RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 FAM205AQ6ZU69 1335 aa16.05■□□□□ 0.16
CLK3-224ENST00000568605 ZNF280AP59817 542 aaPredicted RBP16.05■□□□□ 0.16
CLK3-224ENST00000568605 TBC1D10BQ4KMP7 808 aaPredicted RBP16.05■□□□□ 0.16
CLK3-224ENST00000568605 FBXO33Q7Z6M2 555 aa16.05■□□□□ 0.16
CLK3-224ENST00000568605 RPAP2Q8IXW5 612 aaPredicted RBP16.05■□□□□ 0.16
CLK3-224ENST00000568605 TRPM4Q8TD43 1214 aa16.05■□□□□ 0.16
CLK3-224ENST00000568605 TBC1D22AQ8WUA7 517 aa16.05■□□□□ 0.16
CLK3-224ENST00000568605 GMLQ99445 158 aa16.05■□□□□ 0.16
CLK3-224ENST00000568605 ZBTB40Q9NUA8 1239 aa16.05■□□□□ 0.16
CLK3-224ENST00000568605 AK9Q5TCS8 1911 aa16.04■□□□□ 0.16
CLK3-224ENST00000568605 DOCK2Q92608 1830 aa16.04■□□□□ 0.16
CLK3-224ENST00000568605 SURF6O75683 361 aaKnown RBP16.04■□□□□ 0.16
CLK3-224ENST00000568605 HSP90AB4PQ58FF6 505 aa16.04■□□□□ 0.16
CLK3-224ENST00000568605 MFSD14BQ5SR56 506 aa16.04■□□□□ 0.16
CLK3-224ENST00000568605 MAP1SQ66K74 1059 aaPredicted RBP16.04■□□□□ 0.16
CLK3-224ENST00000568605 SAMD7Q7Z3H4 446 aa16.04■□□□□ 0.16
CLK3-224ENST00000568605 ERC1Q8IUD2 1116 aa16.04■□□□□ 0.16
CLK3-224ENST00000568605 KIAA0825Q8IV33 1275 aa16.04■□□□□ 0.16
CLK3-224ENST00000568605 MYOZ2Q9NPC6 264 aa16.04■□□□□ 0.16
CLK3-224ENST00000568605 A0A1B0GUL7 405 aa16.03■□□□□ 0.16
CLK3-224ENST00000568605 SHTN1A0MZ66 631 aa16.03■□□□□ 0.16
CLK3-224ENST00000568605 TFCP2Q12800 502 aa16.03■□□□□ 0.16
CLK3-224ENST00000568605 C20orf194Q5TEA3 1177 aa16.03■□□□□ 0.16
CLK3-224ENST00000568605 CNTROBQ8N137 903 aa16.03■□□□□ 0.16
CLK3-224ENST00000568605 MAST3O60307 1309 aa16.02■□□□□ 0.16
CLK3-224ENST00000568605 PASKQ96RG2 1323 aa16.02■□□□□ 0.16
CLK3-224ENST00000568605 SEMA3EO15041 775 aa16.02■□□□□ 0.16
CLK3-224ENST00000568605 BCAMP50895 628 aa16.02■□□□□ 0.16
CLK3-224ENST00000568605 CHAF1AQ13111 956 aaPredicted RBP16.02■□□□□ 0.16
CLK3-224ENST00000568605 RBM26Q5T8P6 1007 aaKnown RBP16.02■□□□□ 0.16
CLK3-224ENST00000568605 DCPSQ96C86 337 aaKnown RBP16.02■□□□□ 0.16
CLK3-224ENST00000568605 MXD3Q9BW11 206 aa16.02■□□□□ 0.16
CLK3-224ENST00000568605 IQSEC3Q9UPP2 1182 aaPredicted RBP16.02■□□□□ 0.16
CLK3-224ENST00000568605 NOP58Q9Y2X3 529 aaKnown RBP16.02■□□□□ 0.16
CLK3-224ENST00000568605 PITPNM2Q9BZ72 1349 aa16.01■□□□□ 0.15
CLK3-224ENST00000568605 GORABQ5T7V8 394 aa16.01■□□□□ 0.15
CLK3-224ENST00000568605 NEUROD6Q96NK8 337 aa16.01■□□□□ 0.15
CLK3-224ENST00000568605 GPR108Q9NPR9 543 aa16.01■□□□□ 0.15
CLK3-224ENST00000568605 PGAP2Q9UHJ9 254 aa16.01■□□□□ 0.15
CLK3-224ENST00000568605 JAG2Q9Y219 1238 aa16.01■□□□□ 0.15
CLK3-224ENST00000568605 COL1A1P02452 1464 aaPredicted RBP16.01■□□□□ 0.15
CLK3-224ENST00000568605 PAPPA2Q9BXP8 1791 aa16■□□□□ 0.15
CLK3-224ENST00000568605 CDK5RAP2Q96SN8 1893 aa16■□□□□ 0.15
CLK3-224ENST00000568605 HIRAP54198 1017 aaPredicted RBP16■□□□□ 0.15
CLK3-224ENST00000568605 CDC37L1Q7L3B6 337 aa16■□□□□ 0.15
CLK3-224ENST00000568605 CERS5Q8N5B7 392 aa16■□□□□ 0.15
CLK3-224ENST00000568605 WDR66Q8TBY9 1149 aa16■□□□□ 0.15
CLK3-224ENST00000568605 XAGE2Q96GT9 111 aa16■□□□□ 0.15
CLK3-224ENST00000568605 GGA3Q9NZ52 723 aa16■□□□□ 0.15
CLK3-224ENST00000568605 DENND2AQ9ULE3 1009 aa16■□□□□ 0.15
CLK3-224ENST00000568605 SUGT1Q9Y2Z0 365 aa16■□□□□ 0.15
CLK3-224ENST00000568605 PDS5AQ29RF7 1337 aaKnown RBP15.99■□□□□ 0.15
CLK3-224ENST00000568605 FOCADQ5VW36 1801 aa15.99■□□□□ 0.15
CLK3-224ENST00000568605 F8W031 263 aaPredicted RBP15.99■□□□□ 0.15
CLK3-224ENST00000568605 ZBTB22O15209 634 aa15.99■□□□□ 0.15
CLK3-224ENST00000568605 MYO1BO43795 1136 aa15.99■□□□□ 0.15
CLK3-224ENST00000568605 ITGBL1O95965 494 aaPredicted RBP15.99■□□□□ 0.15
CLK3-224ENST00000568605 EGFRP00533 1210 aa15.99■□□□□ 0.15
CLK3-224ENST00000568605 CCDC102BQ68D86 513 aa15.99■□□□□ 0.15
CLK3-224ENST00000568605 SULF1Q8IWU6 871 aa15.99■□□□□ 0.15
CLK3-224ENST00000568605 ZGPATQ8N5A5 531 aaKnown RBP15.99■□□□□ 0.15
CLK3-224ENST00000568605 TTF2Q9UNY4 1162 aaKnown RBP15.99■□□□□ 0.15
CLK3-224ENST00000568605 PHKA1P46020 1223 aa15.98■□□□□ 0.15
CLK3-224ENST00000568605 TIMM10P62072 90 aa15.98■□□□□ 0.15
CLK3-224ENST00000568605 SCARF1Q14162 830 aa15.98■□□□□ 0.15
CLK3-224ENST00000568605 DLGAP5Q15398 846 aa15.98■□□□□ 0.15
CLK3-224ENST00000568605 TNNI3KQ59H18 835 aa15.98■□□□□ 0.15
CLK3-224ENST00000568605 KRT26Q7Z3Y9 468 aa15.98■□□□□ 0.15
CLK3-224ENST00000568605 APOBEC3FQ8IUX4 373 aaKnown RBP15.98■□□□□ 0.15
CLK3-224ENST00000568605 MTMR14Q8NCE2 650 aa15.98■□□□□ 0.15
CLK3-224ENST00000568605 CREBZFQ9NS37 354 aa15.98■□□□□ 0.15
CLK3-224ENST00000568605 EXOC6BQ9Y2D4 811 aa15.98■□□□□ 0.15
CLK3-224ENST00000568605 FPGT-TNNI3KV9GXZ4 949 aa15.98■□□□□ 0.15
CLK3-224ENST00000568605 TMEM88BA6NKF7 163 aa15.97■□□□□ 0.15
CLK3-224ENST00000568605 WNT10BO00744 389 aa15.97■□□□□ 0.15
CLK3-224ENST00000568605 UQCRFS1P1P0C7P4 283 aa15.97■□□□□ 0.15
CLK3-224ENST00000568605 ADORA1P30542 326 aa15.97■□□□□ 0.15
CLK3-224ENST00000568605 RBM5P52756 815 aaKnown RBP eCLIP15.97■□□□□ 0.15
CLK3-224ENST00000568605 ANGEL2Q5VTE6 544 aaKnown RBP15.97■□□□□ 0.15
CLK3-224ENST00000568605 GLIS2Q9BZE0 524 aaPredicted RBP15.97■□□□□ 0.15
CLK3-224ENST00000568605 SERPINA10Q9UK55 444 aa15.97■□□□□ 0.15
CLK3-224ENST00000568605 THSD7BQ9C0I4 1608 aa15.97■□□□□ 0.15
CLK3-224ENST00000568605 SALL1Q9NSC2 1324 aa15.96■□□□□ 0.15
CLK3-224ENST00000568605 CFAP100Q494V2 611 aa15.96■□□□□ 0.15
CLK3-224ENST00000568605 CCDC158Q5M9N0 1113 aa15.96■□□□□ 0.15
CLK3-224ENST00000568605 KIF1BPQ96EK5 621 aa15.96■□□□□ 0.15
CLK3-224ENST00000568605 OTOFQ9HC10 1997 aa15.96■□□□□ 0.15
CLK3-224ENST00000568605 RAB11FIP3O75154 756 aa15.95■□□□□ 0.14
CLK3-224ENST00000568605 HDLBPQ00341 1268 aaKnown RBP15.95■□□□□ 0.14
CLK3-224ENST00000568605 AAMPQ13685 434 aa15.95■□□□□ 0.14
CLK3-224ENST00000568605 NBPF9Q3BBW0 867 aa15.95■□□□□ 0.14
CLK3-224ENST00000568605 TTC39AQ5SRH9 613 aa15.95■□□□□ 0.14
CLK3-224ENST00000568605 TEKT1Q969V4 418 aa15.95■□□□□ 0.14
CLK3-224ENST00000568605 LAMB1P07942 1786 aa15.95■□□□□ 0.14
CLK3-224ENST00000568605 SPDYE2BA6NHP3 402 aa15.94■□□□□ 0.14
CLK3-224ENST00000568605 LDHBP07195 334 aaKnown RBP15.94■□□□□ 0.14
CLK3-224ENST00000568605 SPDYE6P0CI01 402 aa15.94■□□□□ 0.14
CLK3-224ENST00000568605 ARID4AP29374 1257 aaPredicted RBP15.94■□□□□ 0.14
CLK3-224ENST00000568605 RASGRF1Q13972 1273 aa15.94■□□□□ 0.14
CLK3-224ENST00000568605 SPTY2D1Q68D10 685 aaPredicted RBP15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms