RNA–Protein interactions for RNA: ENST00000517578.1

HMGB1P19-201, Transcript of high mobility group box 1 pseudogene 19, humanhuman

BASIC

Gene HMGB1P19, Length 577 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P19-201ENST00000517578 CCDC172P0C7W6 258 aa5.87□□□□□ -1.47
HMGB1P19-201ENST00000517578 MCM4P33991 863 aa5.87□□□□□ -1.47
HMGB1P19-201ENST00000517578 GTF2F1P35269 517 aaKnown RBP eCLIP5.87□□□□□ -1.47
HMGB1P19-201ENST00000517578 ARSDP51689 593 aa5.87□□□□□ -1.47
HMGB1P19-201ENST00000517578 ANAPC15P60006 121 aa5.87□□□□□ -1.47
HMGB1P19-201ENST00000517578 MLLT1Q03111 559 aaPredicted RBP5.87□□□□□ -1.47
HMGB1P19-201ENST00000517578 PDE3BQ13370 1112 aa5.87□□□□□ -1.47
HMGB1P19-201ENST00000517578 ZKSCAN8Q15776 578 aaPredicted RBP5.87□□□□□ -1.47
HMGB1P19-201ENST00000517578 SWI5Q1ZZU3 235 aa5.87□□□□□ -1.47
HMGB1P19-201ENST00000517578 MYRIPQ8NFW9 859 aa5.87□□□□□ -1.47
HMGB1P19-201ENST00000517578 RSF1Q96T23 1441 aaPredicted RBP5.87□□□□□ -1.47
HMGB1P19-201ENST00000517578 FOXO3O43524 673 aa5.86□□□□□ -1.47
HMGB1P19-201ENST00000517578 SASH3O75995 380 aa5.86□□□□□ -1.47
HMGB1P19-201ENST00000517578 MICAL2O94851 1124 aa5.86□□□□□ -1.47
HMGB1P19-201ENST00000517578 RARAP10276 462 aa5.86□□□□□ -1.47
HMGB1P19-201ENST00000517578 GTF2A1P52655 376 aaPredicted RBP5.86□□□□□ -1.47
HMGB1P19-201ENST00000517578 GPLD1P80108 840 aa5.86□□□□□ -1.47
HMGB1P19-201ENST00000517578 MAP2K1Q02750 393 aaPredicted RBP5.86□□□□□ -1.47
HMGB1P19-201ENST00000517578 FAM69CQ0P6D2 419 aa5.86□□□□□ -1.47
HMGB1P19-201ENST00000517578 TRDNQ13061 729 aa5.86□□□□□ -1.47
HMGB1P19-201ENST00000517578 OS9Q13438 667 aaPredicted RBP5.86□□□□□ -1.47
HMGB1P19-201ENST00000517578 PCSK7Q16549 785 aa5.86□□□□□ -1.47
HMGB1P19-201ENST00000517578 FBXO11Q86XK2 927 aa5.86□□□□□ -1.47
HMGB1P19-201ENST00000517578 DTWD1Q8N5C7 304 aa5.86□□□□□ -1.47
HMGB1P19-201ENST00000517578 TTC9Q92623 222 aa5.86□□□□□ -1.47
HMGB1P19-201ENST00000517578 MYO19Q96H55 970 aa5.86□□□□□ -1.47
HMGB1P19-201ENST00000517578 MKNK1Q9BUB5 465 aa5.86□□□□□ -1.47
HMGB1P19-201ENST00000517578 C11orf16Q9NQ32 467 aa5.86□□□□□ -1.47
HMGB1P19-201ENST00000517578 DIAPH3Q9NSV4 1193 aa5.86□□□□□ -1.47
HMGB1P19-201ENST00000517578 CHMP5Q9NZZ3 219 aa5.86□□□□□ -1.47
HMGB1P19-201ENST00000517578 CCDC39Q9UFE4 941 aa5.86□□□□□ -1.47
HMGB1P19-201ENST00000517578 LRFN2Q9ULH4 789 aa5.86□□□□□ -1.47
HMGB1P19-201ENST00000517578 RAD50Q92878 1312 aa5.85□□□□□ -1.47
HMGB1P19-201ENST00000517578 GOLIM4O00461 696 aa5.85□□□□□ -1.47
HMGB1P19-201ENST00000517578 OPLAHO14841 1288 aa5.85□□□□□ -1.47
HMGB1P19-201ENST00000517578 NRDCO43847 1150 aa5.85□□□□□ -1.47
HMGB1P19-201ENST00000517578 DEAF1O75398 565 aaPredicted RBP5.85□□□□□ -1.47
HMGB1P19-201ENST00000517578 NEFHP12036 1026 aa5.85□□□□□ -1.47
HMGB1P19-201ENST00000517578 NOS3P29474 1203 aa5.85□□□□□ -1.47
HMGB1P19-201ENST00000517578 CHAF1AQ13111 956 aaPredicted RBP5.85□□□□□ -1.47
HMGB1P19-201ENST00000517578 FKBP5Q13451 457 aaPredicted RBP5.85□□□□□ -1.47
HMGB1P19-201ENST00000517578 LRP8Q14114 963 aa5.85□□□□□ -1.47
HMGB1P19-201ENST00000517578 C11orf91Q3C1V1 193 aa5.85□□□□□ -1.47
HMGB1P19-201ENST00000517578 NOM1Q5C9Z4 860 aaKnown RBP5.85□□□□□ -1.47
HMGB1P19-201ENST00000517578 ELMSAN1Q6PJG2 1045 aa5.85□□□□□ -1.47
HMGB1P19-201ENST00000517578 CENPQQ7L2Z9 268 aaPredicted RBP5.85□□□□□ -1.47
HMGB1P19-201ENST00000517578 WFDC12Q8WWY7 111 aa5.85□□□□□ -1.47
HMGB1P19-201ENST00000517578 GBP4Q96PP9 640 aa5.85□□□□□ -1.47
HMGB1P19-201ENST00000517578 PAIP2Q9BPZ3 127 aaKnown RBP5.85□□□□□ -1.47
HMGB1P19-201ENST00000517578 USP20Q9Y2K6 914 aa5.85□□□□□ -1.47
HMGB1P19-201ENST00000517578 KTN1Q86UP2 1357 aaKnown RBP5.84□□□□□ -1.47
HMGB1P19-201ENST00000517578 E9PSI1 815 aa5.84□□□□□ -1.47
HMGB1P19-201ENST00000517578 ZNF853P0CG23 659 aa5.84□□□□□ -1.47
HMGB1P19-201ENST00000517578 LIG1P18858 919 aa5.84□□□□□ -1.47
HMGB1P19-201ENST00000517578 IREB2P48200 963 aaKnown RBP5.84□□□□□ -1.47
HMGB1P19-201ENST00000517578 CBX1P83916 185 aa5.84□□□□□ -1.47
HMGB1P19-201ENST00000517578 SYCP1Q15431 976 aa5.84□□□□□ -1.47
HMGB1P19-201ENST00000517578 NBPF6Q5VWK0 638 aa5.84□□□□□ -1.47
HMGB1P19-201ENST00000517578 HFE2Q6ZVN8 426 aa5.84□□□□□ -1.47
HMGB1P19-201ENST00000517578 CCDC91Q7Z6B0 441 aa5.84□□□□□ -1.47
HMGB1P19-201ENST00000517578 NBPF5PQ86XG9 351 aaPredicted RBP5.84□□□□□ -1.47
HMGB1P19-201ENST00000517578 WFDC8Q8IUA0 241 aa5.84□□□□□ -1.47
HMGB1P19-201ENST00000517578 NBPF4Q96M43 638 aa5.84□□□□□ -1.47
HMGB1P19-201ENST00000517578 FAM210AQ96ND0 272 aa5.84□□□□□ -1.47
HMGB1P19-201ENST00000517578 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.84□□□□□ -1.47
HMGB1P19-201ENST00000517578 EGFRP00533 1210 aa5.83□□□□□ -1.48
HMGB1P19-201ENST00000517578 HSPA5P11021 654 aaKnown RBP5.83□□□□□ -1.48
HMGB1P19-201ENST00000517578 NASPP49321 788 aaPredicted RBP5.83□□□□□ -1.48
HMGB1P19-201ENST00000517578 NRLP54845 237 aa5.83□□□□□ -1.48
HMGB1P19-201ENST00000517578 OCLNQ16625 522 aa5.83□□□□□ -1.48
HMGB1P19-201ENST00000517578 OTUD6BQ8N6M0 293 aa5.83□□□□□ -1.48
HMGB1P19-201ENST00000517578 MEGF10Q96KG7 1140 aa5.83□□□□□ -1.48
HMGB1P19-201ENST00000517578 TACO1Q9BSH4 297 aaKnown RBP5.83□□□□□ -1.48
HMGB1P19-201ENST00000517578 SMG9Q9H0W8 520 aaKnown RBP5.83□□□□□ -1.48
HMGB1P19-201ENST00000517578 MRS2Q9HD23 443 aa5.83□□□□□ -1.48
HMGB1P19-201ENST00000517578 SLC52A1Q9NWF4 448 aa5.83□□□□□ -1.48
HMGB1P19-201ENST00000517578 DONSONQ9NYP3 566 aa5.83□□□□□ -1.48
HMGB1P19-201ENST00000517578 CWC15Q9P013 229 aaKnown RBP5.83□□□□□ -1.48
HMGB1P19-201ENST00000517578 ZKSCAN5Q9Y2L8 839 aa5.83□□□□□ -1.48
HMGB1P19-201ENST00000517578 RTCBQ9Y3I0 505 aaKnown RBP5.83□□□□□ -1.48
HMGB1P19-201ENST00000517578 VPS8Q8N3P4 1428 aa5.82□□□□□ -1.48
HMGB1P19-201ENST00000517578 CARNS1A5YM72 827 aa5.82□□□□□ -1.48
HMGB1P19-201ENST00000517578 HYAL3O43820 417 aaPredicted RBP5.82□□□□□ -1.48
HMGB1P19-201ENST00000517578 HSP90AB1P08238 724 aaKnown RBP5.82□□□□□ -1.48
HMGB1P19-201ENST00000517578 ATP2B4P23634 1241 aa5.82□□□□□ -1.48
HMGB1P19-201ENST00000517578 RRP1P56182 461 aaKnown RBP5.82□□□□□ -1.48
HMGB1P19-201ENST00000517578 NAA30Q147X3 362 aaPredicted RBP5.82□□□□□ -1.48
HMGB1P19-201ENST00000517578 SETDB1Q15047 1291 aa5.82□□□□□ -1.48
HMGB1P19-201ENST00000517578 IGF2-ASQ6U949 168 aa5.82□□□□□ -1.48
HMGB1P19-201ENST00000517578 CAPN12Q6ZSI9 719 aa5.82□□□□□ -1.48
HMGB1P19-201ENST00000517578 FAM43BQ6ZT52 329 aaPredicted RBP5.82□□□□□ -1.48
HMGB1P19-201ENST00000517578 AEBP1Q8IUX7 1158 aa5.82□□□□□ -1.48
HMGB1P19-201ENST00000517578 CLP1Q92989 425 aaKnown RBP5.82□□□□□ -1.48
HMGB1P19-201ENST00000517578 PANK2Q9BZ23 570 aa5.82□□□□□ -1.48
HMGB1P19-201ENST00000517578 SLKQ9H2G2 1235 aaPredicted RBP5.82□□□□□ -1.48
HMGB1P19-201ENST00000517578 RASSF4Q9H2L5 321 aa5.82□□□□□ -1.48
HMGB1P19-201ENST00000517578 DEF6Q9H4E7 631 aa5.82□□□□□ -1.48
HMGB1P19-201ENST00000517578 MED4Q9NPJ6 270 aa5.82□□□□□ -1.48
HMGB1P19-201ENST00000517578 TLR7Q9NYK1 1049 aaKnown RBP5.82□□□□□ -1.48
HMGB1P19-201ENST00000517578 CXXC1Q9P0U4 656 aaPredicted RBP5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms