RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-212	ENST00000524922	UTP4	Q969X6	686 aa	Known RBP	3.73	□□□□□ -1.81
CD44-212	ENST00000524922	FAM83C	Q9BQN1	747 aa		3.73	□□□□□ -1.81
CD44-212	ENST00000524922	CEP41	Q9BYV8	373 aa		3.73	□□□□□ -1.81
CD44-212	ENST00000524922	LOC100289279	A0A1B0GTE1	492 aa		3.72	□□□□□ -1.81
CD44-212	ENST00000524922	GSC2	O15499	205 aa		3.72	□□□□□ -1.81
CD44-212	ENST00000524922	NLRP12	P59046	1061 aa		3.72	□□□□□ -1.81
CD44-212	ENST00000524922	ANKRD34A	Q69YU3	496 aa		3.72	□□□□□ -1.81
CD44-212	ENST00000524922	DTX1	Q86Y01	620 aa		3.72	□□□□□ -1.81
CD44-212	ENST00000524922	CLEC10A	Q8IUN9	316 aa		3.72	□□□□□ -1.81
CD44-212	ENST00000524922	SHISA5	Q8N114	240 aa		3.72	□□□□□ -1.81
CD44-212	ENST00000524922	OSMR	Q99650	979 aa		3.72	□□□□□ -1.81
CD44-212	ENST00000524922	DBNDD2	Q9BQY9	259 aa		3.72	□□□□□ -1.81
CD44-212	ENST00000524922	SOX17	Q9H6I2	414 aa	Predicted RBP	3.72	□□□□□ -1.81
CD44-212	ENST00000524922	SUGCT	Q9HAC7	445 aa		3.72	□□□□□ -1.81
CD44-212	ENST00000524922	PCMTD2	Q9NV79	361 aa		3.72	□□□□□ -1.81
CD44-212	ENST00000524922	CCDC87	Q9NVE4	849 aa		3.72	□□□□□ -1.81
CD44-212	ENST00000524922	OAS3	Q9Y6K5	1087 aa	Known RBP	3.72	□□□□□ -1.81
CD44-212	ENST00000524922	METTL12	A8MUP2	240 aa		3.71	□□□□□ -1.82
CD44-212	ENST00000524922	PPP1R15A	O75807	674 aa	Predicted RBP	3.71	□□□□□ -1.82
CD44-212	ENST00000524922	CTSB	P07858	339 aa		3.71	□□□□□ -1.82
CD44-212	ENST00000524922	ESRRA	P11474	423 aa	Predicted RBP	3.71	□□□□□ -1.82
CD44-212	ENST00000524922	BMP3	P12645	472 aa		3.71	□□□□□ -1.82
CD44-212	ENST00000524922	C19orf57	Q0VDD7	668 aa		3.71	□□□□□ -1.82
CD44-212	ENST00000524922	C8orf34	Q49A92	452 aa		3.71	□□□□□ -1.82
CD44-212	ENST00000524922	SNX29	Q8TEQ0	813 aa		3.71	□□□□□ -1.82
CD44-212	ENST00000524922	BSND	Q8WZ55	320 aa		3.71	□□□□□ -1.82
CD44-212	ENST00000524922	FMNL2	Q96PY5	1086 aa		3.71	□□□□□ -1.82
CD44-212	ENST00000524922	TCF12	Q99081	682 aa		3.71	□□□□□ -1.82
CD44-212	ENST00000524922	RNF208	Q9H0X6	261 aa		3.71	□□□□□ -1.82
CD44-212	ENST00000524922	ZFYVE28	Q9HCC9	887 aa		3.71	□□□□□ -1.82
CD44-212	ENST00000524922	COBL	O75128	1261 aa		3.7	□□□□□ -1.82
CD44-212	ENST00000524922	HOXA10	P31260	410 aa	Predicted RBP	3.7	□□□□□ -1.82
CD44-212	ENST00000524922	FKBP4	Q02790	459 aa	Known RBP eCLIP	3.7	□□□□□ -1.82
CD44-212	ENST00000524922	SF3B2	Q13435	895 aa	Known RBP	3.7	□□□□□ -1.82
CD44-212	ENST00000524922	ALKBH2	Q6NS38	261 aa		3.7	□□□□□ -1.82
CD44-212	ENST00000524922	FAM117B	Q6P1L5	589 aa		3.7	□□□□□ -1.82
CD44-212	ENST00000524922	BEND4	Q6ZU67	534 aa		3.7	□□□□□ -1.82
CD44-212	ENST00000524922	SMG8	Q8ND04	991 aa	Known RBP	3.7	□□□□□ -1.82
CD44-212	ENST00000524922	SHKBP1	Q8TBC3	707 aa		3.7	□□□□□ -1.82
CD44-212	ENST00000524922	GATA6	Q92908	595 aa		3.7	□□□□□ -1.82
CD44-212	ENST00000524922	PMEPA1	Q969W9	287 aa		3.7	□□□□□ -1.82
CD44-212	ENST00000524922	RUSC1	Q9BVN2	902 aa		3.7	□□□□□ -1.82
CD44-212	ENST00000524922	HIF3A	Q9Y2N7	669 aa		3.7	□□□□□ -1.82
CD44-212	ENST00000524922	PHACTR2	O75167	634 aa		3.69	□□□□□ -1.82
CD44-212	ENST00000524922	FAM13A	O94988	1023 aa		3.69	□□□□□ -1.82
CD44-212	ENST00000524922	F13B	P05160	661 aa		3.69	□□□□□ -1.82
CD44-212	ENST00000524922	EDN3	P14138	238 aa		3.69	□□□□□ -1.82
CD44-212	ENST00000524922	GRIA4	P48058	902 aa		3.69	□□□□□ -1.82
CD44-212	ENST00000524922	GP2	P55259	537 aa	Known RBP	3.69	□□□□□ -1.82
CD44-212	ENST00000524922	CABP4	P57796	275 aa		3.69	□□□□□ -1.82
CD44-212	ENST00000524922	ARHGAP4	P98171	946 aa		3.69	□□□□□ -1.82
CD44-212	ENST00000524922	ZNF211	Q13398	564 aa	Predicted RBP	3.69	□□□□□ -1.82
CD44-212	ENST00000524922	IKBKE	Q14164	716 aa		3.69	□□□□□ -1.82
CD44-212	ENST00000524922	MSMP	Q1L6U9	139 aa		3.69	□□□□□ -1.82
CD44-212	ENST00000524922	ZNF423	Q2M1K9	1284 aa		3.69	□□□□□ -1.82
CD44-212	ENST00000524922	SGO2	Q562F6	1265 aa		3.69	□□□□□ -1.82
CD44-212	ENST00000524922	CCNJL	Q8IV13	435 aa		3.69	□□□□□ -1.82
CD44-212	ENST00000524922	C2CD4A	Q8NCU7	369 aa	Predicted RBP	3.69	□□□□□ -1.82
CD44-212	ENST00000524922	SLC7A3	Q8WY07	619 aa		3.69	□□□□□ -1.82
CD44-212	ENST00000524922	EZH1	Q92800	747 aa	Predicted RBP	3.69	□□□□□ -1.82
CD44-212	ENST00000524922	TRIM56	Q9BRZ2	755 aa	Known RBP	3.69	□□□□□ -1.82
CD44-212	ENST00000524922		A0A1W2PP55	124 aa		3.68	□□□□□ -1.82
CD44-212	ENST00000524922	ICMT	O60725	284 aa		3.68	□□□□□ -1.82
CD44-212	ENST00000524922	POLR3D	P05423	398 aa	Predicted RBP	3.68	□□□□□ -1.82
CD44-212	ENST00000524922	DRD2	P14416	443 aa		3.68	□□□□□ -1.82
CD44-212	ENST00000524922	PCSK2	P16519	638 aa		3.68	□□□□□ -1.82
CD44-212	ENST00000524922	MAP4	P27816	1152 aa	Known RBP	3.68	□□□□□ -1.82
CD44-212	ENST00000524922	USP5	P45974	858 aa		3.68	□□□□□ -1.82
CD44-212	ENST00000524922	EHHADH	Q08426	723 aa		3.68	□□□□□ -1.82
CD44-212	ENST00000524922	COL19A1	Q14993	1142 aa		3.68	□□□□□ -1.82
CD44-212	ENST00000524922	SPRED3	Q2MJR0	410 aa		3.68	□□□□□ -1.82
CD44-212	ENST00000524922	USPL1	Q5W0Q7	1092 aa		3.68	□□□□□ -1.82
CD44-212	ENST00000524922	CDPF1	Q6NVV7	123 aa		3.68	□□□□□ -1.82
CD44-212	ENST00000524922	INTS5	Q6P9B9	1019 aa	Known RBP	3.68	□□□□□ -1.82
CD44-212	ENST00000524922	GALNT12	Q8IXK2	581 aa		3.68	□□□□□ -1.82
CD44-212	ENST00000524922	GSX1	Q9H4S2	264 aa	Predicted RBP	3.68	□□□□□ -1.82
CD44-212	ENST00000524922	ANO2	Q9NQ90	1003 aa		3.68	□□□□□ -1.82
CD44-212	ENST00000524922	EGFL7	Q9UHF1	273 aa		3.68	□□□□□ -1.82
CD44-212	ENST00000524922	AMOTL2	Q9Y2J4	779 aa		3.68	□□□□□ -1.82
CD44-212	ENST00000524922	GTF3C3	Q9Y5Q9	886 aa		3.68	□□□□□ -1.82
CD44-212	ENST00000524922	ECEL1	O95672	775 aa		3.67	□□□□□ -1.82
CD44-212	ENST00000524922	ADM	P35318	185 aa		3.67	□□□□□ -1.82
CD44-212	ENST00000524922	SEZ6L2	Q6UXD5	910 aa		3.67	□□□□□ -1.82
CD44-212	ENST00000524922	FAM129B	Q96TA1	746 aa		3.67	□□□□□ -1.82
CD44-212	ENST00000524922	GOLGA2P5	Q9HBQ8	144 aa		3.67	□□□□□ -1.82
CD44-212	ENST00000524922	ADGRE2	Q9UHX3	823 aa		3.67	□□□□□ -1.82
CD44-212	ENST00000524922		A0A096LPE4	126 aa		3.66	□□□□□ -1.82
CD44-212	ENST00000524922	KRTAP4-8	A0A0G2JLE6	195 aa		3.66	□□□□□ -1.82
CD44-212	ENST00000524922		A0A1W2PPZ6	126 aa		3.66	□□□□□ -1.82
CD44-212	ENST00000524922	WDR64	B1ANS9	1081 aa		3.66	□□□□□ -1.82
CD44-212	ENST00000524922	B3GALT4	O96024	378 aa		3.66	□□□□□ -1.82
CD44-212	ENST00000524922	PRNP	P04156	253 aa		3.66	□□□□□ -1.82
CD44-212	ENST00000524922	TAL1	P17542	331 aa	Predicted RBP	3.66	□□□□□ -1.82
CD44-212	ENST00000524922	ITPKA	P23677	461 aa		3.66	□□□□□ -1.82
CD44-212	ENST00000524922	SERPINB4	P48594	390 aa		3.66	□□□□□ -1.82
CD44-212	ENST00000524922	SOX4	Q06945	474 aa	Predicted RBP	3.66	□□□□□ -1.82
CD44-212	ENST00000524922	EXOSC6	Q5RKV6	272 aa	Known RBP	3.66	□□□□□ -1.82
CD44-212	ENST00000524922	KIAA0319	Q5VV43	1072 aa		3.66	□□□□□ -1.82
CD44-212	ENST00000524922	FDX2	Q6P4F2	183 aa		3.66	□□□□□ -1.82
CD44-212	ENST00000524922	WFDC3	Q8IUB2	231 aa		3.66	□□□□□ -1.82

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