RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 MRPL18Q9H0U6 180 aaKnown RBP7.59□□□□□ -1.19
CD44-217ENST00000525348 DNAJC25Q9H1X3 360 aa7.59□□□□□ -1.19
CD44-217ENST00000525348 LIN7BQ9HAP6 207 aa7.59□□□□□ -1.19
CD44-217ENST00000525348 SEC31BQ9NQW1 1179 aa7.59□□□□□ -1.19
CD44-217ENST00000525348 SOX1O00570 391 aaPredicted RBP7.58□□□□□ -1.2
CD44-217ENST00000525348 TREHO43280 583 aa7.58□□□□□ -1.2
CD44-217ENST00000525348 CABP4P57796 275 aa7.58□□□□□ -1.2
CD44-217ENST00000525348 SUZ12Q15022 739 aaKnown RBP7.58□□□□□ -1.2
CD44-217ENST00000525348 FAM117BQ6P1L5 589 aa7.58□□□□□ -1.2
CD44-217ENST00000525348 PI16Q6UXB8 463 aa7.58□□□□□ -1.2
CD44-217ENST00000525348 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.58□□□□□ -1.2
CD44-217ENST00000525348 TMEM130Q8N3G9 435 aa7.58□□□□□ -1.2
CD44-217ENST00000525348 KLHL23Q8NBE8 558 aa7.58□□□□□ -1.2
CD44-217ENST00000525348 EPS8L3Q8TE67 593 aaKnown RBP7.58□□□□□ -1.2
CD44-217ENST00000525348 SLC7A3Q8WY07 619 aa7.58□□□□□ -1.2
CD44-217ENST00000525348 A0A096LPE4 126 aa7.57□□□□□ -1.2
CD44-217ENST00000525348 A0A1W2PPZ6 126 aa7.57□□□□□ -1.2
CD44-217ENST00000525348 KIAA1211Q6ZU35 1233 aa7.57□□□□□ -1.2
CD44-217ENST00000525348 WNT8BQ93098 351 aa7.57□□□□□ -1.2
CD44-217ENST00000525348 AKTIPQ9H8T0 292 aa7.57□□□□□ -1.2
CD44-217ENST00000525348 FAM177BA6PVY3 158 aa7.56□□□□□ -1.2
CD44-217ENST00000525348 K7ELQ4 463 aaPredicted RBP7.56□□□□□ -1.2
CD44-217ENST00000525348 ESRRAP11474 423 aaPredicted RBP7.56□□□□□ -1.2
CD44-217ENST00000525348 NLRP12P59046 1061 aa7.56□□□□□ -1.2
CD44-217ENST00000525348 IKBKEQ14164 716 aa7.56□□□□□ -1.2
CD44-217ENST00000525348 Q6ZS46 218 aa7.56□□□□□ -1.2
CD44-217ENST00000525348 ACAD11Q709F0 780 aa7.56□□□□□ -1.2
CD44-217ENST00000525348 GLIS3Q8NEA6 775 aa7.56□□□□□ -1.2
CD44-217ENST00000525348 ASB16Q96NS5 453 aa7.56□□□□□ -1.2
CD44-217ENST00000525348 SETDB2Q96T68 719 aa7.56□□□□□ -1.2
CD44-217ENST00000525348 OSGEPQ9NPF4 335 aa7.56□□□□□ -1.2
CD44-217ENST00000525348 PNMA6FA0A0J9YX94 578 aa7.55□□□□□ -1.2
CD44-217ENST00000525348 FMR1Q06787 632 aaKnown RBP eCLIP7.55□□□□□ -1.2
CD44-217ENST00000525348 GRM2Q14416 872 aa7.55□□□□□ -1.2
CD44-217ENST00000525348 ENOX2Q16206 610 aaKnown RBP7.55□□□□□ -1.2
CD44-217ENST00000525348 ZNF423Q2M1K9 1284 aa7.55□□□□□ -1.2
CD44-217ENST00000525348 EHD4Q9H223 541 aa7.55□□□□□ -1.2
CD44-217ENST00000525348 ABCB6Q9NP58 842 aa7.55□□□□□ -1.2
CD44-217ENST00000525348 PLCB3Q01970 1234 aa7.54□□□□□ -1.2
CD44-217ENST00000525348 C19orf57Q0VDD7 668 aa7.54□□□□□ -1.2
CD44-217ENST00000525348 DZIP1LQ8IYY4 767 aaKnown RBP7.54□□□□□ -1.2
CD44-217ENST00000525348 DCAF11Q8TEB1 546 aa7.54□□□□□ -1.2
CD44-217ENST00000525348 TP53INP1Q96A56 240 aa7.54□□□□□ -1.2
CD44-217ENST00000525348 PATL2C9JE40 543 aaKnown RBP7.53□□□□□ -1.2
CD44-217ENST00000525348 DYRK3O43781 588 aa7.53□□□□□ -1.2
CD44-217ENST00000525348 GADD45BO75293 160 aaPredicted RBP7.53□□□□□ -1.2
CD44-217ENST00000525348 ITPKAP23677 461 aa7.53□□□□□ -1.2
CD44-217ENST00000525348 PCDH1Q08174 1060 aa7.53□□□□□ -1.2
CD44-217ENST00000525348 DUOXA2Q1HG44 320 aa7.53□□□□□ -1.2
CD44-217ENST00000525348 PRPF40BQ6NWY9 871 aaKnown RBP7.53□□□□□ -1.2
CD44-217ENST00000525348 SND1Q7KZF4 910 aaKnown RBP eCLIP7.53□□□□□ -1.2
CD44-217ENST00000525348 UBL7Q96S82 380 aaPredicted RBP7.53□□□□□ -1.2
CD44-217ENST00000525348 NRSN2Q9GZP1 204 aa7.53□□□□□ -1.2
CD44-217ENST00000525348 CLEC4MQ9H2X3 399 aaPredicted RBP7.53□□□□□ -1.2
CD44-217ENST00000525348 SEMA6BQ9H3T3 888 aa7.53□□□□□ -1.2
CD44-217ENST00000525348 ZNF576Q9H609 170 aa7.53□□□□□ -1.2
CD44-217ENST00000525348 WWC3Q9ULE0 1092 aa7.53□□□□□ -1.2
CD44-217ENST00000525348 DLGAP3O95886 979 aa7.52□□□□□ -1.21
CD44-217ENST00000525348 GLB1P16278 677 aa7.52□□□□□ -1.21
CD44-217ENST00000525348 ZSCAN29Q8IWY8 852 aaPredicted RBP7.52□□□□□ -1.21
CD44-217ENST00000525348 SOX17Q9H6I2 414 aaPredicted RBP7.52□□□□□ -1.21
CD44-217ENST00000525348 TMEM238LA0A1B0GVL6 79 aa7.51□□□□□ -1.21
CD44-217ENST00000525348 MAPK8P45983 427 aa7.51□□□□□ -1.21
CD44-217ENST00000525348 LOC100289279A0A1B0GTE1 492 aa7.5□□□□□ -1.21
CD44-217ENST00000525348 P4HBP07237 508 aaKnown RBP7.5□□□□□ -1.21
CD44-217ENST00000525348 CTSBP07858 339 aa7.5□□□□□ -1.21
CD44-217ENST00000525348 H2AFB1P0C5Y9 115 aa7.5□□□□□ -1.21
CD44-217ENST00000525348 H2AFB2P0C5Z0 115 aa7.5□□□□□ -1.21
CD44-217ENST00000525348 ARL4DP49703 201 aa7.5□□□□□ -1.21
CD44-217ENST00000525348 GSTM4Q03013 218 aa7.5□□□□□ -1.21
CD44-217ENST00000525348 FAAP100Q0VG06 881 aa7.5□□□□□ -1.21
CD44-217ENST00000525348 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.5□□□□□ -1.21
CD44-217ENST00000525348 TRIM56Q9BRZ2 755 aaKnown RBP7.5□□□□□ -1.21
CD44-217ENST00000525348 USP26Q9BXU7 913 aa7.5□□□□□ -1.21
CD44-217ENST00000525348 BCO2Q9BYV7 579 aa7.5□□□□□ -1.21
CD44-217ENST00000525348 B3GALT4O96024 378 aa7.49□□□□□ -1.21
CD44-217ENST00000525348 ARMC10Q8N2F6 343 aa7.49□□□□□ -1.21
CD44-217ENST00000525348 ECEL1O95672 775 aa7.48□□□□□ -1.21
CD44-217ENST00000525348 PTPN12Q05209 780 aaKnown RBP7.48□□□□□ -1.21
CD44-217ENST00000525348 NXPE4Q6UWF7 544 aa7.48□□□□□ -1.21
CD44-217ENST00000525348 FAM46AQ96IP4 442 aaKnown RBP7.48□□□□□ -1.21
CD44-217ENST00000525348 RUSC1Q9BVN2 902 aa7.48□□□□□ -1.21
CD44-217ENST00000525348 NLRP2Q9NX02 1062 aa7.48□□□□□ -1.21
CD44-217ENST00000525348 PREPP48147 710 aa7.47□□□□□ -1.21
CD44-217ENST00000525348 FCGRTP55899 365 aa7.47□□□□□ -1.21
CD44-217ENST00000525348 PRR23CQ6ZRP0 262 aa7.47□□□□□ -1.21
CD44-217ENST00000525348 TMPRSS13Q9BYE2 586 aa7.47□□□□□ -1.21
CD44-217ENST00000525348 RNF208Q9H0X6 261 aa7.47□□□□□ -1.21
CD44-217ENST00000525348 TRAK1Q9UPV9 953 aa7.47□□□□□ -1.21
CD44-217ENST00000525348 MEGF11A6BM72 1044 aa7.46□□□□□ -1.22
CD44-217ENST00000525348 ZNF157P51786 506 aaPredicted RBP7.46□□□□□ -1.22
CD44-217ENST00000525348 PRSS36Q5K4E3 855 aa7.46□□□□□ -1.22
CD44-217ENST00000525348 C3orf58Q8NDZ4 430 aa7.46□□□□□ -1.22
CD44-217ENST00000525348 OSBPL7Q9BZF2 842 aa7.46□□□□□ -1.22
CD44-217ENST00000525348 ANKRD33BA6NCL7 494 aa7.45□□□□□ -1.22
CD44-217ENST00000525348 MAOBP27338 520 aa7.45□□□□□ -1.22
CD44-217ENST00000525348 DNAJC14Q6Y2X3 702 aaPredicted RBP7.45□□□□□ -1.22
CD44-217ENST00000525348 FBF1Q8TES7 1133 aa7.45□□□□□ -1.22
CD44-217ENST00000525348 CEP41Q9BYV8 373 aa7.45□□□□□ -1.22
CD44-217ENST00000525348 RNF19AQ9NV58 838 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms