RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	PEAR1	Q5VY43	1037 aa	Predicted RBP	5.07	□□□□□ -1.6
CD44-238	ENST00000534296	CCNJL	Q8IV13	435 aa		5.07	□□□□□ -1.6
CD44-238	ENST00000534296	TMEM130	Q8N3G9	435 aa		5.07	□□□□□ -1.6
CD44-238	ENST00000534296	WFDC12	Q8WWY7	111 aa		5.07	□□□□□ -1.6
CD44-238	ENST00000534296	HHIP	Q96QV1	700 aa		5.07	□□□□□ -1.6
CD44-238	ENST00000534296	SOX17	Q9H6I2	414 aa	Predicted RBP	5.07	□□□□□ -1.6
CD44-238	ENST00000534296	LATS2	Q9NRM7	1088 aa		5.07	□□□□□ -1.6
CD44-238	ENST00000534296		A0A096LPE4	126 aa		5.06	□□□□□ -1.6
CD44-238	ENST00000534296		A0A1W2PPZ6	126 aa		5.06	□□□□□ -1.6
CD44-238	ENST00000534296		F8W735	103 aa	Predicted RBP	5.06	□□□□□ -1.6
CD44-238	ENST00000534296	TREH	O43280	583 aa		5.06	□□□□□ -1.6
CD44-238	ENST00000534296	SND1	Q7KZF4	910 aa	Known RBP eCLIP	5.06	□□□□□ -1.6
CD44-238	ENST00000534296	TP53INP1	Q96A56	240 aa		5.06	□□□□□ -1.6
CD44-238	ENST00000534296	ASB16	Q96NS5	453 aa		5.06	□□□□□ -1.6
CD44-238	ENST00000534296	CLEC4M	Q9H2X3	399 aa	Predicted RBP	5.06	□□□□□ -1.6
CD44-238	ENST00000534296	PNMA6F	A0A0J9YX94	578 aa		5.05	□□□□□ -1.6
CD44-238	ENST00000534296	SART1	O43290	800 aa	Known RBP	5.05	□□□□□ -1.6
CD44-238	ENST00000534296	FURIN	P09958	794 aa		5.05	□□□□□ -1.6
CD44-238	ENST00000534296	NOS3	P29474	1203 aa		5.05	□□□□□ -1.6
CD44-238	ENST00000534296	MAPK8	P45983	427 aa		5.05	□□□□□ -1.6
CD44-238	ENST00000534296	NLRP12	P59046	1061 aa		5.05	□□□□□ -1.6
CD44-238	ENST00000534296	PCDH1	Q08174	1060 aa		5.05	□□□□□ -1.6
CD44-238	ENST00000534296	UVSSA	Q2YD98	709 aa		5.05	□□□□□ -1.6
CD44-238	ENST00000534296	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	5.05	□□□□□ -1.6
CD44-238	ENST00000534296	USPL1	Q5W0Q7	1092 aa		5.05	□□□□□ -1.6
CD44-238	ENST00000534296	ALG1L	Q6GMV1	187 aa		5.05	□□□□□ -1.6
CD44-238	ENST00000534296	FDX2	Q6P4F2	183 aa		5.05	□□□□□ -1.6
CD44-238	ENST00000534296	FOXD4L3	Q6VB84	417 aa	Predicted RBP	5.05	□□□□□ -1.6
CD44-238	ENST00000534296	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	5.05	□□□□□ -1.6
CD44-238	ENST00000534296	GALNT11	Q8NCW6	608 aa		5.05	□□□□□ -1.6
CD44-238	ENST00000534296	FBF1	Q8TES7	1133 aa		5.05	□□□□□ -1.6
CD44-238	ENST00000534296	RNF208	Q9H0X6	261 aa		5.05	□□□□□ -1.6
CD44-238	ENST00000534296	TPSG1	Q9NRR2	321 aa		5.05	□□□□□ -1.6
CD44-238	ENST00000534296	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	5.05	□□□□□ -1.6
CD44-238	ENST00000534296	CYP11A1	P05108	521 aa		5.04	□□□□□ -1.6
CD44-238	ENST00000534296	H2AFB1	P0C5Y9	115 aa		5.04	□□□□□ -1.6
CD44-238	ENST00000534296	H2AFB2	P0C5Z0	115 aa		5.04	□□□□□ -1.6
CD44-238	ENST00000534296	ESRRA	P11474	423 aa	Predicted RBP	5.04	□□□□□ -1.6
CD44-238	ENST00000534296	XRCC5	P13010	732 aa	Known RBP	5.04	□□□□□ -1.6
CD44-238	ENST00000534296	GSTM4	Q03013	218 aa		5.04	□□□□□ -1.6
CD44-238	ENST00000534296	PTPN12	Q05209	780 aa	Known RBP	5.04	□□□□□ -1.6
CD44-238	ENST00000534296	ENOX2	Q16206	610 aa	Known RBP	5.04	□□□□□ -1.6
CD44-238	ENST00000534296	ANKRD34A	Q69YU3	496 aa		5.04	□□□□□ -1.6
CD44-238	ENST00000534296	PRPF40B	Q6NWY9	871 aa	Known RBP	5.04	□□□□□ -1.6
CD44-238	ENST00000534296	VN1R5	Q7Z5H4	357 aa		5.04	□□□□□ -1.6
CD44-238	ENST00000534296	KLHDC7B	Q96G42	594 aa		5.04	□□□□□ -1.6
CD44-238	ENST00000534296	RUSC1	Q9BVN2	902 aa		5.04	□□□□□ -1.6
CD44-238	ENST00000534296	USP26	Q9BXU7	913 aa		5.04	□□□□□ -1.6
CD44-238	ENST00000534296	METTL12	A8MUP2	240 aa		5.03	□□□□□ -1.6
CD44-238	ENST00000534296	ADAM23	O75077	832 aa		5.03	□□□□□ -1.6
CD44-238	ENST00000534296	IGHA2	P01877	340 aa		5.03	□□□□□ -1.6
CD44-238	ENST00000534296	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	5.03	□□□□□ -1.6
CD44-238	ENST00000534296	NUTM2G	Q5VZR2	741 aa		5.03	□□□□□ -1.6
CD44-238	ENST00000534296	DTHD1	Q6ZMT9	781 aa		5.03	□□□□□ -1.6
CD44-238	ENST00000534296	TCF12	Q99081	682 aa		5.03	□□□□□ -1.6
CD44-238	ENST00000534296	SRCIN1	Q9C0H9	1055 aa		5.03	□□□□□ -1.6
CD44-238	ENST00000534296	SEMA6B	Q9H3T3	888 aa		5.03	□□□□□ -1.6
CD44-238	ENST00000534296	CYP4F12	Q9HCS2	524 aa		5.03	□□□□□ -1.6
CD44-238	ENST00000534296	SPG7	Q9UQ90	795 aa		5.03	□□□□□ -1.6
CD44-238	ENST00000534296	TMEM238L	A0A1B0GVL6	79 aa		5.02	□□□□□ -1.61
CD44-238	ENST00000534296	SOX1	O00570	391 aa	Predicted RBP	5.02	□□□□□ -1.61
CD44-238	ENST00000534296	GIPC1	O14908	333 aa		5.02	□□□□□ -1.61
CD44-238	ENST00000534296	DHX15	O43143	795 aa	Known RBP	5.02	□□□□□ -1.61
CD44-238	ENST00000534296	GAS2	O43903	313 aa	Known RBP	5.02	□□□□□ -1.61
CD44-238	ENST00000534296	ITPKA	P23677	461 aa		5.02	□□□□□ -1.61
CD44-238	ENST00000534296	ITGAE	P38570	1179 aa		5.02	□□□□□ -1.61
CD44-238	ENST00000534296	GRIA4	P48058	902 aa		5.02	□□□□□ -1.61
CD44-238	ENST00000534296	PPP2R3A	Q06190	1150 aa		5.02	□□□□□ -1.61
CD44-238	ENST00000534296	FMR1	Q06787	632 aa	Known RBP eCLIP	5.02	□□□□□ -1.61
CD44-238	ENST00000534296	GRM2	Q14416	872 aa		5.02	□□□□□ -1.61
CD44-238	ENST00000534296	DSC3	Q14574	896 aa		5.02	□□□□□ -1.61
CD44-238	ENST00000534296		Q6ZS46	218 aa		5.02	□□□□□ -1.61
CD44-238	ENST00000534296	AGGF1	Q8N302	714 aa	eCLIP	5.02	□□□□□ -1.61
CD44-238	ENST00000534296	UBASH3B	Q8TF42	649 aa		5.02	□□□□□ -1.61
CD44-238	ENST00000534296	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	5.02	□□□□□ -1.61
CD44-238	ENST00000534296	UTP4	Q969X6	686 aa	Known RBP	5.02	□□□□□ -1.61
CD44-238	ENST00000534296	CORO1B	Q9BR76	489 aa		5.02	□□□□□ -1.61
CD44-238	ENST00000534296	BCL11A	Q9H165	835 aa		5.02	□□□□□ -1.61
CD44-238	ENST00000534296	ZNF576	Q9H609	170 aa		5.02	□□□□□ -1.61
CD44-238	ENST00000534296	GSC2	O15499	205 aa		5.01	□□□□□ -1.61
CD44-238	ENST00000534296	DDX3Y	O15523	660 aa	Known RBP	5.01	□□□□□ -1.61
CD44-238	ENST00000534296	DYRK3	O43781	588 aa		5.01	□□□□□ -1.61
CD44-238	ENST00000534296	ALX3	O95076	343 aa		5.01	□□□□□ -1.61
CD44-238	ENST00000534296	WISP1	O95388	367 aa		5.01	□□□□□ -1.61
CD44-238	ENST00000534296	B3GALT4	O96024	378 aa		5.01	□□□□□ -1.61
CD44-238	ENST00000534296	AP3B2	Q13367	1082 aa		5.01	□□□□□ -1.61
CD44-238	ENST00000534296	COL19A1	Q14993	1142 aa		5.01	□□□□□ -1.61
CD44-238	ENST00000534296	RSPO4	Q2I0M5	234 aa	Predicted RBP	5.01	□□□□□ -1.61
CD44-238	ENST00000534296	SPRED3	Q2MJR0	410 aa		5.01	□□□□□ -1.61
CD44-238	ENST00000534296	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	5.01	□□□□□ -1.61
CD44-238	ENST00000534296	ADAMTSL4	Q6UY14	1074 aa		5.01	□□□□□ -1.61
CD44-238	ENST00000534296	DZIP1L	Q8IYY4	767 aa	Known RBP	5.01	□□□□□ -1.61
CD44-238	ENST00000534296	EPS8L3	Q8TE67	593 aa	Known RBP	5.01	□□□□□ -1.61
CD44-238	ENST00000534296	MEGF10	Q96KG7	1140 aa		5.01	□□□□□ -1.61
CD44-238	ENST00000534296	FRMD6	Q96NE9	622 aa		5.01	□□□□□ -1.61
CD44-238	ENST00000534296	YIPF2	Q9BWQ6	316 aa		5.01	□□□□□ -1.61
CD44-238	ENST00000534296	ABCB6	Q9NP58	842 aa		5.01	□□□□□ -1.61
CD44-238	ENST00000534296	KCNK4	Q9NYG8	393 aa		5.01	□□□□□ -1.61
CD44-238	ENST00000534296	ZBTB7C	A1YPR0	619 aa		5	□□□□□ -1.61
CD44-238	ENST00000534296	MEGF11	A6BM72	1044 aa		5	□□□□□ -1.61

Retrieved 100 of 20,778 RNA–protein pairs in 53 ms