RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 HIBADHP31937 336 aaKnown RBP23.93■■□□□ 1.42
CCDC28A-203ENST00000617445 NF2P35240 595 aa23.93■■□□□ 1.42
CCDC28A-203ENST00000617445 DLGAP5Q15398 846 aa23.93■■□□□ 1.42
CCDC28A-203ENST00000617445 API5Q9BZZ5 524 aaKnown RBP23.93■■□□□ 1.42
CCDC28A-203ENST00000617445 FAM205AQ6ZU69 1335 aa23.92■■□□□ 1.42
CCDC28A-203ENST00000617445 FAM155AB1AL88 458 aaPredicted RBP23.92■■□□□ 1.42
CCDC28A-203ENST00000617445 CERS5Q8N5B7 392 aa23.92■■□□□ 1.42
CCDC28A-203ENST00000617445 TDRD7Q8NHU6 1098 aaKnown RBP23.92■■□□□ 1.42
CCDC28A-203ENST00000617445 PAPPA2Q9BXP8 1791 aa23.92■■□□□ 1.42
CCDC28A-203ENST00000617445 REM2Q8IYK8 340 aaPredicted RBP23.91■■□□□ 1.42
CCDC28A-203ENST00000617445 FAM84BQ96KN1 310 aaPredicted RBP23.91■■□□□ 1.42
CCDC28A-203ENST00000617445 NOB1Q9ULX3 412 aaKnown RBP23.91■■□□□ 1.42
CCDC28A-203ENST00000617445 METTL24Q5JXM2 366 aa23.9■■□□□ 1.42
CCDC28A-203ENST00000617445 MYO1BO43795 1136 aa23.89■■□□□ 1.41
CCDC28A-203ENST00000617445 PDE8BO95263 885 aa23.89■■□□□ 1.41
CCDC28A-203ENST00000617445 SLC10A3P09131 477 aa23.89■■□□□ 1.41
CCDC28A-203ENST00000617445 ARHGAP45Q92619 1136 aa23.89■■□□□ 1.41
CCDC28A-203ENST00000617445 COL1A1P02452 1464 aaPredicted RBP23.88■■□□□ 1.41
CCDC28A-203ENST00000617445 UBTFL1P0CB47 393 aaPredicted RBP23.88■■□□□ 1.41
CCDC28A-203ENST00000617445 GYG1P46976 350 aa23.88■■□□□ 1.41
CCDC28A-203ENST00000617445 RARSP54136 660 aaKnown RBP23.88■■□□□ 1.41
CCDC28A-203ENST00000617445 LRRC24Q50LG9 513 aa23.88■■□□□ 1.41
CCDC28A-203ENST00000617445 CAVIN4Q5BKX8 364 aa23.88■■□□□ 1.41
CCDC28A-203ENST00000617445 FBXO33Q7Z6M2 555 aa23.88■■□□□ 1.41
CCDC28A-203ENST00000617445 VPS37DQ86XT2 251 aa23.88■■□□□ 1.41
CCDC28A-203ENST00000617445 KIF16BQ96L93 1317 aa23.87■■□□□ 1.41
CCDC28A-203ENST00000617445 KIF23Q02241 960 aaPredicted RBP23.87■■□□□ 1.41
CCDC28A-203ENST00000617445 CFAP100Q494V2 611 aa23.87■■□□□ 1.41
CCDC28A-203ENST00000617445 VGLL2Q8N8G2 317 aa23.87■■□□□ 1.41
CCDC28A-203ENST00000617445 ZIC5Q96T25 663 aa23.87■■□□□ 1.41
CCDC28A-203ENST00000617445 FBXO3Q9UK99 471 aa23.87■■□□□ 1.41
CCDC28A-203ENST00000617445 PPP2R3BQ9Y5P8 575 aa23.87■■□□□ 1.41
CCDC28A-203ENST00000617445 ECM29Q5VYK3 1845 aa23.87■■□□□ 1.41
CCDC28A-203ENST00000617445 MFSD14BQ5SR56 506 aa23.86■■□□□ 1.41
CCDC28A-203ENST00000617445 SAGE1Q9NXZ1 904 aa23.86■■□□□ 1.41
CCDC28A-203ENST00000617445 SCAF8Q9UPN6 1271 aaKnown RBP23.86■■□□□ 1.41
CCDC28A-203ENST00000617445 AKAP11Q9UKA4 1901 aa23.85■■□□□ 1.41
CCDC28A-203ENST00000617445 SPDYE2BA6NHP3 402 aa23.85■■□□□ 1.41
CCDC28A-203ENST00000617445 F8W031 263 aaPredicted RBP23.85■■□□□ 1.41
CCDC28A-203ENST00000617445 SPDYE6P0CI01 402 aa23.85■■□□□ 1.41
CCDC28A-203ENST00000617445 TTLL12Q14166 644 aaPredicted RBP23.85■■□□□ 1.41
CCDC28A-203ENST00000617445 PRAMEF18Q5VWM3 479 aa23.85■■□□□ 1.41
CCDC28A-203ENST00000617445 ARMC9Q7Z3E5 817 aa23.85■■□□□ 1.41
CCDC28A-203ENST00000617445 DEFB129Q9H1M3 183 aa23.85■■□□□ 1.41
CCDC28A-203ENST00000617445 EYA2O00167 538 aa23.84■■□□□ 1.41
CCDC28A-203ENST00000617445 CAPN15O75808 1086 aa23.84■■□□□ 1.41
CCDC28A-203ENST00000617445 IFIT1P09914 478 aaKnown RBP23.84■■□□□ 1.41
CCDC28A-203ENST00000617445 RFX5P48382 616 aaPredicted RBP23.84■■□□□ 1.41
CCDC28A-203ENST00000617445 PUM3Q15397 648 aaKnown RBP23.84■■□□□ 1.41
CCDC28A-203ENST00000617445 RASAL3Q86YV0 1011 aa23.84■■□□□ 1.41
CCDC28A-203ENST00000617445 TBC1D22AQ8WUA7 517 aa23.84■■□□□ 1.41
CCDC28A-203ENST00000617445 SERPINA10Q9UK55 444 aa23.84■■□□□ 1.41
CCDC28A-203ENST00000617445 UBE2Q2LH0YL09 131 aa23.83■■□□□ 1.41
CCDC28A-203ENST00000617445 IPO8O15397 1037 aaKnown RBP23.83■■□□□ 1.41
CCDC28A-203ENST00000617445 PTPN12Q05209 780 aaKnown RBP23.83■■□□□ 1.41
CCDC28A-203ENST00000617445 KLHDC4Q8TBB5 520 aa23.83■■□□□ 1.41
CCDC28A-203ENST00000617445 PRMT6Q96LA8 375 aaPredicted RBP23.83■■□□□ 1.41
CCDC28A-203ENST00000617445 JAG2Q9Y219 1238 aa23.83■■□□□ 1.41
CCDC28A-203ENST00000617445 FRAT2O75474 233 aaPredicted RBP23.82■■□□□ 1.4
CCDC28A-203ENST00000617445 RBM5P52756 815 aaKnown RBP eCLIP23.82■■□□□ 1.4
CCDC28A-203ENST00000617445 CSRNP1Q96S65 589 aa23.82■■□□□ 1.4
CCDC28A-203ENST00000617445 TSKSQ9UJT2 592 aa23.82■■□□□ 1.4
CCDC28A-203ENST00000617445 TTF2Q9UNY4 1162 aaKnown RBP23.82■■□□□ 1.4
CCDC28A-203ENST00000617445 CIAO1O76071 339 aa23.81■■□□□ 1.4
CCDC28A-203ENST00000617445 FGFR2P21802 821 aa23.81■■□□□ 1.4
CCDC28A-203ENST00000617445 SUPT20HL1Q3ZLR7 823 aa23.81■■□□□ 1.4
CCDC28A-203ENST00000617445 INTS3Q68E01 1043 aaKnown RBP23.81■■□□□ 1.4
CCDC28A-203ENST00000617445 MOB2Q70IA6 237 aa23.81■■□□□ 1.4
CCDC28A-203ENST00000617445 CASP8AP2Q9UKL3 1982 aa23.81■■□□□ 1.4
CCDC28A-203ENST00000617445 HDLBPQ00341 1268 aaKnown RBP23.8■■□□□ 1.4
CCDC28A-203ENST00000617445 DIEXFQ68CQ4 756 aaKnown RBP23.8■■□□□ 1.4
CCDC28A-203ENST00000617445 ARAP2Q8WZ64 1704 aa23.8■■□□□ 1.4
CCDC28A-203ENST00000617445 LPIN2Q92539 896 aa23.8■■□□□ 1.4
CCDC28A-203ENST00000617445 SUGT1Q9Y2Z0 365 aa23.8■■□□□ 1.4
CCDC28A-203ENST00000617445 UNCXA6NJT0 531 aa23.79■■□□□ 1.4
CCDC28A-203ENST00000617445 PPP1R12BO60237 982 aaPredicted RBP23.79■■□□□ 1.4
CCDC28A-203ENST00000617445 GNAI3P08754 354 aa23.79■■□□□ 1.4
CCDC28A-203ENST00000617445 SLC5A1P13866 664 aa23.79■■□□□ 1.4
CCDC28A-203ENST00000617445 TNFAIP1Q13829 316 aa23.79■■□□□ 1.4
CCDC28A-203ENST00000617445 MRIQ9BWK5 157 aa23.79■■□□□ 1.4
CCDC28A-203ENST00000617445 RNF186Q9NXI6 227 aa23.79■■□□□ 1.4
CCDC28A-203ENST00000617445 BCAMP50895 628 aa23.78■■□□□ 1.4
CCDC28A-203ENST00000617445 MAP3K11Q16584 847 aa23.78■■□□□ 1.4
CCDC28A-203ENST00000617445 LDLRAD1Q5T700 205 aa23.78■■□□□ 1.4
CCDC28A-203ENST00000617445 ATG9AQ7Z3C6 839 aa23.78■■□□□ 1.4
CCDC28A-203ENST00000617445 VEZTQ9HBM0 779 aa23.78■■□□□ 1.4
CCDC28A-203ENST00000617445 PCDHAC2Q9Y5I4 1007 aa23.78■■□□□ 1.4
CCDC28A-203ENST00000617445 LRRFIP2Q9Y608 721 aaKnown RBP23.78■■□□□ 1.4
CCDC28A-203ENST00000617445 CLRN2A0PK11 232 aa23.77■■□□□ 1.4
CCDC28A-203ENST00000617445 SPDYE2Q495Y8 402 aa23.77■■□□□ 1.4
CCDC28A-203ENST00000617445 DZIP1LQ8IYY4 767 aaKnown RBP23.77■■□□□ 1.4
CCDC28A-203ENST00000617445 MIER1Q8N108 512 aa23.77■■□□□ 1.4
CCDC28A-203ENST00000617445 CEP126Q9P2H0 1117 aa23.77■■□□□ 1.4
CCDC28A-203ENST00000617445 TRPA1O75762 1119 aa23.76■■□□□ 1.39
CCDC28A-203ENST00000617445 CRKP46108 304 aa23.76■■□□□ 1.39
CCDC28A-203ENST00000617445 CHAF1AQ13111 956 aaPredicted RBP23.76■■□□□ 1.39
CCDC28A-203ENST00000617445 ZNF70Q9UC06 446 aaPredicted RBP23.76■■□□□ 1.39
CCDC28A-203ENST00000617445 ANGEL1Q9UNK9 670 aaKnown RBP23.76■■□□□ 1.39
CCDC28A-203ENST00000617445 IQSEC3Q9UPP2 1182 aaPredicted RBP23.76■■□□□ 1.39
CCDC28A-203ENST00000617445 IL15P40933 162 aaPredicted RBP23.75■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms