RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 PDS5AQ29RF7 1337 aaKnown RBP26.6■■□□□ 1.85
SNX1-206ENST00000559389 SCN4AP35499 1836 aa26.6■■□□□ 1.85
SNX1-206ENST00000559389 FRAT2O75474 233 aaPredicted RBP26.59■■□□□ 1.85
SNX1-206ENST00000559389 RPS12P25398 132 aaKnown RBP26.59■■□□□ 1.85
SNX1-206ENST00000559389 GMPSP49915 693 aaPredicted RBP26.59■■□□□ 1.85
SNX1-206ENST00000559389 SCNN1DP51172 638 aa26.59■■□□□ 1.85
SNX1-206ENST00000559389 ZNF526Q8TF50 670 aaPredicted RBP26.59■■□□□ 1.85
SNX1-206ENST00000559389 JAG2Q9Y219 1238 aa26.59■■□□□ 1.85
SNX1-206ENST00000559389 ZBTB12Q9Y330 459 aaPredicted RBP26.59■■□□□ 1.85
SNX1-206ENST00000559389 MYO3BQ8WXR4 1341 aa26.59■■□□□ 1.85
SNX1-206ENST00000559389 UQCRFS1P1P0C7P4 283 aa26.58■■□□□ 1.85
SNX1-206ENST00000559389 FKBP1AP62942 108 aaKnown RBP26.58■■□□□ 1.85
SNX1-206ENST00000559389 CCDC158Q5M9N0 1113 aa26.58■■□□□ 1.85
SNX1-206ENST00000559389 TTC39AQ5SRH9 613 aa26.58■■□□□ 1.85
SNX1-206ENST00000559389 ZNF512BQ96KM6 892 aaPredicted RBP26.58■■□□□ 1.85
SNX1-206ENST00000559389 DENND2AQ9ULE3 1009 aa26.58■■□□□ 1.85
SNX1-206ENST00000559389 CHAF1AQ13111 956 aaPredicted RBP26.57■■□□□ 1.84
SNX1-206ENST00000559389 ANKRD45Q5TZF3 282 aa26.57■■□□□ 1.84
SNX1-206ENST00000559389 ERICH6BQ5W0A0 696 aa26.57■■□□□ 1.84
SNX1-206ENST00000559389 CERS5Q8N5B7 392 aa26.57■■□□□ 1.84
SNX1-206ENST00000559389 AGBL3Q8NEM8 1001 aa26.57■■□□□ 1.84
SNX1-206ENST00000559389 GMLQ99445 158 aa26.57■■□□□ 1.84
SNX1-206ENST00000559389 MXD3Q9BW11 206 aa26.57■■□□□ 1.84
SNX1-206ENST00000559389 BCL11AQ9H165 835 aa26.57■■□□□ 1.84
SNX1-206ENST00000559389 AKAP11Q9UKA4 1901 aa26.57■■□□□ 1.84
SNX1-206ENST00000559389 SCARF1Q14162 830 aa26.56■■□□□ 1.84
SNX1-206ENST00000559389 MCAMP43121 646 aa26.55■■□□□ 1.84
SNX1-206ENST00000559389 MFSD14BQ5SR56 506 aa26.55■■□□□ 1.84
SNX1-206ENST00000559389 TBC1D22AQ8WUA7 517 aa26.55■■□□□ 1.84
SNX1-206ENST00000559389 DPF2Q92785 391 aa26.55■■□□□ 1.84
SNX1-206ENST00000559389 GPRC5DQ9NZD1 345 aa26.55■■□□□ 1.84
SNX1-206ENST00000559389 HMG20BQ9P0W2 317 aa26.55■■□□□ 1.84
SNX1-206ENST00000559389 NUCB1Q02818 461 aa26.54■■□□□ 1.84
SNX1-206ENST00000559389 ZNF784Q8NCA9 323 aaPredicted RBP26.54■■□□□ 1.84
SNX1-206ENST00000559389 WDR66Q8TBY9 1149 aa26.54■■□□□ 1.84
SNX1-206ENST00000559389 NMRK2Q9NPI5 230 aa26.54■■□□□ 1.84
SNX1-206ENST00000559389 ZBTB47Q9UFB7 747 aaPredicted RBP26.54■■□□□ 1.84
SNX1-206ENST00000559389 SALL1Q9NSC2 1324 aa26.54■■□□□ 1.84
SNX1-206ENST00000559389 POTECB2RU33 542 aa26.53■■□□□ 1.84
SNX1-206ENST00000559389 LMOD1P29536 600 aaPredicted RBP26.53■■□□□ 1.84
SNX1-206ENST00000559389 B4GALNT3Q6L9W6 998 aa26.53■■□□□ 1.84
SNX1-206ENST00000559389 PI16Q6UXB8 463 aa26.53■■□□□ 1.84
SNX1-206ENST00000559389 SPATA5Q8NB90 893 aa26.53■■□□□ 1.84
SNX1-206ENST00000559389 GPBP1L1Q9HC44 474 aaPredicted RBP26.53■■□□□ 1.84
SNX1-206ENST00000559389 IQCA1LA6NCM1 817 aa26.52■■□□□ 1.84
SNX1-206ENST00000559389 SALL3Q9BXA9 1300 aa26.52■■□□□ 1.84
SNX1-206ENST00000559389 LNPKQ9C0E8 428 aa26.52■■□□□ 1.84
SNX1-206ENST00000559389 HACL1Q9UJ83 578 aa26.52■■□□□ 1.84
SNX1-206ENST00000559389 MAST2Q6P0Q8 1798 aa26.51■■□□□ 1.83
SNX1-206ENST00000559389 CHD1LQ86WJ1 897 aa26.51■■□□□ 1.83
SNX1-206ENST00000559389 MICALL2Q8IY33 904 aa26.51■■□□□ 1.83
SNX1-206ENST00000559389 OTUD7AQ8TE49 926 aaPredicted RBP26.51■■□□□ 1.83
SNX1-206ENST00000559389 PPIL4Q8WUA2 492 aaKnown RBP eCLIP26.51■■□□□ 1.83
SNX1-206ENST00000559389 SHTN1A0MZ66 631 aa26.5■■□□□ 1.83
SNX1-206ENST00000559389 EPS15P42566 896 aa26.5■■□□□ 1.83
SNX1-206ENST00000559389 KIAA0825Q8IV33 1275 aa26.5■■□□□ 1.83
SNX1-206ENST00000559389 C16orf71Q8IYS4 520 aaPredicted RBP26.5■■□□□ 1.83
SNX1-206ENST00000559389 RRAGCQ9HB90 399 aa26.5■■□□□ 1.83
SNX1-206ENST00000559389 ECHDC1Q9NTX5 307 aa26.5■■□□□ 1.83
SNX1-206ENST00000559389 CNOT7Q9UIV1 285 aaKnown RBP26.5■■□□□ 1.83
SNX1-206ENST00000559389 ADAMTSL1Q8N6G6 1762 aa26.49■■□□□ 1.83
SNX1-206ENST00000559389 USP17L8P0C7I0 530 aa26.49■■□□□ 1.83
SNX1-206ENST00000559389 VEGFAP15692 232 aaPredicted RBP26.49■■□□□ 1.83
SNX1-206ENST00000559389 ATP5JP18859 108 aa26.49■■□□□ 1.83
SNX1-206ENST00000559389 ZNF280AP59817 542 aaPredicted RBP26.49■■□□□ 1.83
SNX1-206ENST00000559389 GRIK5Q16478 980 aa26.49■■□□□ 1.83
SNX1-206ENST00000559389 CENPQQ7L2Z9 268 aaPredicted RBP26.49■■□□□ 1.83
SNX1-206ENST00000559389 GPATCH3Q96I76 525 aa26.49■■□□□ 1.83
SNX1-206ENST00000559389 CCDC136Q96JN2 1154 aa26.49■■□□□ 1.83
SNX1-206ENST00000559389 SUGT1Q9Y2Z0 365 aa26.49■■□□□ 1.83
SNX1-206ENST00000559389 DOCK2Q92608 1830 aa26.49■■□□□ 1.83
SNX1-206ENST00000559389 EPHX2P34913 555 aa26.48■■□□□ 1.83
SNX1-206ENST00000559389 ZGPATQ8N5A5 531 aaKnown RBP26.48■■□□□ 1.83
SNX1-206ENST00000559389 TAF1DQ9H5J8 278 aaPredicted RBP26.48■■□□□ 1.83
SNX1-206ENST00000559389 SNRKQ9NRH2 765 aa26.48■■□□□ 1.83
SNX1-206ENST00000559389 TTC41PQ6P2S7 1318 aa26.47■■□□□ 1.83
SNX1-206ENST00000559389 MX1P20591 662 aa26.47■■□□□ 1.83
SNX1-206ENST00000559389 ZAP70P43403 619 aa26.47■■□□□ 1.83
SNX1-206ENST00000559389 H7C1D1 291 aa26.46■■□□□ 1.83
SNX1-206ENST00000559389 PRDX5P30044 214 aa26.46■■□□□ 1.83
SNX1-206ENST00000559389 ADARB2Q9NS39 739 aaKnown RBP26.46■■□□□ 1.83
SNX1-206ENST00000559389 F8W031 263 aaPredicted RBP26.45■■□□□ 1.82
SNX1-206ENST00000559389 MMP14P50281 582 aa26.45■■□□□ 1.82
SNX1-206ENST00000559389 TSHZ3Q63HK5 1081 aa26.45■■□□□ 1.82
SNX1-206ENST00000559389 OGFOD1Q8N543 542 aa26.45■■□□□ 1.82
SNX1-206ENST00000559389 PPP4R2Q9NY27 417 aa26.45■■□□□ 1.82
SNX1-206ENST00000559389 HDAC9Q9UKV0 1011 aa26.45■■□□□ 1.82
SNX1-206ENST00000559389 TTF2Q9UNY4 1162 aaKnown RBP26.45■■□□□ 1.82
SNX1-206ENST00000559389 MAST3O60307 1309 aa26.44■■□□□ 1.82
SNX1-206ENST00000559389 KIF3CO14782 793 aa26.44■■□□□ 1.82
SNX1-206ENST00000559389 CYP2E1P05181 493 aaPredicted RBP26.44■■□□□ 1.82
SNX1-206ENST00000559389 TRPM4Q8TD43 1214 aa26.44■■□□□ 1.82
SNX1-206ENST00000559389 HAUS7Q99871 368 aa26.44■■□□□ 1.82
SNX1-206ENST00000559389 ABCF2Q9UG63 623 aa26.44■■□□□ 1.82
SNX1-206ENST00000559389 EGFRP00533 1210 aa26.43■■□□□ 1.82
SNX1-206ENST00000559389 LDHBP07195 334 aaKnown RBP26.43■■□□□ 1.82
SNX1-206ENST00000559389 KIF4BQ2VIQ3 1234 aa26.43■■□□□ 1.82
SNX1-206ENST00000559389 PI4K2BQ8TCG2 481 aa26.43■■□□□ 1.82
SNX1-206ENST00000559389 BOLA2Q9H3K6 86 aa26.43■■□□□ 1.82
SNX1-206ENST00000559389 MYOZ2Q9NPC6 264 aa26.43■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms