RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 GOLGA6L6A8MZA4 724 aa6.58□□□□□ -1.36
LIMA1-203ENST00000547825 FYB1O15117 783 aa6.58□□□□□ -1.36
LIMA1-203ENST00000547825 FBLN1P23142 703 aa6.58□□□□□ -1.36
LIMA1-203ENST00000547825 RBM6P78332 1123 aaKnown RBP6.58□□□□□ -1.36
LIMA1-203ENST00000547825 ARFGEF2Q9Y6D5 1785 aa6.58□□□□□ -1.36
LIMA1-203ENST00000547825 FMNL1O95466 1100 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-203ENST00000547825 STAU1O95793 577 aaKnown RBP6.58□□□□□ -1.36
LIMA1-203ENST00000547825 GCP02774 474 aa6.58□□□□□ -1.36
LIMA1-203ENST00000547825 PDXDC2PQ6P474 469 aa6.58□□□□□ -1.36
LIMA1-203ENST00000547825 TRERF1Q96PN7 1200 aa6.58□□□□□ -1.36
LIMA1-203ENST00000547825 HPS5Q9UPZ3 1129 aa6.58□□□□□ -1.36
LIMA1-203ENST00000547825 THRAP3Q9Y2W1 955 aaKnown RBP6.58□□□□□ -1.36
LIMA1-203ENST00000547825 K7ELQ4 463 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-203ENST00000547825 FIBPO43427 364 aa6.58□□□□□ -1.36
LIMA1-203ENST00000547825 PTK2Q05397 1052 aa6.58□□□□□ -1.36
LIMA1-203ENST00000547825 ZNF830Q96NB3 372 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-203ENST00000547825 MAP7D2Q96T17 732 aa6.58□□□□□ -1.36
LIMA1-203ENST00000547825 FAM205CA6NFA0 338 aa6.57□□□□□ -1.36
LIMA1-203ENST00000547825 HSP90B1P14625 803 aaKnown RBP6.57□□□□□ -1.36
LIMA1-203ENST00000547825 CCDC102BQ68D86 513 aa6.57□□□□□ -1.36
LIMA1-203ENST00000547825 ARHGAP9Q9BRR9 750 aa6.57□□□□□ -1.36
LIMA1-203ENST00000547825 CCDC39Q9UFE4 941 aa6.57□□□□□ -1.36
LIMA1-203ENST00000547825 A0A0G2JS52 829 aa6.57□□□□□ -1.36
LIMA1-203ENST00000547825 GTF2IP78347 998 aa6.57□□□□□ -1.36
LIMA1-203ENST00000547825 SWI5Q1ZZU3 235 aa6.57□□□□□ -1.36
LIMA1-203ENST00000547825 RTF1Q92541 710 aaKnown RBP6.57□□□□□ -1.36
LIMA1-203ENST00000547825 WDR17Q8IZU2 1322 aa6.57□□□□□ -1.36
LIMA1-203ENST00000547825 C4orf48Q5BLP8 95 aa6.57□□□□□ -1.36
LIMA1-203ENST00000547825 TSEN2Q8NCE0 465 aaKnown RBP6.57□□□□□ -1.36
LIMA1-203ENST00000547825 CHAMP1Q96JM3 812 aa6.57□□□□□ -1.36
LIMA1-203ENST00000547825 PLEKHF1Q96S99 279 aa6.57□□□□□ -1.36
LIMA1-203ENST00000547825 TRPC5Q9UL62 973 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-203ENST00000547825 SCN7AQ01118 1682 aa6.57□□□□□ -1.36
LIMA1-203ENST00000547825 REC8O95072 547 aa6.57□□□□□ -1.36
LIMA1-203ENST00000547825 MVPQ14764 893 aaKnown RBP6.57□□□□□ -1.36
LIMA1-203ENST00000547825 DNMT3AQ9Y6K1 912 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-203ENST00000547825 TCHHQ07283 1943 aa6.56□□□□□ -1.36
LIMA1-203ENST00000547825 HMMRO75330 724 aa6.56□□□□□ -1.36
LIMA1-203ENST00000547825 CDC45O75419 566 aa6.56□□□□□ -1.36
LIMA1-203ENST00000547825 DXOO77932 396 aaKnown RBP6.56□□□□□ -1.36
LIMA1-203ENST00000547825 PPP4CP60510 307 aa6.56□□□□□ -1.36
LIMA1-203ENST00000547825 TMEM57Q8N5G2 664 aa6.56□□□□□ -1.36
LIMA1-203ENST00000547825 OTUD5Q96G74 571 aa6.56□□□□□ -1.36
LIMA1-203ENST00000547825 CXXC1Q9P0U4 656 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-203ENST00000547825 DOLKQ9UPQ8 538 aa6.56□□□□□ -1.36
LIMA1-203ENST00000547825 MYH14Q7Z406 1995 aaKnown RBP6.56□□□□□ -1.36
LIMA1-203ENST00000547825 ERICH4A6NGS2 130 aa6.56□□□□□ -1.36
LIMA1-203ENST00000547825 BECN2A8MW95 431 aa6.56□□□□□ -1.36
LIMA1-203ENST00000547825 SNPHO15079 494 aa6.56□□□□□ -1.36
LIMA1-203ENST00000547825 GNL2Q13823 731 aaKnown RBP6.56□□□□□ -1.36
LIMA1-203ENST00000547825 HDGFL2Q7Z4V5 671 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-203ENST00000547825 CREBRFQ8IUR6 639 aa6.56□□□□□ -1.36
LIMA1-203ENST00000547825 GTF3C2Q8WUA4 911 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-203ENST00000547825 SPSB2Q99619 263 aa6.56□□□□□ -1.36
LIMA1-203ENST00000547825 THUMPD2Q9BTF0 503 aaKnown RBP6.56□□□□□ -1.36
LIMA1-203ENST00000547825 UNC93B1Q9H1C4 597 aa6.56□□□□□ -1.36
LIMA1-203ENST00000547825 WBP1LQ9NX94 342 aa6.56□□□□□ -1.36
LIMA1-203ENST00000547825 USP21Q9UK80 565 aa6.56□□□□□ -1.36
LIMA1-203ENST00000547825 KCPQ6ZWJ8 1503 aa6.56□□□□□ -1.36
LIMA1-203ENST00000547825 NAA30Q147X3 362 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-203ENST00000547825 SKIDA1Q1XH10 827 aa6.56□□□□□ -1.36
LIMA1-203ENST00000547825 INTS3Q68E01 1043 aaKnown RBP6.56□□□□□ -1.36
LIMA1-203ENST00000547825 ZBTB33Q86T24 672 aa6.56□□□□□ -1.36
LIMA1-203ENST00000547825 CCDC24Q8N4L8 307 aa6.56□□□□□ -1.36
LIMA1-203ENST00000547825 KIF16BQ96L93 1317 aa6.55□□□□□ -1.36
LIMA1-203ENST00000547825 GOLGA6L19H0YKK7 550 aa6.55□□□□□ -1.36
LIMA1-203ENST00000547825 TRIM27P14373 513 aa6.55□□□□□ -1.36
LIMA1-203ENST00000547825 TCF3P15923 654 aa6.55□□□□□ -1.36
LIMA1-203ENST00000547825 SH3BP5LQ7L8J4 393 aa6.55□□□□□ -1.36
LIMA1-203ENST00000547825 TSPY26PQ9H489 355 aa6.55□□□□□ -1.36
LIMA1-203ENST00000547825 PCDHGA11Q9Y5H2 935 aa6.55□□□□□ -1.36
LIMA1-203ENST00000547825 ZC3H4Q9UPT8 1303 aaKnown RBP6.55□□□□□ -1.36
LIMA1-203ENST00000547825 FKBP5Q13451 457 aaPredicted RBP6.55□□□□□ -1.36
LIMA1-203ENST00000547825 ATF7IPQ6VMQ6 1270 aa6.55□□□□□ -1.36
LIMA1-203ENST00000547825 TAS1R3Q7RTX0 852 aa6.55□□□□□ -1.36
LIMA1-203ENST00000547825 CHD1LQ86WJ1 897 aa6.55□□□□□ -1.36
LIMA1-203ENST00000547825 NME9Q86XW9 330 aa6.55□□□□□ -1.36
LIMA1-203ENST00000547825 SIX5Q8N196 739 aa6.55□□□□□ -1.36
LIMA1-203ENST00000547825 UPF3BQ9BZI7 483 aaKnown RBP6.55□□□□□ -1.36
LIMA1-203ENST00000547825 QTRT2Q9H974 415 aaKnown RBP6.55□□□□□ -1.36
LIMA1-203ENST00000547825 NOD1Q9Y239 953 aa6.55□□□□□ -1.36
LIMA1-203ENST00000547825 ARHGAP4P98171 946 aa6.55□□□□□ -1.36
LIMA1-203ENST00000547825 LINC01559Q495D7 138 aa6.55□□□□□ -1.36
LIMA1-203ENST00000547825 ADGRD1Q6QNK2 874 aa6.55□□□□□ -1.36
LIMA1-203ENST00000547825 LTV1Q96GA3 475 aaPredicted RBP6.55□□□□□ -1.36
LIMA1-203ENST00000547825 HINFPQ9BQA5 517 aa6.55□□□□□ -1.36
LIMA1-203ENST00000547825 STK31Q9BXU1 1019 aa6.55□□□□□ -1.36
LIMA1-203ENST00000547825 CGNQ9P2M7 1197 aaKnown RBP6.55□□□□□ -1.36
LIMA1-203ENST00000547825 SEC13P55735 322 aa6.54□□□□□ -1.36
LIMA1-203ENST00000547825 RAB15P59190 212 aa6.54□□□□□ -1.36
LIMA1-203ENST00000547825 GORABQ5T7V8 394 aa6.54□□□□□ -1.36
LIMA1-203ENST00000547825 FBXO33Q7Z6M2 555 aa6.54□□□□□ -1.36
LIMA1-203ENST00000547825 SIRT2Q8IXJ6 389 aa6.54□□□□□ -1.36
LIMA1-203ENST00000547825 BICD2Q8TD16 824 aa6.54□□□□□ -1.36
LIMA1-203ENST00000547825 SSH1Q8WYL5 1049 aa6.54□□□□□ -1.36
LIMA1-203ENST00000547825 TRIM5Q9C035 493 aa6.54□□□□□ -1.36
LIMA1-203ENST00000547825 GLYCTKQ8IVS8 523 aa6.54□□□□□ -1.36
LIMA1-203ENST00000547825 LARGE2Q8N3Y3 721 aa6.54□□□□□ -1.36
LIMA1-203ENST00000547825 KCNH5Q8NCM2 988 aa6.54□□□□□ -1.36
LIMA1-203ENST00000547825 FOXJ1Q92949 421 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms