RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 KLRK1P26718 216 aa21.59■■□□□ 1.05
VPS29-204ENST00000548259 RBM5P52756 815 aaKnown RBP eCLIP21.59■■□□□ 1.05
VPS29-204ENST00000548259 FKBP1AP62942 108 aaKnown RBP21.59■■□□□ 1.05
VPS29-204ENST00000548259 TNFAIP1Q13829 316 aa21.59■■□□□ 1.05
VPS29-204ENST00000548259 CFAP100Q494V2 611 aa21.59■■□□□ 1.05
VPS29-204ENST00000548259 TSPYL6Q8N831 410 aa21.59■■□□□ 1.05
VPS29-204ENST00000548259 CLMNQ96JQ2 1002 aa21.59■■□□□ 1.05
VPS29-204ENST00000548259 TMEM106CQ9BVX2 250 aa21.59■■□□□ 1.05
VPS29-204ENST00000548259 FZD1Q9UP38 647 aa21.59■■□□□ 1.05
VPS29-204ENST00000548259 POTEFA5A3E0 1075 aa21.58■■□□□ 1.05
VPS29-204ENST00000548259 SPDYE2BA6NHP3 402 aa21.58■■□□□ 1.05
VPS29-204ENST00000548259 SLC4A2P04920 1241 aa21.58■■□□□ 1.05
VPS29-204ENST00000548259 CSF1RP07333 972 aa21.58■■□□□ 1.05
VPS29-204ENST00000548259 SPDYE6P0CI01 402 aa21.58■■□□□ 1.05
VPS29-204ENST00000548259 SP3Q02447 781 aa21.58■■□□□ 1.05
VPS29-204ENST00000548259 C15orf52Q6ZUT6 534 aaKnown RBP21.58■■□□□ 1.05
VPS29-204ENST00000548259 CD99L2Q8TCZ2 262 aa21.58■■□□□ 1.05
VPS29-204ENST00000548259 CLRN2A0PK11 232 aa21.57■■□□□ 1.04
VPS29-204ENST00000548259 F8W031 263 aaPredicted RBP21.57■■□□□ 1.04
VPS29-204ENST00000548259 WDHD1O75717 1129 aaPredicted RBP21.57■■□□□ 1.04
VPS29-204ENST00000548259 CRHR2Q13324 411 aa21.57■■□□□ 1.04
VPS29-204ENST00000548259 IFIT5Q13325 482 aaKnown RBP21.57■■□□□ 1.04
VPS29-204ENST00000548259 NBPF11Q86T75 865 aa21.57■■□□□ 1.04
VPS29-204ENST00000548259 ARMC5Q96C12 935 aa21.57■■□□□ 1.04
VPS29-204ENST00000548259 TWISTNBQ3B726 338 aaPredicted RBP21.56■■□□□ 1.04
VPS29-204ENST00000548259 LINS1Q8NG48 757 aa21.56■■□□□ 1.04
VPS29-204ENST00000548259 IL1R1P14778 569 aa21.55■■□□□ 1.04
VPS29-204ENST00000548259 FKBP5Q13451 457 aaPredicted RBP21.55■■□□□ 1.04
VPS29-204ENST00000548259 RASA3Q14644 834 aa21.55■■□□□ 1.04
VPS29-204ENST00000548259 NBPF12Q5TAG4 269 aaPredicted RBP21.55■■□□□ 1.04
VPS29-204ENST00000548259 CERS5Q8N5B7 392 aa21.55■■□□□ 1.04
VPS29-204ENST00000548259 FLIIQ13045 1269 aa21.54■■□□□ 1.04
VPS29-204ENST00000548259 DNAAF4Q8WXU2 420 aa21.54■■□□□ 1.04
VPS29-204ENST00000548259 TSR2Q969E8 191 aaKnown RBP21.54■■□□□ 1.04
VPS29-204ENST00000548259 PRMT6Q96LA8 375 aaPredicted RBP21.54■■□□□ 1.04
VPS29-204ENST00000548259 PRKRIP1Q9H875 184 aaPredicted RBP21.54■■□□□ 1.04
VPS29-204ENST00000548259 CHMP3Q9Y3E7 222 aa21.54■■□□□ 1.04
VPS29-204ENST00000548259 MYH3P11055 1940 aa21.53■■□□□ 1.04
VPS29-204ENST00000548259 TESPA1A2RU30 521 aaPredicted RBP21.53■■□□□ 1.04
VPS29-204ENST00000548259 TAF5LO75529 589 aa21.53■■□□□ 1.04
VPS29-204ENST00000548259 USP2O75604 605 aaPredicted RBP21.53■■□□□ 1.04
VPS29-204ENST00000548259 TAF7LQ5H9L4 462 aa21.53■■□□□ 1.04
VPS29-204ENST00000548259 CASP7P55210 303 aa21.52■■□□□ 1.04
VPS29-204ENST00000548259 SLC9C1Q4G0N8 1177 aa21.52■■□□□ 1.04
VPS29-204ENST00000548259 G2E3Q7L622 706 aa21.52■■□□□ 1.04
VPS29-204ENST00000548259 HELBQ8NG08 1087 aaPredicted RBP21.52■■□□□ 1.04
VPS29-204ENST00000548259 OPTNQ96CV9 577 aa21.52■■□□□ 1.04
VPS29-204ENST00000548259 ZFYVE28Q9HCC9 887 aa21.52■■□□□ 1.04
VPS29-204ENST00000548259 SSC5DA1L4H1 1573 aa21.52■■□□□ 1.04
VPS29-204ENST00000548259 EN2P19622 333 aaPredicted RBP21.51■■□□□ 1.03
VPS29-204ENST00000548259 TNNI2P48788 182 aa21.51■■□□□ 1.03
VPS29-204ENST00000548259 CCDC57Q2TAC2 916 aa21.51■■□□□ 1.03
VPS29-204ENST00000548259 ELP3Q9H9T3 547 aa21.51■■□□□ 1.03
VPS29-204ENST00000548259 SPEF2Q9C093 1822 aa21.5■■□□□ 1.03
VPS29-204ENST00000548259 GTF2A2P52657 109 aa21.5■■□□□ 1.03
VPS29-204ENST00000548259 SLC4A8Q2Y0W8 1093 aa21.5■■□□□ 1.03
VPS29-204ENST00000548259 SERPINA10Q9UK55 444 aa21.5■■□□□ 1.03
VPS29-204ENST00000548259 CSADQ9Y600 493 aa21.5■■□□□ 1.03
VPS29-204ENST00000548259 HTTP42858 3142 aa21.49■■□□□ 1.03
VPS29-204ENST00000548259 SNAP23O00161 211 aa21.49■■□□□ 1.03
VPS29-204ENST00000548259 GJA5P36382 358 aa21.49■■□□□ 1.03
VPS29-204ENST00000548259 KIF22Q14807 665 aa21.49■■□□□ 1.03
VPS29-204ENST00000548259 TAF1CQ15572 869 aaPredicted RBP21.49■■□□□ 1.03
VPS29-204ENST00000548259 CCDC27Q2M243 656 aa21.49■■□□□ 1.03
VPS29-204ENST00000548259 LDHAL6AQ6ZMR3 332 aa21.49■■□□□ 1.03
VPS29-204ENST00000548259 PTPN18Q99952 460 aa21.49■■□□□ 1.03
VPS29-204ENST00000548259 CNNM1Q9NRU3 951 aa21.49■■□□□ 1.03
VPS29-204ENST00000548259 PCDHAC2Q9Y5I4 1007 aa21.49■■□□□ 1.03
VPS29-204ENST00000548259 ZNF646O15015 1829 aaPredicted RBP21.49■■□□□ 1.03
VPS29-204ENST00000548259 IRS2Q9Y4H2 1338 aa21.49■■□□□ 1.03
VPS29-204ENST00000548259 PLIN1O60240 522 aa21.48■■□□□ 1.03
VPS29-204ENST00000548259 SPDYE2Q495Y8 402 aa21.48■■□□□ 1.03
VPS29-204ENST00000548259 MFSD14BQ5SR56 506 aa21.48■■□□□ 1.03
VPS29-204ENST00000548259 ZNF333Q96JL9 665 aa21.48■■□□□ 1.03
VPS29-204ENST00000548259 ZNF70Q9UC06 446 aaPredicted RBP21.48■■□□□ 1.03
VPS29-204ENST00000548259 TTF2Q9UNY4 1162 aaKnown RBP21.48■■□□□ 1.03
VPS29-204ENST00000548259 JAG2Q9Y219 1238 aa21.48■■□□□ 1.03
VPS29-204ENST00000548259 CCL15-CCL14A0A0B4J2E2 113 aa21.47■■□□□ 1.03
VPS29-204ENST00000548259 MAP3K9P80192 1104 aa21.47■■□□□ 1.03
VPS29-204ENST00000548259 CCL15Q16663 113 aa21.47■■□□□ 1.03
VPS29-204ENST00000548259 FAM205AQ6ZU69 1335 aa21.47■■□□□ 1.03
VPS29-204ENST00000548259 MS4A4AQ96JQ5 239 aa21.46■■□□□ 1.03
VPS29-204ENST00000548259 IL16Q14005 1332 aa21.46■■□□□ 1.03
VPS29-204ENST00000548259 MKI67P46013 3256 aaKnown RBP21.46■■□□□ 1.03
VPS29-204ENST00000548259 KIAA0100Q14667 2235 aaKnown RBP21.45■■□□□ 1.03
VPS29-204ENST00000548259 FOXO4P98177 505 aa21.45■■□□□ 1.02
VPS29-204ENST00000548259 LMBR1LQ6UX01 489 aa21.45■■□□□ 1.02
VPS29-204ENST00000548259 HOOK2Q96ED9 719 aa21.45■■□□□ 1.02
VPS29-204ENST00000548259 TDRD3Q9H7E2 651 aaKnown RBP21.45■■□□□ 1.02
VPS29-204ENST00000548259 HIBADHP31937 336 aaKnown RBP21.44■■□□□ 1.02
VPS29-204ENST00000548259 UBE4AQ14139 1066 aa21.44■■□□□ 1.02
VPS29-204ENST00000548259 WWC1Q8IX03 1113 aa21.44■■□□□ 1.02
VPS29-204ENST00000548259 DZIP1LQ8IYY4 767 aaKnown RBP21.44■■□□□ 1.02
VPS29-204ENST00000548259 BRI3BPQ8WY22 251 aa21.44■■□□□ 1.02
VPS29-204ENST00000548259 PTCH2Q9Y6C5 1203 aa21.44■■□□□ 1.02
VPS29-204ENST00000548259 TCP10L2B9ZVM9 353 aa21.43■■□□□ 1.02
VPS29-204ENST00000548259 GNRH1P01148 92 aa21.43■■□□□ 1.02
VPS29-204ENST00000548259 CETPP11597 493 aa21.43■■□□□ 1.02
VPS29-204ENST00000548259 FXR1P51114 621 aaKnown RBP eCLIP21.43■■□□□ 1.02
VPS29-204ENST00000548259 VGLL4Q14135 290 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms