RNA–Protein interactions for RNA: ENST00000527823.5

USP48-212, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 554 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-212ENST00000527823 MAP2K2P36507 400 aa10.87□□□□□ -0.67
USP48-212ENST00000527823 EIF6P56537 245 aaKnown RBP10.87□□□□□ -0.67
USP48-212ENST00000527823 DGKZQ13574 1117 aa10.87□□□□□ -0.67
USP48-212ENST00000527823 NPM2Q86SE8 214 aaKnown RBP10.87□□□□□ -0.67
USP48-212ENST00000527823 GAS2L2Q8NHY3 880 aa10.87□□□□□ -0.67
USP48-212ENST00000527823 JDP2Q8WYK2 163 aa10.87□□□□□ -0.67
USP48-212ENST00000527823 KNSTRNQ9Y448 316 aa10.87□□□□□ -0.67
USP48-212ENST00000527823 IBTKQ9P2D0 1353 aaPredicted RBP10.87□□□□□ -0.67
USP48-212ENST00000527823 RFC5P40937 340 aa10.86□□□□□ -0.67
USP48-212ENST00000527823 HLFQ16534 295 aa10.86□□□□□ -0.67
USP48-212ENST00000527823 PPP2R2DQ66LE6 453 aa10.86□□□□□ -0.67
USP48-212ENST00000527823 NBPF10Q6P3W6 841 aaKnown RBP10.86□□□□□ -0.67
USP48-212ENST00000527823 USP50Q70EL3 339 aaPredicted RBP10.86□□□□□ -0.67
USP48-212ENST00000527823 NBPF15Q8N660 670 aa10.86□□□□□ -0.67
USP48-212ENST00000527823 SALL2Q9Y467 1007 aaPredicted RBP10.86□□□□□ -0.67
USP48-212ENST00000527823 TAF1P21675 1872 aa10.85□□□□□ -0.67
USP48-212ENST00000527823 BTBD11A6QL63 1104 aa10.85□□□□□ -0.67
USP48-212ENST00000527823 CELF2O95319 508 aaKnown RBP10.85□□□□□ -0.67
USP48-212ENST00000527823 ALDH1B1P30837 517 aa10.85□□□□□ -0.67
USP48-212ENST00000527823 EIF4G2P78344 907 aaKnown RBP eCLIP10.85□□□□□ -0.67
USP48-212ENST00000527823 CIAPIN1Q6FI81 312 aa10.85□□□□□ -0.67
USP48-212ENST00000527823 TPTE2Q6XPS3 522 aa10.85□□□□□ -0.67
USP48-212ENST00000527823 LARGE2Q8N3Y3 721 aa10.85□□□□□ -0.67
USP48-212ENST00000527823 NKX2-3Q8TAU0 364 aa10.85□□□□□ -0.67
USP48-212ENST00000527823 HHIPL1Q96JK4 782 aa10.85□□□□□ -0.67
USP48-212ENST00000527823 ZIC5Q96T25 663 aa10.85□□□□□ -0.67
USP48-212ENST00000527823 SPSB2Q99619 263 aa10.85□□□□□ -0.67
USP48-212ENST00000527823 USB1Q9BQ65 265 aaKnown RBP10.85□□□□□ -0.67
USP48-212ENST00000527823 GLIS2Q9BZE0 524 aaPredicted RBP10.85□□□□□ -0.67
USP48-212ENST00000527823 GPRC5DQ9NZD1 345 aa10.85□□□□□ -0.67
USP48-212ENST00000527823 POLR2AP24928 1970 aaKnown RBP10.85□□□□□ -0.67
USP48-212ENST00000527823 UBN2Q6ZU65 1347 aa10.84□□□□□ -0.67
USP48-212ENST00000527823 HTTP42858 3142 aa10.84□□□□□ -0.67
USP48-212ENST00000527823 CFAP99D6REC4 459 aa10.84□□□□□ -0.67
USP48-212ENST00000527823 SOX10P56693 466 aa10.84□□□□□ -0.67
USP48-212ENST00000527823 RETREG3Q86VR2 466 aa10.84□□□□□ -0.67
USP48-212ENST00000527823 PRR7Q8TB68 274 aa10.84□□□□□ -0.67
USP48-212ENST00000527823 TSC1Q92574 1164 aa10.84□□□□□ -0.67
USP48-212ENST00000527823 ADARB2Q9NS39 739 aaKnown RBP10.84□□□□□ -0.67
USP48-212ENST00000527823 NPC1L1Q9UHC9 1359 aa10.84□□□□□ -0.67
USP48-212ENST00000527823 MKI67P46013 3256 aaKnown RBP10.84□□□□□ -0.67
USP48-212ENST00000527823 KIF7Q2M1P5 1343 aa10.84□□□□□ -0.67
USP48-212ENST00000527823 SPDYE5A6NIY4 337 aa10.83□□□□□ -0.68
USP48-212ENST00000527823 PPEF1O14829 653 aaPredicted RBP10.83□□□□□ -0.68
USP48-212ENST00000527823 CC2D2BQ6DHV5 1058 aa10.83□□□□□ -0.68
USP48-212ENST00000527823 NIM1KQ8IY84 436 aa10.83□□□□□ -0.68
USP48-212ENST00000527823 U2SURPO15042 1029 aaKnown RBP10.82□□□□□ -0.68
USP48-212ENST00000527823 PPIP5K2O43314 1243 aa10.82□□□□□ -0.68
USP48-212ENST00000527823 SNRPA1P09661 255 aaKnown RBP10.82□□□□□ -0.68
USP48-212ENST00000527823 HOXA10P31260 410 aaPredicted RBP10.82□□□□□ -0.68
USP48-212ENST00000527823 KCNC4Q03721 635 aa10.82□□□□□ -0.68
USP48-212ENST00000527823 AOC3Q16853 763 aa10.82□□□□□ -0.68
USP48-212ENST00000527823 FAM160A2Q8N612 972 aaPredicted RBP10.82□□□□□ -0.68
USP48-212ENST00000527823 TRPM4Q8TD43 1214 aa10.82□□□□□ -0.68
USP48-212ENST00000527823 PHACTR3Q96KR7 559 aa10.82□□□□□ -0.68
USP48-212ENST00000527823 ZNF408Q9H9D4 720 aa10.82□□□□□ -0.68
USP48-212ENST00000527823 TIMELESSQ9UNS1 1208 aa10.82□□□□□ -0.68
USP48-212ENST00000527823 COL4A1P02462 1669 aa10.82□□□□□ -0.68
USP48-212ENST00000527823 CDHR2Q9BYE9 1310 aa10.82□□□□□ -0.68
USP48-212ENST00000527823 SCN9AQ15858 1988 aa10.81□□□□□ -0.68
USP48-212ENST00000527823 SHTN1A0MZ66 631 aa10.81□□□□□ -0.68
USP48-212ENST00000527823 AP1G2O75843 785 aa10.81□□□□□ -0.68
USP48-212ENST00000527823 GMPSP49915 693 aaPredicted RBP10.81□□□□□ -0.68
USP48-212ENST00000527823 RPGRQ92834 1020 aaKnown RBP10.81□□□□□ -0.68
USP48-212ENST00000527823 PSME4Q14997 1843 aa10.81□□□□□ -0.68
USP48-212ENST00000527823 BRCA2P51587 3418 aa10.81□□□□□ -0.68
USP48-212ENST00000527823 ADH1BP00325 375 aa10.8□□□□□ -0.68
USP48-212ENST00000527823 GTF2E1P29083 439 aaPredicted RBP10.8□□□□□ -0.68
USP48-212ENST00000527823 PRKAR2BP31323 418 aa10.8□□□□□ -0.68
USP48-212ENST00000527823 HIRAP54198 1017 aaPredicted RBP10.8□□□□□ -0.68
USP48-212ENST00000527823 CXCL9Q07325 125 aa10.8□□□□□ -0.68
USP48-212ENST00000527823 NOGQ13253 232 aa10.8□□□□□ -0.68
USP48-212ENST00000527823 CC2D1BQ5T0F9 858 aaKnown RBP10.8□□□□□ -0.68
USP48-212ENST00000527823 MCM10Q7L590 875 aa10.8□□□□□ -0.68
USP48-212ENST00000527823 PRDM9Q9NQV7 894 aa10.8□□□□□ -0.68
USP48-212ENST00000527823 PGAP2Q9UHJ9 254 aa10.8□□□□□ -0.68
USP48-212ENST00000527823 FAM155AB1AL88 458 aaPredicted RBP10.79□□□□□ -0.68
USP48-212ENST00000527823 TCERG1O14776 1098 aaKnown RBP10.79□□□□□ -0.68
USP48-212ENST00000527823 PER1O15534 1290 aaPredicted RBP10.79□□□□□ -0.68
USP48-212ENST00000527823 NTSR2O95665 410 aa10.79□□□□□ -0.68
USP48-212ENST00000527823 GPTP24298 496 aa10.79□□□□□ -0.68
USP48-212ENST00000527823 DLK2Q6UY11 383 aa10.79□□□□□ -0.68
USP48-212ENST00000527823 CRAMP1Q96RY5 1269 aa10.79□□□□□ -0.68
USP48-212ENST00000527823 NYXQ9GZU5 481 aa10.79□□□□□ -0.68
USP48-212ENST00000527823 ABCC4O15439 1325 aa10.79□□□□□ -0.68
USP48-212ENST00000527823 MAP3K15Q6ZN16 1313 aa10.79□□□□□ -0.68
USP48-212ENST00000527823 CENPFP49454 3210 aa10.79□□□□□ -0.68
USP48-212ENST00000527823 RBBP6Q7Z6E9 1792 aaKnown RBP10.78□□□□□ -0.68
USP48-212ENST00000527823 PAPPA2Q9BXP8 1791 aa10.78□□□□□ -0.68
USP48-212ENST00000527823 HUNKP57058 714 aa10.78□□□□□ -0.68
USP48-212ENST00000527823 CTDSPL2Q05D32 466 aa10.78□□□□□ -0.68
USP48-212ENST00000527823 DCTN1Q14203 1278 aa10.78□□□□□ -0.68
USP48-212ENST00000527823 TMEM259Q4ZIN3 620 aa10.78□□□□□ -0.68
USP48-212ENST00000527823 TTLL7Q6ZT98 887 aa10.78□□□□□ -0.68
USP48-212ENST00000527823 PLSCR2Q9NRY7 297 aa10.78□□□□□ -0.68
USP48-212ENST00000527823 SAGE1Q9NXZ1 904 aa10.78□□□□□ -0.68
USP48-212ENST00000527823 ZNRF3Q9ULT6 936 aa10.78□□□□□ -0.68
USP48-212ENST00000527823 ZNF646O15015 1829 aaPredicted RBP10.77□□□□□ -0.68
USP48-212ENST00000527823 SUSD4Q5VX71 490 aa10.77□□□□□ -0.69
USP48-212ENST00000527823 HELBQ8NG08 1087 aaPredicted RBP10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms