RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 TRMT112Q9UI30 125 aaKnown RBP15.59■□□□□ 0.09
VPS4A-204ENST00000566354 MRVI1Q9Y6F6 885 aa15.59■□□□□ 0.09
VPS4A-204ENST00000566354 SCN7AQ01118 1682 aa15.59■□□□□ 0.09
VPS4A-204ENST00000566354 TOB2Q14106 344 aaPredicted RBP15.59■□□□□ 0.09
VPS4A-204ENST00000566354 KRT32Q14532 448 aa15.59■□□□□ 0.09
VPS4A-204ENST00000566354 UTP14CQ5TAP6 766 aaKnown RBP15.59■□□□□ 0.09
VPS4A-204ENST00000566354 CCDC94Q9BW85 323 aaPredicted RBP15.59■□□□□ 0.09
VPS4A-204ENST00000566354 TLR7Q9NYK1 1049 aaKnown RBP15.59■□□□□ 0.09
VPS4A-204ENST00000566354 C4AP0C0L4 1744 aa15.58■□□□□ 0.09
VPS4A-204ENST00000566354 SPC24Q8NBT2 197 aa15.58■□□□□ 0.08
VPS4A-204ENST00000566354 ZNF652Q9Y2D9 606 aa15.58■□□□□ 0.08
VPS4A-204ENST00000566354 CHMP3Q9Y3E7 222 aa15.58■□□□□ 0.08
VPS4A-204ENST00000566354 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.57■□□□□ 0.08
VPS4A-204ENST00000566354 CHAF1AQ13111 956 aaPredicted RBP15.57■□□□□ 0.08
VPS4A-204ENST00000566354 CAMK4Q16566 473 aa15.57■□□□□ 0.08
VPS4A-204ENST00000566354 TRAPPC3LQ5T215 181 aa15.57■□□□□ 0.08
VPS4A-204ENST00000566354 FAM173BQ6P4H8 233 aa15.57■□□□□ 0.08
VPS4A-204ENST00000566354 CLEC4GQ6UXB4 293 aa15.57■□□□□ 0.08
VPS4A-204ENST00000566354 RBM43Q6ZSC3 357 aaKnown RBP15.57■□□□□ 0.08
VPS4A-204ENST00000566354 DACT1Q9NYF0 836 aa15.57■□□□□ 0.08
VPS4A-204ENST00000566354 ZPR1O75312 459 aa15.57■□□□□ 0.08
VPS4A-204ENST00000566354 TAF5LO75529 589 aa15.57■□□□□ 0.08
VPS4A-204ENST00000566354 COL9A3Q14050 684 aaPredicted RBP15.57■□□□□ 0.08
VPS4A-204ENST00000566354 BICDL1Q6ZP65 573 aa15.57■□□□□ 0.08
VPS4A-204ENST00000566354 LEO1Q8WVC0 666 aaPredicted RBP15.57■□□□□ 0.08
VPS4A-204ENST00000566354 TCEANC2Q96MN5 208 aa15.57■□□□□ 0.08
VPS4A-204ENST00000566354 SIL1Q9H173 461 aa15.57■□□□□ 0.08
VPS4A-204ENST00000566354 PYCARDQ9ULZ3 195 aa15.57■□□□□ 0.08
VPS4A-204ENST00000566354 RFC4P35249 363 aa15.56■□□□□ 0.08
VPS4A-204ENST00000566354 RFX5P48382 616 aaPredicted RBP15.56■□□□□ 0.08
VPS4A-204ENST00000566354 TBC1D9BQ66K14 1250 aa15.56■□□□□ 0.08
VPS4A-204ENST00000566354 CCDC85AQ96PX6 553 aaPredicted RBP15.56■□□□□ 0.08
VPS4A-204ENST00000566354 IRS4O14654 1257 aaPredicted RBP15.56■□□□□ 0.08
VPS4A-204ENST00000566354 ZNF589Q86UQ0 364 aaPredicted RBP15.56■□□□□ 0.08
VPS4A-204ENST00000566354 LUZP1Q86V48 1076 aa15.56■□□□□ 0.08
VPS4A-204ENST00000566354 CLSTN2Q9H4D0 955 aa15.56■□□□□ 0.08
VPS4A-204ENST00000566354 TFIP11Q9UBB9 837 aaKnown RBP15.56■□□□□ 0.08
VPS4A-204ENST00000566354 CDHR2Q9BYE9 1310 aa15.56■□□□□ 0.08
VPS4A-204ENST00000566354 PTPN12Q05209 780 aaKnown RBP15.55■□□□□ 0.08
VPS4A-204ENST00000566354 PARP10Q53GL7 1025 aa15.55■□□□□ 0.08
VPS4A-204ENST00000566354 ZNF710Q8N1W2 664 aa15.55■□□□□ 0.08
VPS4A-204ENST00000566354 UTP14AQ9BVJ6 771 aaKnown RBP15.55■□□□□ 0.08
VPS4A-204ENST00000566354 TAF6LQ9Y6J9 622 aa15.55■□□□□ 0.08
VPS4A-204ENST00000566354 NTSR2O95665 410 aa15.55■□□□□ 0.08
VPS4A-204ENST00000566354 ATP5JP18859 108 aa15.55■□□□□ 0.08
VPS4A-204ENST00000566354 ZNF827Q17R98 1081 aa15.55■□□□□ 0.08
VPS4A-204ENST00000566354 ANO6Q4KMQ2 910 aa15.55■□□□□ 0.08
VPS4A-204ENST00000566354 CKAP2LQ8IYA6 745 aa15.55■□□□□ 0.08
VPS4A-204ENST00000566354 PLA2G12BQ9BX93 195 aa15.55■□□□□ 0.08
VPS4A-204ENST00000566354 CBX8Q9HC52 389 aa15.55■□□□□ 0.08
VPS4A-204ENST00000566354 CAVIN2O95810 425 aa15.54■□□□□ 0.08
VPS4A-204ENST00000566354 STK3Q13188 491 aa15.54■□□□□ 0.08
VPS4A-204ENST00000566354 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.54■□□□□ 0.08
VPS4A-204ENST00000566354 GTF3C6Q969F1 213 aa15.54■□□□□ 0.08
VPS4A-204ENST00000566354 NEK1Q96PY6 1258 aa15.54■□□□□ 0.08
VPS4A-204ENST00000566354 COPRSQ9NQ92 184 aa15.54■□□□□ 0.08
VPS4A-204ENST00000566354 SH3TC1Q8TE82 1336 aa15.54■□□□□ 0.08
VPS4A-204ENST00000566354 MYH3P11055 1940 aa15.54■□□□□ 0.08
VPS4A-204ENST00000566354 HSP90B1P14625 803 aaKnown RBP15.54■□□□□ 0.08
VPS4A-204ENST00000566354 TSC1Q92574 1164 aa15.54■□□□□ 0.08
VPS4A-204ENST00000566354 PTGS1P23219 599 aa15.53■□□□□ 0.08
VPS4A-204ENST00000566354 EN1Q05925 392 aaPredicted RBP15.53■□□□□ 0.08
VPS4A-204ENST00000566354 TDRD7Q8NHU6 1098 aaKnown RBP15.53■□□□□ 0.08
VPS4A-204ENST00000566354 ZSCAN16Q9H4T2 348 aaPredicted RBP15.53■□□□□ 0.08
VPS4A-204ENST00000566354 RFX7Q2KHR2 1363 aa15.53■□□□□ 0.08
VPS4A-204ENST00000566354 CSF1RP07333 972 aa15.52■□□□□ 0.08
VPS4A-204ENST00000566354 CNKSR2Q8WXI2 1034 aa15.52■□□□□ 0.08
VPS4A-204ENST00000566354 ZNF594Q96JF6 807 aaPredicted RBP15.52■□□□□ 0.08
VPS4A-204ENST00000566354 CFAP45Q9UL16 551 aa15.52■□□□□ 0.08
VPS4A-204ENST00000566354 U3KPZ7 1027 aaPredicted RBP15.52■□□□□ 0.08
VPS4A-204ENST00000566354 RGL2O15211 777 aa15.52■□□□□ 0.07
VPS4A-204ENST00000566354 EZH2Q15910 746 aaKnown RBP15.52■□□□□ 0.07
VPS4A-204ENST00000566354 PLA2G4DQ86XP0 818 aa15.52■□□□□ 0.07
VPS4A-204ENST00000566354 TTLL11Q8NHH1 800 aa15.52■□□□□ 0.07
VPS4A-204ENST00000566354 BICD2Q8TD16 824 aa15.52■□□□□ 0.07
VPS4A-204ENST00000566354 PDE8AO60658 829 aa15.51■□□□□ 0.07
VPS4A-204ENST00000566354 NR1I2O75469 434 aa15.51■□□□□ 0.07
VPS4A-204ENST00000566354 ZNF165P49910 485 aa15.51■□□□□ 0.07
VPS4A-204ENST00000566354 ZNF75DP51815 510 aa15.51■□□□□ 0.07
VPS4A-204ENST00000566354 CTSWP56202 376 aa15.51■□□□□ 0.07
VPS4A-204ENST00000566354 RESTQ13127 1097 aa15.51■□□□□ 0.07
VPS4A-204ENST00000566354 CCDC186Q7Z3E2 898 aa15.51■□□□□ 0.07
VPS4A-204ENST00000566354 AKT1S1Q96B36 256 aa15.51■□□□□ 0.07
VPS4A-204ENST00000566354 PGBD1Q96JS3 809 aa15.51■□□□□ 0.07
VPS4A-204ENST00000566354 TRIM5Q9C035 493 aa15.51■□□□□ 0.07
VPS4A-204ENST00000566354 TFCP2L1Q9NZI6 479 aa15.51■□□□□ 0.07
VPS4A-204ENST00000566354 DDX60Q8IY21 1712 aaKnown RBP15.51■□□□□ 0.07
VPS4A-204ENST00000566354 H3BQV1 296 aa15.51■□□□□ 0.07
VPS4A-204ENST00000566354 RIOK3O14730 519 aaKnown RBP15.51■□□□□ 0.07
VPS4A-204ENST00000566354 TMEM132AQ24JP5 1023 aa15.51■□□□□ 0.07
VPS4A-204ENST00000566354 TNNI3KQ59H18 835 aa15.51■□□□□ 0.07
VPS4A-204ENST00000566354 IFFO2Q5TF58 517 aa15.51■□□□□ 0.07
VPS4A-204ENST00000566354 DRC7Q8IY82 874 aa15.51■□□□□ 0.07
VPS4A-204ENST00000566354 BRF1Q92994 677 aa15.51■□□□□ 0.07
VPS4A-204ENST00000566354 SETDB2Q96T68 719 aa15.51■□□□□ 0.07
VPS4A-204ENST00000566354 ARID3AQ99856 593 aa15.51■□□□□ 0.07
VPS4A-204ENST00000566354 GREM2Q9H772 168 aa15.51■□□□□ 0.07
VPS4A-204ENST00000566354 DBNLQ9UJU6 430 aaKnown RBP15.51■□□□□ 0.07
VPS4A-204ENST00000566354 FPGT-TNNI3KV9GXZ4 949 aa15.51■□□□□ 0.07
VPS4A-204ENST00000566354 RGPD3A6NKT7 1758 aaPredicted RBP15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms