RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 CCDC30Q5VVM6 783 aa13.03□□□□□ -0.32
TRIM28-210ENST00000597618 NBPF11Q86T75 865 aa13.03□□□□□ -0.32
TRIM28-210ENST00000597618 COLQQ9Y215 455 aaPredicted RBP13.03□□□□□ -0.32
TRIM28-210ENST00000597618 MYBBP1AQ9BQG0 1328 aaKnown RBP13.03□□□□□ -0.32
TRIM28-210ENST00000597618 TESPA1A2RU30 521 aaPredicted RBP13.02□□□□□ -0.33
TRIM28-210ENST00000597618 SPDYE2BA6NHP3 402 aa13.02□□□□□ -0.33
TRIM28-210ENST00000597618 SPDYE6P0CI01 402 aa13.02□□□□□ -0.33
TRIM28-210ENST00000597618 SLC9C1Q4G0N8 1177 aa13.02□□□□□ -0.33
TRIM28-210ENST00000597618 KSR2Q6VAB6 950 aa13.02□□□□□ -0.33
TRIM28-210ENST00000597618 ANKRD13AQ8IZ07 590 aa13.02□□□□□ -0.33
TRIM28-210ENST00000597618 MPHOSPH8Q99549 860 aa13.02□□□□□ -0.33
TRIM28-210ENST00000597618 SPEF2Q9C093 1822 aa13.02□□□□□ -0.33
TRIM28-210ENST00000597618 CLRN2A0PK11 232 aa13.01□□□□□ -0.33
TRIM28-210ENST00000597618 PI4KAP2A4QPH2 592 aa13.01□□□□□ -0.33
TRIM28-210ENST00000597618 ITGA6P23229 1130 aa13.01□□□□□ -0.33
TRIM28-210ENST00000597618 GJA5P36382 358 aa13.01□□□□□ -0.33
TRIM28-210ENST00000597618 UBE3BQ7Z3V4 1068 aa13.01□□□□□ -0.33
TRIM28-210ENST00000597618 CERS5Q8N5B7 392 aa13.01□□□□□ -0.33
TRIM28-210ENST00000597618 PI4KAP1Q8N8J0 262 aa13.01□□□□□ -0.33
TRIM28-210ENST00000597618 PTPN18Q99952 460 aa13.01□□□□□ -0.33
TRIM28-210ENST00000597618 VEZTQ9HBM0 779 aa13.01□□□□□ -0.33
TRIM28-210ENST00000597618 CD209Q9NNX6 404 aa13.01□□□□□ -0.33
TRIM28-210ENST00000597618 MYH3P11055 1940 aa13□□□□□ -0.33
TRIM28-210ENST00000597618 NEURL1BA8MQ27 555 aa13□□□□□ -0.33
TRIM28-210ENST00000597618 CHRNDQ07001 517 aa13□□□□□ -0.33
TRIM28-210ENST00000597618 SLC4A8Q2Y0W8 1093 aa13□□□□□ -0.33
TRIM28-210ENST00000597618 CFAP100Q494V2 611 aa13□□□□□ -0.33
TRIM28-210ENST00000597618 NBPF12Q5TAG4 269 aaPredicted RBP13□□□□□ -0.33
TRIM28-210ENST00000597618 C8orf58Q8NAV2 365 aa13□□□□□ -0.33
TRIM28-210ENST00000597618 PLA2G12BQ9BX93 195 aa13□□□□□ -0.33
TRIM28-210ENST00000597618 ADAMTS8Q9UP79 889 aa13□□□□□ -0.33
TRIM28-210ENST00000597618 PTCH2Q9Y6C5 1203 aa13□□□□□ -0.33
TRIM28-210ENST00000597618 F8W031 263 aaPredicted RBP12.99□□□□□ -0.33
TRIM28-210ENST00000597618 H7C1W4 665 aa12.99□□□□□ -0.33
TRIM28-210ENST00000597618 USP2O75604 605 aaPredicted RBP12.99□□□□□ -0.33
TRIM28-210ENST00000597618 FKBP1AP62942 108 aaKnown RBP12.99□□□□□ -0.33
TRIM28-210ENST00000597618 CAP1Q01518 475 aa12.99□□□□□ -0.33
TRIM28-210ENST00000597618 TNFAIP1Q13829 316 aa12.99□□□□□ -0.33
TRIM28-210ENST00000597618 RASA3Q14644 834 aa12.99□□□□□ -0.33
TRIM28-210ENST00000597618 CWF19L2Q2TBE0 894 aaKnown RBP12.99□□□□□ -0.33
TRIM28-210ENST00000597618 C15orf52Q6ZUT6 534 aaKnown RBP12.99□□□□□ -0.33
TRIM28-210ENST00000597618 ZNF804AQ7Z570 1209 aa12.99□□□□□ -0.33
TRIM28-210ENST00000597618 OPTNQ96CV9 577 aa12.99□□□□□ -0.33
TRIM28-210ENST00000597618 ELP3Q9H9T3 547 aa12.99□□□□□ -0.33
TRIM28-210ENST00000597618 ZFYVE28Q9HCC9 887 aa12.99□□□□□ -0.33
TRIM28-210ENST00000597618 PCDHAC2Q9Y5I4 1007 aa12.99□□□□□ -0.33
TRIM28-210ENST00000597618 H0YGN5 161 aa12.98□□□□□ -0.33
TRIM28-210ENST00000597618 IL1R1P14778 569 aa12.98□□□□□ -0.33
TRIM28-210ENST00000597618 TAF1CQ15572 869 aaPredicted RBP12.98□□□□□ -0.33
TRIM28-210ENST00000597618 MS4A4AQ96JQ5 239 aa12.98□□□□□ -0.33
TRIM28-210ENST00000597618 PRMT6Q96LA8 375 aaPredicted RBP12.98□□□□□ -0.33
TRIM28-210ENST00000597618 STK31Q9BXU1 1019 aa12.98□□□□□ -0.33
TRIM28-210ENST00000597618 ECM29Q5VYK3 1845 aa12.97□□□□□ -0.33
TRIM28-210ENST00000597618 IRS2Q9Y4H2 1338 aa12.97□□□□□ -0.33
TRIM28-210ENST00000597618 WDHD1O75717 1129 aaPredicted RBP12.97□□□□□ -0.33
TRIM28-210ENST00000597618 GTF2A2P52657 109 aa12.97□□□□□ -0.33
TRIM28-210ENST00000597618 RBM5P52756 815 aaKnown RBP eCLIP12.97□□□□□ -0.33
TRIM28-210ENST00000597618 BRI3BPQ8WY22 251 aa12.97□□□□□ -0.33
TRIM28-210ENST00000597618 AOX1Q06278 1338 aa12.96□□□□□ -0.33
TRIM28-210ENST00000597618 A0A0C4DFX4 3053 aa12.96□□□□□ -0.33
TRIM28-210ENST00000597618 CCL15-CCL14A0A0B4J2E2 113 aa12.96□□□□□ -0.33
TRIM28-210ENST00000597618 ANKRD18BA2A2Z9 1011 aa12.96□□□□□ -0.33
TRIM28-210ENST00000597618 CSF1RP07333 972 aa12.96□□□□□ -0.33
TRIM28-210ENST00000597618 GCKRQ14397 625 aa12.96□□□□□ -0.33
TRIM28-210ENST00000597618 CCL15Q16663 113 aa12.96□□□□□ -0.33
TRIM28-210ENST00000597618 SPDYE2Q495Y8 402 aa12.96□□□□□ -0.33
TRIM28-210ENST00000597618 OTUD5Q96G74 571 aa12.96□□□□□ -0.33
TRIM28-210ENST00000597618 MYH16Q9H6N6 1097 aa12.96□□□□□ -0.33
TRIM28-210ENST00000597618 APAF1O14727 1248 aa12.95□□□□□ -0.34
TRIM28-210ENST00000597618 GNRH1P01148 92 aa12.95□□□□□ -0.34
TRIM28-210ENST00000597618 CASP7P55210 303 aa12.95□□□□□ -0.34
TRIM28-210ENST00000597618 KIF22Q14807 665 aa12.95□□□□□ -0.34
TRIM28-210ENST00000597618 CHRDL2Q6WN34 429 aa12.95□□□□□ -0.34
TRIM28-210ENST00000597618 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.95□□□□□ -0.34
TRIM28-210ENST00000597618 TSPYL6Q8N831 410 aa12.95□□□□□ -0.34
TRIM28-210ENST00000597618 CSADQ9Y600 493 aa12.95□□□□□ -0.34
TRIM28-210ENST00000597618 OTOFQ9HC10 1997 aa12.94□□□□□ -0.34
TRIM28-210ENST00000597618 LAMA3Q16787 3333 aa12.94□□□□□ -0.34
TRIM28-210ENST00000597618 SNAP23O00161 211 aa12.94□□□□□ -0.34
TRIM28-210ENST00000597618 TAF5LO75529 589 aa12.94□□□□□ -0.34
TRIM28-210ENST00000597618 MYCP01106 439 aaPredicted RBP12.94□□□□□ -0.34
TRIM28-210ENST00000597618 PRMT2P55345 433 aa12.94□□□□□ -0.34
TRIM28-210ENST00000597618 LACTBP83111 547 aaPredicted RBP12.94□□□□□ -0.34
TRIM28-210ENST00000597618 VGLL4Q14135 290 aa12.94□□□□□ -0.34
TRIM28-210ENST00000597618 FAM43AQ8N2R8 423 aa12.94□□□□□ -0.34
TRIM28-210ENST00000597618 SH3TC2Q8TF17 1288 aa12.94□□□□□ -0.34
TRIM28-210ENST00000597618 CNKSR2Q8WXI2 1034 aa12.94□□□□□ -0.34
TRIM28-210ENST00000597618 ZCCHC17Q9NP64 241 aaKnown RBP12.94□□□□□ -0.34
TRIM28-210ENST00000597618 ZNF70Q9UC06 446 aaPredicted RBP12.94□□□□□ -0.34
TRIM28-210ENST00000597618 SERPINA10Q9UK55 444 aa12.94□□□□□ -0.34
TRIM28-210ENST00000597618 JAG2Q9Y219 1238 aa12.94□□□□□ -0.34
TRIM28-210ENST00000597618 TLR2O60603 784 aa12.93□□□□□ -0.34
TRIM28-210ENST00000597618 TNNI2P48788 182 aa12.93□□□□□ -0.34
TRIM28-210ENST00000597618 MAP3K9P80192 1104 aa12.93□□□□□ -0.34
TRIM28-210ENST00000597618 IFIT5Q13325 482 aaKnown RBP12.93□□□□□ -0.34
TRIM28-210ENST00000597618 HELBQ8NG08 1087 aaPredicted RBP12.93□□□□□ -0.34
TRIM28-210ENST00000597618 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.93□□□□□ -0.342e-6■□□□□ 8
TRIM28-210ENST00000597618 TEPSINQ96N21 525 aa12.93□□□□□ -0.34
TRIM28-210ENST00000597618 FAM205AQ6ZU69 1335 aa12.92□□□□□ -0.34
TRIM28-210ENST00000597618 CUL9Q8IWT3 2517 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms