38 1066 aa13.84□□□□□ -0.19
LINC00538-201ENST00000626109 SGIP1Q9BQI5 828 aa13.84□□□□□ -0.19
LINC00538-201ENST00000626109 BRIP1Q9BX63 1249 aa13.84□□□□□ -0.19
LINC00538-201ENST00000626109 CHMP3Q9Y3E7 222 aa13.84□□□□□ -0.19
LINC00538-201ENST00000626109 C10orf71Q711Q0 1435 aa13.83□□□□□ -0.2
LINC00538-201ENST00000626109 DDX11L8A8MPP1 907 aa13.83□□□□□ -0.2
LINC00538-201ENST00000626109 PDE6BP35913 854 aa13.83□□□□□ -0.2
LINC00538-201ENST00000626109 PTGER2P43116 358 aa13.83□□□□□ -0.2
LINC00538-201ENST00000626109 NBPF20Q3BBV1 942 aa13.83□□□□□ -0.2
LINC00538-201ENST00000626109 RABL6Q3YEC7 729 aaPredicted RBP13.83□□□□□ -0.2
LINC00538-201ENST00000626109 LMBR1LQ6UX01 489 aa13.83□□□□□ -0.2
LINC00538-201ENST00000626109 ANKRD44Q8N8A2 993 aa13.83□□□□□ -0.2
LINC00538-201ENST00000626109 CCDC102AQ96A19 550 aa13.83□□□□□ -0.2
LINC00538-201ENST00000626109 TNRC6CQ9HCJ0 1690 aaKnown RBP13.82□□□□□ -0.2
LINC00538-201ENST00000626109 CCDC152Q4G0S7 254 aa13.82□□□□□ -0.2
LINC00538-201ENST00000626109 CEP85Q6P2H3 762 aa13.82□□□□□ -0.2
LINC00538-201ENST00000626109 NPAS4Q8IUM7 802 aa13.82□□□□□ -0.2
LINC00538-201ENST00000626109 RPAP2Q8IXW5 612 aaPredicted RBP13.82□□□□□ -0.2
LINC00538-201ENST00000626109 ATL2Q8NHH9 583 aa13.82□□□□□ -0.2
LINC00538-201ENST00000626109 DHX38Q92620 1227 aaKnown RBP13.82□□□□□ -0.2
LINC00538-201ENST00000626109 SNRKQ9NRH2 765 aa13.82□□□□□ -0.2
LINC00538-201ENST00000626109 GOLIM4O00461 696 aa13.82□□□□□ -0.2
LINC00538-201ENST00000626109 APPP05067 770 aa13.82□□□□□ -0.2
LINC00538-201ENST00000626109 IBSPP21815 317 aaPredicted RBP13.82□□□□□ -0.2
LINC00538-201ENST00000626109 MTX1Q13505 466 aa13.82□□□□□ -0.2
LINC00538-201ENST00000626109 TCEAL1Q15170 157 aa13.82□□□□□ -0.2
LINC00538-201ENST00000626109 SF3B3Q15393 1217 aaKnown RBP13.82□□□□□ -0.2
LINC00538-201ENST00000626109 CSPP1Q1MSJ5 1256 aa13.82□□□□□ -0.2
LINC00538-201ENST00000626109 TTLL11Q8NHH1 800 aa13.82□□□□□ -0.2
LINC00538-201ENST00000626109 PIF1Q9H611 641 aa13.82□□□□□ -0.2
LINC00538-201ENST00000626109 CFAP69A5D8W1 941 aa13.81□□□□□ -0.2
LINC00538-201ENST00000626109 TMEM88BA6NKF7 163 aa13.81□□□□□ -0.2
LINC00538-201ENST00000626109 SRGAP3O43295 1099 aa13.81□□□□□ -0.2
LINC00538-201ENST00000626109 HMMRO75330 724 aa13.81□□□□□ -0.2
LINC00538-201ENST00000626109 CSF1RP07333 972 aa13.81□□□□□ -0.2
LINC00538-201ENST00000626109 ERCC5P28715 1186 aaPredicted RBP13.81□□□□□ -0.2
LINC00538-201ENST00000626109 C3orf67Q6ZVT6 689 aa13.81□□□□□ -0.2
LINC00538-201ENST00000626109 TANGO6Q9C0B7 1094 aa13.81□□□□□ -0.2
LINC00538-201ENST00000626109 NUB1Q9Y5A7 615 aa13.81□□□□□ -0.2
LINC00538-201ENST00000626109 MYH3P11055 1940 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms