RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 FER1L4A9Z1Z3 1794 aa20.4■□□□□ 0.86
SYNE3-202ENST00000553340 MAST3O60307 1309 aa20.4■□□□□ 0.86
SYNE3-202ENST00000553340 KCNJ6P48051 423 aa20.4■□□□□ 0.86
SYNE3-202ENST00000553340 TAF3Q5VWG9 929 aa20.4■□□□□ 0.86
SYNE3-202ENST00000553340 GPR108Q9NPR9 543 aa20.4■□□□□ 0.86
SYNE3-202ENST00000553340 SCN11AQ9UI33 1791 aa20.4■□□□□ 0.86
SYNE3-202ENST00000553340 RNF113AO15541 343 aaKnown RBP20.4■□□□□ 0.86
SYNE3-202ENST00000553340 EVCP57679 992 aa20.4■□□□□ 0.86
SYNE3-202ENST00000553340 C8orf76Q96K31 380 aa20.4■□□□□ 0.86
SYNE3-202ENST00000553340 POLR3EQ9NVU0 708 aa20.4■□□□□ 0.86
SYNE3-202ENST00000553340 CLIC4Q9Y696 253 aa20.4■□□□□ 0.86
SYNE3-202ENST00000553340 ERBB3P21860 1342 aa20.39■□□□□ 0.85
SYNE3-202ENST00000553340 SLC3A2P08195 630 aaKnown RBP20.39■□□□□ 0.85
SYNE3-202ENST00000553340 PHKG2P15735 406 aa20.39■□□□□ 0.85
SYNE3-202ENST00000553340 TIMM10P62072 90 aa20.39■□□□□ 0.85
SYNE3-202ENST00000553340 PPP1R13BQ96KQ4 1090 aa20.39■□□□□ 0.85
SYNE3-202ENST00000553340 L2HGDHQ9H9P8 463 aa20.39■□□□□ 0.85
SYNE3-202ENST00000553340 SPTLC2O15270 562 aa20.39■□□□□ 0.85
SYNE3-202ENST00000553340 DHX16O60231 1041 aaKnown RBP20.39■□□□□ 0.85
SYNE3-202ENST00000553340 TUBB4AP04350 444 aa20.39■□□□□ 0.85
SYNE3-202ENST00000553340 ARMCX5Q6P1M9 558 aa20.39■□□□□ 0.85
SYNE3-202ENST00000553340 ATG9AQ7Z3C6 839 aa20.39■□□□□ 0.85
SYNE3-202ENST00000553340 FAM53CQ9NYF3 392 aa20.39■□□□□ 0.85
SYNE3-202ENST00000553340 POLR3DP05423 398 aaPredicted RBP20.38■□□□□ 0.85
SYNE3-202ENST00000553340 TERF2Q15554 542 aa20.38■□□□□ 0.85
SYNE3-202ENST00000553340 PLBD2Q8NHP8 589 aa20.38■□□□□ 0.85
SYNE3-202ENST00000553340 ORAI2Q96SN7 254 aa20.38■□□□□ 0.85
SYNE3-202ENST00000553340 IFIT1P09914 478 aaKnown RBP20.38■□□□□ 0.85
SYNE3-202ENST00000553340 NLRP12P59046 1061 aa20.38■□□□□ 0.85
SYNE3-202ENST00000553340 BRAPQ7Z569 592 aa20.38■□□□□ 0.85
SYNE3-202ENST00000553340 FMNL2Q96PY5 1086 aa20.38■□□□□ 0.85
SYNE3-202ENST00000553340 TATP17735 454 aaPredicted RBP20.37■□□□□ 0.85
SYNE3-202ENST00000553340 IL15P40933 162 aaPredicted RBP20.37■□□□□ 0.85
SYNE3-202ENST00000553340 FOXO4P98177 505 aa20.37■□□□□ 0.85
SYNE3-202ENST00000553340 OTUD7BQ6GQQ9 843 aa20.37■□□□□ 0.85
SYNE3-202ENST00000553340 ARFGEF2Q9Y6D5 1785 aa20.37■□□□□ 0.85
SYNE3-202ENST00000553340 ZNF202O95125 648 aa20.37■□□□□ 0.85
SYNE3-202ENST00000553340 SYT10Q6XYQ8 523 aa20.37■□□□□ 0.85
SYNE3-202ENST00000553340 FBXO18Q8NFZ0 1043 aa20.37■□□□□ 0.85
SYNE3-202ENST00000553340 MYSM1Q5VVJ2 828 aa20.36■□□□□ 0.85
SYNE3-202ENST00000553340 TTLL5Q6EMB2 1281 aa20.36■□□□□ 0.85
SYNE3-202ENST00000553340 SYNE3Q6ZMZ3 975 aa20.36■□□□□ 0.85
SYNE3-202ENST00000553340 NEDD4P46934 1319 aa20.36■□□□□ 0.85
SYNE3-202ENST00000553340 BIN1O00499 593 aa20.36■□□□□ 0.85
SYNE3-202ENST00000553340 IFNL2Q8IZJ0 200 aa20.36■□□□□ 0.85
SYNE3-202ENST00000553340 NLRP2Q9NX02 1062 aa20.36■□□□□ 0.85
SYNE3-202ENST00000553340 H7C1W4 665 aa20.35■□□□□ 0.85
SYNE3-202ENST00000553340 ORC3Q9UBD5 711 aaPredicted RBP20.35■□□□□ 0.85
SYNE3-202ENST00000553340 M0R2C6 588 aa20.35■□□□□ 0.85
SYNE3-202ENST00000553340 NPHP1O15259 732 aa20.35■□□□□ 0.85
SYNE3-202ENST00000553340 ANKLE2Q86XL3 938 aa20.35■□□□□ 0.85
SYNE3-202ENST00000553340 CCP110O43303 1012 aa20.34■□□□□ 0.85
SYNE3-202ENST00000553340 NCAPHQ15003 741 aa20.34■□□□□ 0.85
SYNE3-202ENST00000553340 ERCC6LQ2NKX8 1250 aa20.34■□□□□ 0.85
SYNE3-202ENST00000553340 CCDC93Q567U6 631 aa20.34■□□□□ 0.85
SYNE3-202ENST00000553340 GPHNQ9NQX3 736 aaPredicted RBP20.34■□□□□ 0.85
SYNE3-202ENST00000553340 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.34■□□□□ 0.851e-7■■■□□ 18.9
SYNE3-202ENST00000553340 RGPD5Q99666 1765 aa20.34■□□□□ 0.85
SYNE3-202ENST00000553340 CMA1P23946 247 aa20.34■□□□□ 0.85
SYNE3-202ENST00000553340 IMMTQ16891 758 aaKnown RBP20.34■□□□□ 0.85
SYNE3-202ENST00000553340 LRRFIP1Q32MZ4 808 aaKnown RBP20.34■□□□□ 0.85
SYNE3-202ENST00000553340 KLF18A0A0U1RQI7 1052 aa20.33■□□□□ 0.85
SYNE3-202ENST00000553340 CPLX1O14810 134 aa20.33■□□□□ 0.85
SYNE3-202ENST00000553340 IKBKBO14920 756 aa20.33■□□□□ 0.85
SYNE3-202ENST00000553340 H2AFXP16104 143 aaPredicted RBP20.33■□□□□ 0.85
SYNE3-202ENST00000553340 BMS1Q14692 1282 aaKnown RBP20.33■□□□□ 0.85
SYNE3-202ENST00000553340 ANO1Q5XXA6 986 aa20.33■□□□□ 0.85
SYNE3-202ENST00000553340 GOLGA8BA8MQT2 603 aa20.33■□□□□ 0.84
SYNE3-202ENST00000553340 FANCCQ00597 558 aa20.33■□□□□ 0.84
SYNE3-202ENST00000553340 HOMER1Q86YM7 354 aa20.33■□□□□ 0.84
SYNE3-202ENST00000553340 OSBP2Q969R2 916 aa20.33■□□□□ 0.84
SYNE3-202ENST00000553340 DCAF5Q96JK2 942 aa20.33■□□□□ 0.84
SYNE3-202ENST00000553340 ZNF446Q9NWS9 450 aa20.33■□□□□ 0.84
SYNE3-202ENST00000553340 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.33■□□□□ 0.84
SYNE3-202ENST00000553340 A0A1B0GUL7 405 aa20.32■□□□□ 0.84
SYNE3-202ENST00000553340 EYA2O00167 538 aa20.32■□□□□ 0.84
SYNE3-202ENST00000553340 PRC1O43663 620 aa20.32■□□□□ 0.84
SYNE3-202ENST00000553340 PFKFB1P16118 471 aa20.32■□□□□ 0.84
SYNE3-202ENST00000553340 LMOD1P29536 600 aaPredicted RBP20.32■□□□□ 0.84
SYNE3-202ENST00000553340 ZC3H6P61129 1189 aaKnown RBP20.32■□□□□ 0.84
SYNE3-202ENST00000553340 SPEF2Q9C093 1822 aa20.32■□□□□ 0.84
SYNE3-202ENST00000553340 AXDND1Q5T1B0 1012 aaPredicted RBP20.32■□□□□ 0.84
SYNE3-202ENST00000553340 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.32■□□□□ 0.84
SYNE3-202ENST00000553340 HAND2P61296 217 aa20.31■□□□□ 0.84
SYNE3-202ENST00000553340 SYTL4Q96C24 671 aaPredicted RBP20.31■□□□□ 0.84
SYNE3-202ENST00000553340 CWC25Q9NXE8 425 aaPredicted RBP20.31■□□□□ 0.84
SYNE3-202ENST00000553340 ETF1P62495 437 aaKnown RBP20.31■□□□□ 0.84
SYNE3-202ENST00000553340 FAM193AP78312 1265 aa20.31■□□□□ 0.84
SYNE3-202ENST00000553340 LRRC24Q50LG9 513 aa20.31■□□□□ 0.84
SYNE3-202ENST00000553340 KRT28Q7Z3Y7 464 aa20.31■□□□□ 0.84
SYNE3-202ENST00000553340 TIGD1Q96MW7 591 aa20.31■□□□□ 0.84
SYNE3-202ENST00000553340 HPS5Q9UPZ3 1129 aa20.31■□□□□ 0.84
SYNE3-202ENST00000553340 TMEM94Q12767 1356 aa20.3■□□□□ 0.84
SYNE3-202ENST00000553340 FKBP4Q02790 459 aaKnown RBP eCLIP20.3■□□□□ 0.84
SYNE3-202ENST00000553340 KIF23Q02241 960 aaPredicted RBP20.3■□□□□ 0.84
SYNE3-202ENST00000553340 WASHC4Q2M389 1173 aa20.3■□□□□ 0.84
SYNE3-202ENST00000553340 MB21D2Q8IYB1 491 aaPredicted RBP20.3■□□□□ 0.84
SYNE3-202ENST00000553340 PHLPP2Q6ZVD8 1323 aa20.29■□□□□ 0.84
SYNE3-202ENST00000553340 KIF28PB7ZC32 967 aa20.29■□□□□ 0.84
SYNE3-202ENST00000553340 CBFA2T2O43439 604 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms