RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 WASHC4Q2M389 1173 aa11.11□□□□□ -0.63
SS18-220ENST00000582092 FAM227BQ96M60 508 aa11.11□□□□□ -0.63
SS18-220ENST00000582092 VPS33BQ9H267 617 aa11.11□□□□□ -0.63
SS18-220ENST00000582092 RRAGCQ9HB90 399 aa11.11□□□□□ -0.63
SS18-220ENST00000582092 CWC22Q9HCG8 908 aaKnown RBP11.11□□□□□ -0.63
SS18-220ENST00000582092 NMRK2Q9NPI5 230 aa11.11□□□□□ -0.63
SS18-220ENST00000582092 CIZ1Q9ULV3 898 aaPredicted RBP11.11□□□□□ -0.63
SS18-220ENST00000582092 U3KPZ7 1027 aaPredicted RBP11.11□□□□□ -0.63
SS18-220ENST00000582092 DDX60Q8IY21 1712 aaKnown RBP11.11□□□□□ -0.63
SS18-220ENST00000582092 RFX7Q2KHR2 1363 aa11.11□□□□□ -0.63
SS18-220ENST00000582092 CCDC171Q6TFL3 1326 aa11.1□□□□□ -0.63
SS18-220ENST00000582092 RNF113AO15541 343 aaKnown RBP11.1□□□□□ -0.63
SS18-220ENST00000582092 ADORA1P30542 326 aa11.1□□□□□ -0.63
SS18-220ENST00000582092 GRAPQ13588 217 aa11.1□□□□□ -0.63
SS18-220ENST00000582092 KRT32Q14532 448 aa11.1□□□□□ -0.63
SS18-220ENST00000582092 SF3B3Q15393 1217 aaKnown RBP11.1□□□□□ -0.63
SS18-220ENST00000582092 VPS37DQ86XT2 251 aa11.1□□□□□ -0.63
SS18-220ENST00000582092 SP8Q8IXZ3 490 aa11.1□□□□□ -0.63
SS18-220ENST00000582092 HELBQ8NG08 1087 aaPredicted RBP11.1□□□□□ -0.63
SS18-220ENST00000582092 RBM46Q8TBY0 533 aaKnown RBP11.1□□□□□ -0.63
SS18-220ENST00000582092 GRAPLQ8TC17 118 aaPredicted RBP11.1□□□□□ -0.63
SS18-220ENST00000582092 EDC3Q96F86 508 aaKnown RBP11.1□□□□□ -0.63
SS18-220ENST00000582092 SEC31BQ9NQW1 1179 aa11.1□□□□□ -0.63
SS18-220ENST00000582092 SNRKQ9NRH2 765 aa11.1□□□□□ -0.63
SS18-220ENST00000582092 FOXD4L1Q9NU39 408 aa11.1□□□□□ -0.63
SS18-220ENST00000582092 HMG20BQ9P0W2 317 aa11.1□□□□□ -0.63
SS18-220ENST00000582092 ATP6V0A2Q9Y487 856 aa11.1□□□□□ -0.63
SS18-220ENST00000582092 RBM8AQ9Y5S9 174 aaKnown RBP11.1□□□□□ -0.63
SS18-220ENST00000582092 CYP46A1Q9Y6A2 500 aa11.1□□□□□ -0.63
SS18-220ENST00000582092 SCN4AP35499 1836 aa11.09□□□□□ -0.63
SS18-220ENST00000582092 TAF1P21675 1872 aa11.09□□□□□ -0.63
SS18-220ENST00000582092 RTL9Q8NET4 1388 aa11.09□□□□□ -0.63
SS18-220ENST00000582092 A0A0D9SFI3 127 aa11.09□□□□□ -0.63
SS18-220ENST00000582092 IQCA1LA6NCM1 817 aa11.09□□□□□ -0.63
SS18-220ENST00000582092 EIF6P56537 245 aaKnown RBP11.09□□□□□ -0.63
SS18-220ENST00000582092 FSTL1Q12841 308 aa11.09□□□□□ -0.63
SS18-220ENST00000582092 NFKBIBQ15653 356 aa11.09□□□□□ -0.63
SS18-220ENST00000582092 CAVIN4Q5BKX8 364 aa11.09□□□□□ -0.63
SS18-220ENST00000582092 MPNDQ8N594 471 aa11.09□□□□□ -0.63
SS18-220ENST00000582092 JAKMIP1Q96N16 626 aaKnown RBP11.09□□□□□ -0.63
SS18-220ENST00000582092 ZNF277Q9NRM2 450 aaPredicted RBP11.09□□□□□ -0.63
SS18-220ENST00000582092 SNX14Q9Y5W7 946 aa11.09□□□□□ -0.63
SS18-220ENST00000582092 NDUFB9Q9Y6M9 179 aa11.09□□□□□ -0.63
SS18-220ENST00000582092 WDR90Q96KV7 1748 aa11.09□□□□□ -0.63
SS18-220ENST00000582092 FRAT2O75474 233 aaPredicted RBP11.08□□□□□ -0.64
SS18-220ENST00000582092 CASTP20810 708 aaKnown RBP11.08□□□□□ -0.64
SS18-220ENST00000582092 PTH1RQ03431 593 aa11.08□□□□□ -0.64
SS18-220ENST00000582092 CREB3L3Q68CJ9 461 aa11.08□□□□□ -0.64
SS18-220ENST00000582092 DPP8Q6V1X1 898 aaPredicted RBP11.08□□□□□ -0.64
SS18-220ENST00000582092 NOL8Q76FK4 1167 aaKnown RBP11.08□□□□□ -0.64
SS18-220ENST00000582092 NIM1KQ8IY84 436 aa11.08□□□□□ -0.64
SS18-220ENST00000582092 LARGE2Q8N3Y3 721 aa11.08□□□□□ -0.64
SS18-220ENST00000582092 SMC1BQ8NDV3 1235 aa11.08□□□□□ -0.64
SS18-220ENST00000582092 MAP4K1Q92918 833 aa11.08□□□□□ -0.64
SS18-220ENST00000582092 ZNF512BQ96KM6 892 aaPredicted RBP11.08□□□□□ -0.64
SS18-220ENST00000582092 ANKRD2Q9GZV1 360 aa11.08□□□□□ -0.64
SS18-220ENST00000582092 CTNNA3Q9UI47 895 aa11.08□□□□□ -0.64
SS18-220ENST00000582092 GOLGA6L22H0YM25 854 aa11.07□□□□□ -0.64
SS18-220ENST00000582092 PPIP5K2O43314 1243 aa11.07□□□□□ -0.64
SS18-220ENST00000582092 TAF5LO75529 589 aa11.07□□□□□ -0.64
SS18-220ENST00000582092 HSPA6P17066 643 aa11.07□□□□□ -0.64
SS18-220ENST00000582092 ZAP70P43403 619 aa11.07□□□□□ -0.64
SS18-220ENST00000582092 PRELPP51888 382 aa11.07□□□□□ -0.64
SS18-220ENST00000582092 RPS8P62241 208 aaKnown RBP11.07□□□□□ -0.64
SS18-220ENST00000582092 NUCB2P80303 420 aa11.07□□□□□ -0.64
SS18-220ENST00000582092 FGD1P98174 961 aa11.07□□□□□ -0.64
SS18-220ENST00000582092 CHRNDQ07001 517 aa11.07□□□□□ -0.64
SS18-220ENST00000582092 ANKRD1Q15327 319 aa11.07□□□□□ -0.64
SS18-220ENST00000582092 CCDC102BQ68D86 513 aa11.07□□□□□ -0.64
SS18-220ENST00000582092 OLFM4Q6UX06 510 aa11.07□□□□□ -0.64
SS18-220ENST00000582092 C3orf67Q6ZVT6 689 aa11.07□□□□□ -0.64
SS18-220ENST00000582092 GBP4Q96PP9 640 aa11.07□□□□□ -0.64
SS18-220ENST00000582092 UPF3BQ9BZI7 483 aaKnown RBP11.07□□□□□ -0.64
SS18-220ENST00000582092 TM6SF1Q9BZW5 370 aa11.07□□□□□ -0.64
SS18-220ENST00000582092 PDRG1Q9NUG6 133 aa11.07□□□□□ -0.64
SS18-220ENST00000582092 BSDC1Q9NW68 430 aaPredicted RBP11.07□□□□□ -0.64
SS18-220ENST00000582092 PALD1Q9ULE6 856 aa11.07□□□□□ -0.64
SS18-220ENST00000582092 IDH1O75874 414 aaKnown RBP11.06□□□□□ -0.64
SS18-220ENST00000582092 PTMSP20962 102 aa11.06□□□□□ -0.64
SS18-220ENST00000582092 MAP3K12Q12852 859 aa11.06□□□□□ -0.64
SS18-220ENST00000582092 UBE4AQ14139 1066 aa11.06□□□□□ -0.64
SS18-220ENST00000582092 NECTIN1Q15223 517 aa11.06□□□□□ -0.64
SS18-220ENST00000582092 ZMYM1Q5SVZ6 1142 aa11.06□□□□□ -0.64
SS18-220ENST00000582092 BLOC1S2Q6QNY1 142 aa11.06□□□□□ -0.64
SS18-220ENST00000582092 ZSCAN31Q96LW9 406 aaPredicted RBP11.06□□□□□ -0.64
SS18-220ENST00000582092 FZD9O00144 591 aa11.05□□□□□ -0.64
SS18-220ENST00000582092 SLC27A2O14975 620 aa11.05□□□□□ -0.64
SS18-220ENST00000582092 DDNO94850 711 aaPredicted RBP11.05□□□□□ -0.64
SS18-220ENST00000582092 CD2BP2O95400 341 aaKnown RBP11.05□□□□□ -0.64
SS18-220ENST00000582092 HMGB1P09429 215 aaKnown RBP11.05□□□□□ -0.64
SS18-220ENST00000582092 LMOD1P29536 600 aaPredicted RBP11.05□□□□□ -0.64
SS18-220ENST00000582092 APLP1P51693 650 aa11.05□□□□□ -0.64
SS18-220ENST00000582092 VPS53Q5VIR6 699 aa11.05□□□□□ -0.64
SS18-220ENST00000582092 RUFY3Q7L099 469 aa11.05□□□□□ -0.64
SS18-220ENST00000582092 GPC2Q8N158 579 aa11.05□□□□□ -0.64
SS18-220ENST00000582092 VGLL2Q8N8G2 317 aa11.05□□□□□ -0.64
SS18-220ENST00000582092 SPATA5Q8NB90 893 aa11.05□□□□□ -0.64
SS18-220ENST00000582092 APPBP2Q92624 585 aa11.05□□□□□ -0.64
SS18-220ENST00000582092 IL17RAQ96F46 866 aa11.05□□□□□ -0.64
SS18-220ENST00000582092 EYA3Q99504 573 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms