RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 TTC14Q96N46 770 aa8.43□□□□□ -1.06
SMG1-215ENST00000568239 DSCC1Q9BVC3 393 aa8.43□□□□□ -1.06
SMG1-215ENST00000568239 TM6SF1Q9BZW5 370 aa8.43□□□□□ -1.06
SMG1-215ENST00000568239 CIZ1Q9ULV3 898 aaPredicted RBP8.43□□□□□ -1.06
SMG1-215ENST00000568239 LIMCH1Q9UPQ0 1083 aa8.43□□□□□ -1.06
SMG1-215ENST00000568239 COL24A1Q17RW2 1714 aa8.42□□□□□ -1.06
SMG1-215ENST00000568239 A0A0G2JLW4 131 aa8.42□□□□□ -1.06
SMG1-215ENST00000568239 PDE6AP16499 860 aa8.42□□□□□ -1.06
SMG1-215ENST00000568239 DDIT3P35638 169 aa8.42□□□□□ -1.06
SMG1-215ENST00000568239 DDR1Q08345 913 aa8.42□□□□□ -1.06
SMG1-215ENST00000568239 KRT32Q14532 448 aa8.42□□□□□ -1.06
SMG1-215ENST00000568239 SLC51AQ86UW1 340 aa8.42□□□□□ -1.06
SMG1-215ENST00000568239 KCNB2Q92953 911 aa8.42□□□□□ -1.06
SMG1-215ENST00000568239 TNPO1Q92973 898 aaKnown RBP8.42□□□□□ -1.06
SMG1-215ENST00000568239 AIDAQ96BJ3 306 aa8.42□□□□□ -1.06
SMG1-215ENST00000568239 NEK1Q96PY6 1258 aa8.42□□□□□ -1.06
SMG1-215ENST00000568239 ANKRD2Q9GZV1 360 aa8.42□□□□□ -1.06
SMG1-215ENST00000568239 CWC22Q9HCG8 908 aaKnown RBP8.42□□□□□ -1.06
SMG1-215ENST00000568239 DTNBO60941 627 aa8.42□□□□□ -1.06
SMG1-215ENST00000568239 EN1Q05925 392 aaPredicted RBP8.42□□□□□ -1.06
SMG1-215ENST00000568239 GRAPQ13588 217 aa8.42□□□□□ -1.06
SMG1-215ENST00000568239 PKP1Q13835 747 aa8.42□□□□□ -1.06
SMG1-215ENST00000568239 TICAM2Q86XR7 235 aa8.42□□□□□ -1.06
SMG1-215ENST00000568239 GRAPLQ8TC17 118 aaPredicted RBP8.42□□□□□ -1.06
SMG1-215ENST00000568239 RAI14Q9P0K7 980 aa8.42□□□□□ -1.06
SMG1-215ENST00000568239 NSFL1CQ9UNZ2 370 aaKnown RBP8.42□□□□□ -1.06
SMG1-215ENST00000568239 JAG2Q9Y219 1238 aa8.42□□□□□ -1.06
SMG1-215ENST00000568239 MYH7P12883 1935 aa8.42□□□□□ -1.06
SMG1-215ENST00000568239 ZNF804BA4D1E1 1349 aa8.41□□□□□ -1.06
SMG1-215ENST00000568239 FAM84BQ96KN1 310 aaPredicted RBP8.41□□□□□ -1.06
SMG1-215ENST00000568239 LRRC2Q9BYS8 371 aa8.41□□□□□ -1.06
SMG1-215ENST00000568239 PODXL2Q9NZ53 605 aa8.41□□□□□ -1.06
SMG1-215ENST00000568239 POLRMTO00411 1230 aaKnown RBP8.41□□□□□ -1.06
SMG1-215ENST00000568239 RPS6KB1P23443 525 aa8.41□□□□□ -1.06
SMG1-215ENST00000568239 CHAF1AQ13111 956 aaPredicted RBP8.41□□□□□ -1.06
SMG1-215ENST00000568239 RAB3GAP1Q15042 981 aa8.41□□□□□ -1.06
SMG1-215ENST00000568239 UBE3CQ15386 1083 aa8.41□□□□□ -1.06
SMG1-215ENST00000568239 CCDC83Q8IWF9 413 aa8.41□□□□□ -1.06
SMG1-215ENST00000568239 NLGN1Q8N2Q7 840 aa8.41□□□□□ -1.06
SMG1-215ENST00000568239 AKT1S1Q96B36 256 aa8.41□□□□□ -1.06
SMG1-215ENST00000568239 TNRC6CQ9HCJ0 1690 aaKnown RBP8.41□□□□□ -1.06
SMG1-215ENST00000568239 LARGE1O95461 756 aa8.4□□□□□ -1.06
SMG1-215ENST00000568239 FGAP02671 866 aa8.4□□□□□ -1.06
SMG1-215ENST00000568239 HIBADHP31937 336 aaKnown RBP8.4□□□□□ -1.06
SMG1-215ENST00000568239 NUCB2P80303 420 aa8.4□□□□□ -1.06
SMG1-215ENST00000568239 STK3Q13188 491 aa8.4□□□□□ -1.06
SMG1-215ENST00000568239 EZH2Q15910 746 aaKnown RBP8.4□□□□□ -1.06
SMG1-215ENST00000568239 IMMTQ16891 758 aaKnown RBP8.4□□□□□ -1.06
SMG1-215ENST00000568239 MIGA1Q8NAN2 632 aa8.4□□□□□ -1.06
SMG1-215ENST00000568239 RBM17Q96I25 401 aaKnown RBP8.4□□□□□ -1.06
SMG1-215ENST00000568239 CTNNA3Q9UI47 895 aa8.4□□□□□ -1.06
SMG1-215ENST00000568239 NAP1L2Q9ULW6 460 aaPredicted RBP8.4□□□□□ -1.06
SMG1-215ENST00000568239 RPAP1Q9BWH6 1393 aaPredicted RBP8.4□□□□□ -1.06
SMG1-215ENST00000568239 MBD4O95243 580 aa8.4□□□□□ -1.06
SMG1-215ENST00000568239 MMP10P09238 476 aa8.4□□□□□ -1.06
SMG1-215ENST00000568239 CUL4AQ13619 759 aa8.4□□□□□ -1.06
SMG1-215ENST00000568239 STOX1Q6ZVD7 989 aa8.4□□□□□ -1.06
SMG1-215ENST00000568239 CHST3Q7LGC8 479 aa8.4□□□□□ -1.06
SMG1-215ENST00000568239 TXNRD3Q86VQ6 643 aa8.4□□□□□ -1.06
SMG1-215ENST00000568239 NECAB1Q8N987 351 aa8.4□□□□□ -1.06
SMG1-215ENST00000568239 GPR101Q96P66 508 aaPredicted RBP8.4□□□□□ -1.06
SMG1-215ENST00000568239 GBP4Q96PP9 640 aa8.4□□□□□ -1.06
SMG1-215ENST00000568239 MCM4P33991 863 aa8.4□□□□□ -1.07
SMG1-215ENST00000568239 TSGA10IPQ3SY00 556 aa8.4□□□□□ -1.07
SMG1-215ENST00000568239 Q6ZUG5 572 aa8.4□□□□□ -1.07
SMG1-215ENST00000568239 FBXO41Q8TF61 875 aa8.4□□□□□ -1.07
SMG1-215ENST00000568239 ARMT1Q9H993 441 aa8.4□□□□□ -1.07
SMG1-215ENST00000568239 DENND2AQ9ULE3 1009 aa8.4□□□□□ -1.07
SMG1-215ENST00000568239 TPCN1Q9ULQ1 816 aa8.4□□□□□ -1.07
SMG1-215ENST00000568239 ARAP2Q8WZ64 1704 aa8.39□□□□□ -1.07
SMG1-215ENST00000568239 E7EWF7 191 aa8.39□□□□□ -1.07
SMG1-215ENST00000568239 ZNF213O14771 459 aa8.39□□□□□ -1.07
SMG1-215ENST00000568239 CYP7A1P22680 504 aa8.39□□□□□ -1.07
SMG1-215ENST00000568239 ANKRD1Q15327 319 aa8.39□□□□□ -1.07
SMG1-215ENST00000568239 ME3Q16798 604 aa8.39□□□□□ -1.07
SMG1-215ENST00000568239 IL27Q8NEV9 243 aa8.39□□□□□ -1.07
SMG1-215ENST00000568239 FLAD1Q8NFF5 587 aa8.39□□□□□ -1.07
SMG1-215ENST00000568239 INTS4Q96HW7 963 aaKnown RBP8.39□□□□□ -1.07
SMG1-215ENST00000568239 SMC3Q9UQE7 1217 aa8.39□□□□□ -1.07
SMG1-215ENST00000568239 PARP3Q9Y6F1 533 aa8.39□□□□□ -1.07
SMG1-215ENST00000568239 TCRBV5S4A2TA0A5A2 114 aa8.39□□□□□ -1.07
SMG1-215ENST00000568239 SF3B2Q13435 895 aaKnown RBP8.39□□□□□ -1.07
SMG1-215ENST00000568239 ZSCAN31Q96LW9 406 aaPredicted RBP8.39□□□□□ -1.07
SMG1-215ENST00000568239 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.39□□□□□ -1.07
SMG1-215ENST00000568239 XDHP47989 1333 aa8.38□□□□□ -1.07
SMG1-215ENST00000568239 FOXP2O15409 715 aa8.38□□□□□ -1.07
SMG1-215ENST00000568239 FOXD4L6Q3SYB3 417 aaPredicted RBP8.38□□□□□ -1.07
SMG1-215ENST00000568239 CRY2Q49AN0 593 aa8.38□□□□□ -1.07
SMG1-215ENST00000568239 FOXD4L3Q6VB84 417 aaPredicted RBP8.38□□□□□ -1.07
SMG1-215ENST00000568239 FBXO33Q7Z6M2 555 aa8.38□□□□□ -1.07
SMG1-215ENST00000568239 STK11IPQ8N1F8 1099 aa8.38□□□□□ -1.07
SMG1-215ENST00000568239 BRF1Q92994 677 aa8.38□□□□□ -1.07
SMG1-215ENST00000568239 STRBPQ96SI9 672 aaKnown RBP8.38□□□□□ -1.07
SMG1-215ENST00000568239 SH2B1Q9NRF2 756 aaPredicted RBP8.38□□□□□ -1.07
SMG1-215ENST00000568239 PNPLA7Q6ZV29 1317 aa8.38□□□□□ -1.07
SMG1-215ENST00000568239 UFL1O94874 794 aa8.38□□□□□ -1.07
SMG1-215ENST00000568239 HMGB1P09429 215 aaKnown RBP8.38□□□□□ -1.07
SMG1-215ENST00000568239 GPSM2P81274 684 aa8.38□□□□□ -1.07
SMG1-215ENST00000568239 TOB2Q14106 344 aaPredicted RBP8.38□□□□□ -1.07
SMG1-215ENST00000568239 DHX32Q7L7V1 743 aaKnown RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms