RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 ATP5J2-PTCD1G3V325 749 aa12.69□□□□□ -0.38
USP3-206ENST00000558157 GOLGA6L19H0YKK7 550 aa12.69□□□□□ -0.38
USP3-206ENST00000558157 CLGNO14967 610 aa12.69□□□□□ -0.38
USP3-206ENST00000558157 TRIM37O94972 964 aa12.69□□□□□ -0.38
USP3-206ENST00000558157 CCZ1BP86790 482 aa12.69□□□□□ -0.38
USP3-206ENST00000558157 CCZ1P86791 482 aaPredicted RBP12.69□□□□□ -0.38
USP3-206ENST00000558157 EXOC4Q96A65 974 aa12.69□□□□□ -0.38
USP3-206ENST00000558157 TRERF1Q96PN7 1200 aa12.69□□□□□ -0.38
USP3-206ENST00000558157 CCNL1Q9UK58 526 aaPredicted RBP12.69□□□□□ -0.38
USP3-206ENST00000558157 USP27XA6NNY8 438 aa12.68□□□□□ -0.38
USP3-206ENST00000558157 PDCP20941 246 aa12.68□□□□□ -0.38
USP3-206ENST00000558157 AK2P54819 239 aa12.68□□□□□ -0.38
USP3-206ENST00000558157 ERCC6LQ2NKX8 1250 aa12.68□□□□□ -0.38
USP3-206ENST00000558157 SRLQ86TD4 932 aa12.68□□□□□ -0.38
USP3-206ENST00000558157 SECISBP2LQ93073 1101 aaKnown RBP12.68□□□□□ -0.38
USP3-206ENST00000558157 MYCBPQ99417 103 aaPredicted RBP12.68□□□□□ -0.38
USP3-206ENST00000558157 NCAPGQ9BPX3 1015 aa12.68□□□□□ -0.38
USP3-206ENST00000558157 LRRCC1Q9C099 1032 aa12.68□□□□□ -0.38
USP3-206ENST00000558157 C9orf78Q9NZ63 289 aaPredicted RBP12.68□□□□□ -0.38
USP3-206ENST00000558157 IMPACTQ9P2X3 320 aa12.68□□□□□ -0.38
USP3-206ENST00000558157 MAP3K15Q6ZN16 1313 aa12.68□□□□□ -0.38
USP3-206ENST00000558157 GRM8O00222 908 aa12.68□□□□□ -0.38
USP3-206ENST00000558157 GJB2P29033 226 aa12.68□□□□□ -0.38
USP3-206ENST00000558157 EIF5P55010 431 aaKnown RBP12.68□□□□□ -0.38
USP3-206ENST00000558157 SNW1Q13573 536 aaKnown RBP12.68□□□□□ -0.38
USP3-206ENST00000558157 GCKRQ14397 625 aa12.68□□□□□ -0.38
USP3-206ENST00000558157 RUFY3Q7L099 469 aa12.68□□□□□ -0.38
USP3-206ENST00000558157 CCDC191Q8NCU4 936 aa12.68□□□□□ -0.38
USP3-206ENST00000558157 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.68□□□□□ -0.38
USP3-206ENST00000558157 NUP98P52948 1817 aa12.68□□□□□ -0.38
USP3-206ENST00000558157 BCORQ6W2J9 1755 aa12.67□□□□□ -0.38
USP3-206ENST00000558157 C4BP0C0L5 1744 aa12.67□□□□□ -0.38
USP3-206ENST00000558157 GOLGA6L4A6NEF3 574 aa12.67□□□□□ -0.38
USP3-206ENST00000558157 CCDC69A6NI79 296 aa12.67□□□□□ -0.38
USP3-206ENST00000558157 APBB1O00213 710 aa12.67□□□□□ -0.38
USP3-206ENST00000558157 CCP110O43303 1012 aa12.67□□□□□ -0.38
USP3-206ENST00000558157 IVLP07476 585 aa12.67□□□□□ -0.38
USP3-206ENST00000558157 GUCY2CP25092 1073 aa12.67□□□□□ -0.38
USP3-206ENST00000558157 ARHGAP29Q52LW3 1261 aa12.67□□□□□ -0.38
USP3-206ENST00000558157 TTC6Q86TZ1 520 aa12.67□□□□□ -0.38
USP3-206ENST00000558157 CERS3Q8IU89 383 aa12.67□□□□□ -0.38
USP3-206ENST00000558157 NEK11Q8NG66 645 aa12.67□□□□□ -0.38
USP3-206ENST00000558157 DACT1Q9NYF0 836 aa12.67□□□□□ -0.38
USP3-206ENST00000558157 UTYO14607 1347 aa12.67□□□□□ -0.38
USP3-206ENST00000558157 CNTNAP4Q9C0A0 1308 aa12.67□□□□□ -0.38
USP3-206ENST00000558157 COL15A1P39059 1388 aa12.67□□□□□ -0.38
USP3-206ENST00000558157 A0A1B0GUL7 405 aa12.67□□□□□ -0.38
USP3-206ENST00000558157 LIG1P18858 919 aa12.67□□□□□ -0.38
USP3-206ENST00000558157 DZIP3Q86Y13 1208 aaKnown RBP12.67□□□□□ -0.38
USP3-206ENST00000558157 SNX14Q9Y5W7 946 aa12.67□□□□□ -0.38
USP3-206ENST00000558157 TNS1Q9HBL0 1735 aaKnown RBP12.66□□□□□ -0.38
USP3-206ENST00000558157 NRDCO43847 1150 aa12.66□□□□□ -0.38
USP3-206ENST00000558157 CCDC158Q5M9N0 1113 aa12.66□□□□□ -0.38
USP3-206ENST00000558157 VPS53Q5VIR6 699 aa12.66□□□□□ -0.38
USP3-206ENST00000558157 UBXN4Q92575 508 aa12.66□□□□□ -0.38
USP3-206ENST00000558157 OSBPL5Q9H0X9 879 aaPredicted RBP12.66□□□□□ -0.38
USP3-206ENST00000558157 ORC3Q9UBD5 711 aaPredicted RBP12.66□□□□□ -0.38
USP3-206ENST00000558157 TBC1D2BQ9UPU7 963 aa12.66□□□□□ -0.38
USP3-206ENST00000558157 CTAGE5O15320 804 aa12.66□□□□□ -0.38
USP3-206ENST00000558157 IQCB1Q15051 598 aa12.66□□□□□ -0.38
USP3-206ENST00000558157 HLFQ16534 295 aa12.66□□□□□ -0.38
USP3-206ENST00000558157 CAMK4Q16566 473 aa12.66□□□□□ -0.38
USP3-206ENST00000558157 C10orf67Q8IYJ2 551 aa12.66□□□□□ -0.38
USP3-206ENST00000558157 RILPL2Q969X0 211 aa12.66□□□□□ -0.38
USP3-206ENST00000558157 SUCLG2Q96I99 432 aa12.66□□□□□ -0.38
USP3-206ENST00000558157 TM6SF1Q9BZW5 370 aa12.66□□□□□ -0.38
USP3-206ENST00000558157 PHLPP2Q6ZVD8 1323 aa12.65□□□□□ -0.38
USP3-206ENST00000558157 SCN7AQ01118 1682 aa12.65□□□□□ -0.38
USP3-206ENST00000558157 PNMA6EA0A0J9YXQ4 647 aa12.65□□□□□ -0.38
USP3-206ENST00000558157 PSEN1P49768 467 aa12.65□□□□□ -0.38
USP3-206ENST00000558157 CKAP2LQ8IYA6 745 aa12.65□□□□□ -0.38
USP3-206ENST00000558157 SMARCE1Q969G3 411 aa12.65□□□□□ -0.38
USP3-206ENST00000558157 EFCAB8A8MWE9 144 aa12.64□□□□□ -0.39
USP3-206ENST00000558157 CASTP20810 708 aaKnown RBP12.64□□□□□ -0.39
USP3-206ENST00000558157 ATP8B2P98198 1209 aa12.64□□□□□ -0.39
USP3-206ENST00000558157 TCIRG1Q13488 830 aa12.64□□□□□ -0.39
USP3-206ENST00000558157 TPRNQ4KMQ1 711 aa12.64□□□□□ -0.39
USP3-206ENST00000558157 GIGYF2Q6Y7W6 1299 aaKnown RBP12.64□□□□□ -0.39
USP3-206ENST00000558157 CCDC150Q8NCX0 1101 aa12.64□□□□□ -0.39
USP3-206ENST00000558157 ISCA1Q9BUE6 129 aa12.64□□□□□ -0.39
USP3-206ENST00000558157 CWC25Q9NXE8 425 aaPredicted RBP12.64□□□□□ -0.39
USP3-206ENST00000558157 RRP15Q9Y3B9 282 aaKnown RBP12.64□□□□□ -0.39
USP3-206ENST00000558157 SGSM2O43147 1006 aa12.64□□□□□ -0.39
USP3-206ENST00000558157 DNAJC25Q9H1X3 360 aa12.64□□□□□ -0.39
USP3-206ENST00000558157 LRRC4BQ9NT99 713 aa12.64□□□□□ -0.39
USP3-206ENST00000558157 A0A087WZG4 1122 aa12.63□□□□□ -0.39
USP3-206ENST00000558157 RPS6KA5O75582 802 aa12.63□□□□□ -0.39
USP3-206ENST00000558157 ACTN2P35609 894 aa12.63□□□□□ -0.39
USP3-206ENST00000558157 MAGEA9P43362 315 aa12.63□□□□□ -0.39
USP3-206ENST00000558157 STX1AQ16623 288 aa12.63□□□□□ -0.39
USP3-206ENST00000558157 SMIM5Q71RC9 77 aa12.63□□□□□ -0.39
USP3-206ENST00000558157 UBE3BQ7Z3V4 1068 aa12.63□□□□□ -0.39
USP3-206ENST00000558157 KAZALD1Q96I82 304 aa12.63□□□□□ -0.39
USP3-206ENST00000558157 C4AP0C0L4 1744 aa12.63□□□□□ -0.39
USP3-206ENST00000558157 VPS37CA5D8V6 355 aaPredicted RBP12.63□□□□□ -0.39
USP3-206ENST00000558157 ERVV-1B6SEH8 477 aa12.63□□□□□ -0.39
USP3-206ENST00000558157 POLR3GO15318 223 aaPredicted RBP12.63□□□□□ -0.39
USP3-206ENST00000558157 CAMTA2O94983 1202 aa12.63□□□□□ -0.39
USP3-206ENST00000558157 OAS2P29728 719 aaKnown RBP12.63□□□□□ -0.39
USP3-206ENST00000558157 SMC1AQ14683 1233 aaKnown RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms