RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 LDHAL6AQ6ZMR3 332 aa16.46■□□□□ 0.23
SF3B3-202ENST00000562722 CERS5Q8N5B7 392 aa16.46■□□□□ 0.23
SF3B3-202ENST00000562722 ZNF296Q8WUU4 475 aaPredicted RBP16.46■□□□□ 0.23
SF3B3-202ENST00000562722 ZNF594Q96JF6 807 aaPredicted RBP16.46■□□□□ 0.23
SF3B3-202ENST00000562722 DEFB129Q9H1M3 183 aa16.46■□□□□ 0.23
SF3B3-202ENST00000562722 CLRN2A0PK11 232 aa16.45■□□□□ 0.22
SF3B3-202ENST00000562722 TM4SF4P48230 202 aa16.45■□□□□ 0.22
SF3B3-202ENST00000562722 CFAP100Q494V2 611 aa16.45■□□□□ 0.22
SF3B3-202ENST00000562722 C15orf52Q6ZUT6 534 aaKnown RBP16.45■□□□□ 0.22
SF3B3-202ENST00000562722 ZBED3Q96IU2 234 aaPredicted RBP16.45■□□□□ 0.22
SF3B3-202ENST00000562722 VEZTQ9HBM0 779 aa16.45■□□□□ 0.22
SF3B3-202ENST00000562722 FZD1Q9UP38 647 aa16.45■□□□□ 0.22
SF3B3-202ENST00000562722 COL1A1P02452 1464 aaPredicted RBP16.45■□□□□ 0.22
SF3B3-202ENST00000562722 IL1R1P14778 569 aa16.44■□□□□ 0.22
SF3B3-202ENST00000562722 EPHA10Q5JZY3 1008 aa16.44■□□□□ 0.22
SF3B3-202ENST00000562722 FAM9BQ8IZU0 186 aa16.44■□□□□ 0.22
SF3B3-202ENST00000562722 SLC10A4Q96EP9 437 aa16.44■□□□□ 0.22
SF3B3-202ENST00000562722 SPINK5Q9NQ38 1064 aaPredicted RBP16.44■□□□□ 0.22
SF3B3-202ENST00000562722 HPS5Q9UPZ3 1129 aa16.44■□□□□ 0.22
SF3B3-202ENST00000562722 PCDHAC2Q9Y5I4 1007 aa16.44■□□□□ 0.22
SF3B3-202ENST00000562722 IRS2Q9Y4H2 1338 aa16.44■□□□□ 0.22
SF3B3-202ENST00000562722 GPR25O00155 361 aa16.43■□□□□ 0.22
SF3B3-202ENST00000562722 PPP1R12BO60237 982 aaPredicted RBP16.43■□□□□ 0.22
SF3B3-202ENST00000562722 PKN2Q16513 984 aaKnown RBP16.43■□□□□ 0.22
SF3B3-202ENST00000562722 SPRYD7Q5W111 196 aa16.43■□□□□ 0.22
SF3B3-202ENST00000562722 MTMR14Q8NCE2 650 aa16.43■□□□□ 0.22
SF3B3-202ENST00000562722 SRCIN1Q9C0H9 1055 aa16.43■□□□□ 0.22
SF3B3-202ENST00000562722 PPP2R3BQ9Y5P8 575 aa16.43■□□□□ 0.22
SF3B3-202ENST00000562722 SPDYE2BA6NHP3 402 aa16.42■□□□□ 0.22
SF3B3-202ENST00000562722 SPDYE6P0CI01 402 aa16.42■□□□□ 0.22
SF3B3-202ENST00000562722 SUPT20HL1Q3ZLR7 823 aa16.42■□□□□ 0.22
SF3B3-202ENST00000562722 LDLRAD1Q5T700 205 aa16.42■□□□□ 0.22
SF3B3-202ENST00000562722 CACNA1FO60840 1977 aa16.42■□□□□ 0.22
SF3B3-202ENST00000562722 FKTNO75072 461 aa16.41■□□□□ 0.22
SF3B3-202ENST00000562722 ALDH1L1O75891 902 aa16.41■□□□□ 0.22
SF3B3-202ENST00000562722 FKBP1AP62942 108 aaKnown RBP16.41■□□□□ 0.22
SF3B3-202ENST00000562722 PRMT6Q96LA8 375 aaPredicted RBP16.41■□□□□ 0.22
SF3B3-202ENST00000562722 MANSC4A6NHS7 340 aaPredicted RBP16.4■□□□□ 0.22
SF3B3-202ENST00000562722 ALDH1A1P00352 501 aa16.4■□□□□ 0.22
SF3B3-202ENST00000562722 CLMNQ96JQ2 1002 aa16.4■□□□□ 0.22
SF3B3-202ENST00000562722 A0A1B0GUL6 1792 aa16.39■□□□□ 0.21
SF3B3-202ENST00000562722 ZNF316A6NFI3 1004 aaPredicted RBP16.39■□□□□ 0.21
SF3B3-202ENST00000562722 GYG1P46976 350 aa16.39■□□□□ 0.21
SF3B3-202ENST00000562722 IREB2P48200 963 aaKnown RBP16.39■□□□□ 0.21
SF3B3-202ENST00000562722 NOM1Q5C9Z4 860 aaKnown RBP16.39■□□□□ 0.21
SF3B3-202ENST00000562722 MFSD14BQ5SR56 506 aa16.39■□□□□ 0.21
SF3B3-202ENST00000562722 NBPF12Q5TAG4 269 aaPredicted RBP16.39■□□□□ 0.21
SF3B3-202ENST00000562722 SUCLG2Q96I99 432 aa16.39■□□□□ 0.21
SF3B3-202ENST00000562722 TTF2Q9UNY4 1162 aaKnown RBP16.39■□□□□ 0.21
SF3B3-202ENST00000562722 SSC5DA1L4H1 1573 aa16.38■□□□□ 0.21
SF3B3-202ENST00000562722 SLC34A2O95436 690 aa16.38■□□□□ 0.21
SF3B3-202ENST00000562722 ZBTB48P10074 688 aaPredicted RBP16.38■□□□□ 0.21
SF3B3-202ENST00000562722 HIBADHP31937 336 aaKnown RBP16.38■□□□□ 0.21
SF3B3-202ENST00000562722 ZEB1P37275 1124 aaPredicted RBP16.38■□□□□ 0.21
SF3B3-202ENST00000562722 INHBEP58166 350 aa16.38■□□□□ 0.21
SF3B3-202ENST00000562722 TNFAIP1Q13829 316 aa16.38■□□□□ 0.21
SF3B3-202ENST00000562722 UBE4AQ14139 1066 aa16.38■□□□□ 0.21
SF3B3-202ENST00000562722 RASA3Q14644 834 aa16.38■□□□□ 0.21
SF3B3-202ENST00000562722 MAP3K11Q16584 847 aa16.38■□□□□ 0.21
SF3B3-202ENST00000562722 FBXO46Q6PJ61 603 aaPredicted RBP16.38■□□□□ 0.21
SF3B3-202ENST00000562722 VPS37DQ86XT2 251 aa16.38■□□□□ 0.21
SF3B3-202ENST00000562722 WNK4Q96J92 1243 aa16.38■□□□□ 0.21
SF3B3-202ENST00000562722 R3HDMLQ9H3Y0 253 aa16.38■□□□□ 0.21
SF3B3-202ENST00000562722 FAM205AQ6ZU69 1335 aa16.38■□□□□ 0.21
SF3B3-202ENST00000562722 IFNL1Q8IU54 200 aa16.37■□□□□ 0.21
SF3B3-202ENST00000562722 TDRD7Q8NHU6 1098 aaKnown RBP16.37■□□□□ 0.21
SF3B3-202ENST00000562722 CFHR5Q9BXR6 569 aa16.37■□□□□ 0.21
SF3B3-202ENST00000562722 PUS3Q9BZE2 481 aaKnown RBP16.37■□□□□ 0.21
SF3B3-202ENST00000562722 AOX1Q06278 1338 aa16.37■□□□□ 0.21
SF3B3-202ENST00000562722 FRAT2O75474 233 aaPredicted RBP16.36■□□□□ 0.21
SF3B3-202ENST00000562722 NBPF7P0C2Y1 421 aaPredicted RBP16.36■□□□□ 0.21
SF3B3-202ENST00000562722 CHAF1AQ13111 956 aaPredicted RBP16.36■□□□□ 0.21
SF3B3-202ENST00000562722 FAM84BQ96KN1 310 aaPredicted RBP16.36■□□□□ 0.21
SF3B3-202ENST00000562722 TDRD3Q9H7E2 651 aaKnown RBP16.36■□□□□ 0.21
SF3B3-202ENST00000562722 ZNF70Q9UC06 446 aaPredicted RBP16.36■□□□□ 0.21
SF3B3-202ENST00000562722 SERPINA10Q9UK55 444 aa16.36■□□□□ 0.21
SF3B3-202ENST00000562722 MROH5Q6ZUA9 1318 aa16.36■□□□□ 0.21
SF3B3-202ENST00000562722 UNCXA6NJT0 531 aa16.35■□□□□ 0.21
SF3B3-202ENST00000562722 IGF2BP3O00425 579 aaKnown RBP eCLIP16.35■□□□□ 0.21
SF3B3-202ENST00000562722 SPDYE2Q495Y8 402 aa16.35■□□□□ 0.21
SF3B3-202ENST00000562722 METTL24Q5JXM2 366 aa16.35■□□□□ 0.21
SF3B3-202ENST00000562722 OTUD7BQ6GQQ9 843 aa16.35■□□□□ 0.21
SF3B3-202ENST00000562722 ANKRD13AQ8IZ07 590 aa16.35■□□□□ 0.21
SF3B3-202ENST00000562722 BICC1Q9H694 974 aaKnown RBP16.35■□□□□ 0.21
SF3B3-202ENST00000562722 IQSEC3Q9UPP2 1182 aaPredicted RBP16.35■□□□□ 0.21
SF3B3-202ENST00000562722 TRIM17Q9Y577 477 aa16.35■□□□□ 0.21
SF3B3-202ENST00000562722 ECM29Q5VYK3 1845 aa16.35■□□□□ 0.21
SF3B3-202ENST00000562722 TCP10L2B9ZVM9 353 aa16.34■□□□□ 0.21
SF3B3-202ENST00000562722 USP2O75604 605 aaPredicted RBP16.34■□□□□ 0.21
SF3B3-202ENST00000562722 CAVIN4Q5BKX8 364 aa16.34■□□□□ 0.21
SF3B3-202ENST00000562722 DZIP1LQ8IYY4 767 aaKnown RBP16.34■□□□□ 0.21
SF3B3-202ENST00000562722 KAZALD1Q96I82 304 aa16.34■□□□□ 0.21
SF3B3-202ENST00000562722 ELP3Q9H9T3 547 aa16.34■□□□□ 0.21
SF3B3-202ENST00000562722 CRKP46108 304 aa16.33■□□□□ 0.2
SF3B3-202ENST00000562722 TNNI2P48788 182 aa16.33■□□□□ 0.2
SF3B3-202ENST00000562722 RIPOR2Q9Y4F9 1068 aa16.33■□□□□ 0.2
SF3B3-202ENST00000562722 LRRC24Q50LG9 513 aa16.32■□□□□ 0.2
SF3B3-202ENST00000562722 MRPL50Q8N5N7 158 aaKnown RBP16.32■□□□□ 0.2
SF3B3-202ENST00000562722 OPTNQ96CV9 577 aa16.32■□□□□ 0.2
SF3B3-202ENST00000562722 TMEM39BQ9GZU3 492 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms