RNA–Protein interactions for RNA: ENST00000514469.1

HMGXB3-205, Transcript of HMG-box containing 3, human

TSL 5

Gene HMGXB3, Length 975 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGXB3-205	ENST00000514469	NOB1	Q9ULX3	412 aa	Known RBP	13.14	□□□□□ -0.31
HMGXB3-205	ENST00000514469	FAM205A	Q6ZU69	1335 aa		13.13	□□□□□ -0.31
HMGXB3-205	ENST00000514469	KIF16B	Q96L93	1317 aa		13.13	□□□□□ -0.31
HMGXB3-205	ENST00000514469	MTMR14	Q8NCE2	650 aa		13.13	□□□□□ -0.31
HMGXB3-205	ENST00000514469	TDRD7	Q8NHU6	1098 aa	Known RBP	13.13	□□□□□ -0.31
HMGXB3-205	ENST00000514469	BEGAIN	Q9BUH8	593 aa		13.13	□□□□□ -0.31
HMGXB3-205	ENST00000514469	API5	Q9BZZ5	524 aa	Known RBP	13.13	□□□□□ -0.31
HMGXB3-205	ENST00000514469	SCAF8	Q9UPN6	1271 aa	Known RBP	13.13	□□□□□ -0.31
HMGXB3-205	ENST00000514469	ECM29	Q5VYK3	1845 aa		13.12	□□□□□ -0.31
HMGXB3-205	ENST00000514469	CA12	O43570	354 aa		13.12	□□□□□ -0.31
HMGXB3-205	ENST00000514469	SLC10A3	P09131	477 aa		13.12	□□□□□ -0.31
HMGXB3-205	ENST00000514469	GYG1	P46976	350 aa		13.12	□□□□□ -0.31
HMGXB3-205	ENST00000514469	RFX5	P48382	616 aa	Predicted RBP	13.12	□□□□□ -0.31
HMGXB3-205	ENST00000514469	METTL24	Q5JXM2	366 aa		13.12	□□□□□ -0.31
HMGXB3-205	ENST00000514469	APOBEC3F	Q8IUX4	373 aa	Known RBP	13.12	□□□□□ -0.31
HMGXB3-205	ENST00000514469	KLHDC4	Q8TBB5	520 aa		13.12	□□□□□ -0.31
HMGXB3-205	ENST00000514469	CCDC102A	Q96A19	550 aa		13.12	□□□□□ -0.31
HMGXB3-205	ENST00000514469	FAM84B	Q96KN1	310 aa	Predicted RBP	13.12	□□□□□ -0.31
HMGXB3-205	ENST00000514469	ZIC5	Q96T25	663 aa		13.12	□□□□□ -0.31
HMGXB3-205	ENST00000514469	JAG2	Q9Y219	1238 aa		13.12	□□□□□ -0.31
HMGXB3-205	ENST00000514469	POLR2A	P24928	1970 aa	Known RBP	13.12	□□□□□ -0.31
HMGXB3-205	ENST00000514469	PDE8B	O95263	885 aa		13.11	□□□□□ -0.31
HMGXB3-205	ENST00000514469	HIBADH	P31937	336 aa	Known RBP	13.11	□□□□□ -0.31
HMGXB3-205	ENST00000514469	ZNF157	P51786	506 aa	Predicted RBP	13.11	□□□□□ -0.31
HMGXB3-205	ENST00000514469	DLGAP5	Q15398	846 aa		13.11	□□□□□ -0.31
HMGXB3-205	ENST00000514469	ARHGAP45	Q92619	1136 aa		13.11	□□□□□ -0.31
HMGXB3-205	ENST00000514469	SPDYE2B	A6NHP3	402 aa		13.1	□□□□□ -0.31
HMGXB3-205	ENST00000514469		F8W031	263 aa	Predicted RBP	13.1	□□□□□ -0.31
HMGXB3-205	ENST00000514469	UBTFL1	P0CB47	393 aa	Predicted RBP	13.1	□□□□□ -0.31
HMGXB3-205	ENST00000514469	SPDYE6	P0CI01	402 aa		13.1	□□□□□ -0.31
HMGXB3-205	ENST00000514469	PTPN12	Q05209	780 aa	Known RBP	13.1	□□□□□ -0.31
HMGXB3-205	ENST00000514469	CFAP100	Q494V2	611 aa		13.1	□□□□□ -0.31
HMGXB3-205	ENST00000514469	PRAMEF18	Q5VWM3	479 aa		13.1	□□□□□ -0.31
HMGXB3-205	ENST00000514469	FBXO33	Q7Z6M2	555 aa		13.1	□□□□□ -0.31
HMGXB3-205	ENST00000514469	RASAL3	Q86YV0	1011 aa		13.1	□□□□□ -0.31
HMGXB3-205	ENST00000514469	MIER1	Q8N108	512 aa		13.1	□□□□□ -0.31
HMGXB3-205	ENST00000514469	PCDHAC2	Q9Y5I4	1007 aa		13.1	□□□□□ -0.31
HMGXB3-205	ENST00000514469	SSC5D	A1L4H1	1573 aa		13.1	□□□□□ -0.31
HMGXB3-205	ENST00000514469	EYA2	O00167	538 aa		13.09	□□□□□ -0.31
HMGXB3-205	ENST00000514469	FGFR2	P21802	821 aa		13.09	□□□□□ -0.31
HMGXB3-205	ENST00000514469	PUM3	Q15397	648 aa	Known RBP	13.09	□□□□□ -0.31
HMGXB3-205	ENST00000514469	MFSD14B	Q5SR56	506 aa		13.09	□□□□□ -0.31
HMGXB3-205	ENST00000514469	DIEXF	Q68CQ4	756 aa	Known RBP	13.09	□□□□□ -0.31
HMGXB3-205	ENST00000514469	MOB2	Q70IA6	237 aa		13.09	□□□□□ -0.31
HMGXB3-205	ENST00000514469	TSKS	Q9UJT2	592 aa		13.09	□□□□□ -0.31
HMGXB3-205	ENST00000514469	AOX1	Q06278	1338 aa		13.09	□□□□□ -0.31
HMGXB3-205	ENST00000514469	NF2	P35240	595 aa		13.08	□□□□□ -0.32
HMGXB3-205	ENST00000514469	KIF23	Q02241	960 aa	Predicted RBP	13.08	□□□□□ -0.32
HMGXB3-205	ENST00000514469	CAVIN4	Q5BKX8	364 aa		13.08	□□□□□ -0.32
HMGXB3-205	ENST00000514469	INTS3	Q68E01	1043 aa	Known RBP	13.08	□□□□□ -0.32
HMGXB3-205	ENST00000514469	ATG9A	Q7Z3C6	839 aa		13.08	□□□□□ -0.32
HMGXB3-205	ENST00000514469	MEIS3	Q99687	375 aa		13.08	□□□□□ -0.32
HMGXB3-205	ENST00000514469	SAGE1	Q9NXZ1	904 aa		13.08	□□□□□ -0.32
HMGXB3-205	ENST00000514469	SERPINA10	Q9UK55	444 aa		13.08	□□□□□ -0.32
HMGXB3-205	ENST00000514469	FBXO3	Q9UK99	471 aa		13.08	□□□□□ -0.32
HMGXB3-205	ENST00000514469	PPP2R3B	Q9Y5P8	575 aa		13.08	□□□□□ -0.32
HMGXB3-205	ENST00000514469	LRRFIP2	Q9Y608	721 aa	Known RBP	13.08	□□□□□ -0.32
HMGXB3-205	ENST00000514469	MYO1B	O43795	1136 aa		13.07	□□□□□ -0.32
HMGXB3-205	ENST00000514469	CIAO1	O76071	339 aa		13.07	□□□□□ -0.32
HMGXB3-205	ENST00000514469	VPS37D	Q86XT2	251 aa		13.07	□□□□□ -0.32
HMGXB3-205	ENST00000514469	PRMT6	Q96LA8	375 aa	Predicted RBP	13.07	□□□□□ -0.32
HMGXB3-205	ENST00000514469	DEFB129	Q9H1M3	183 aa		13.07	□□□□□ -0.32
HMGXB3-205	ENST00000514469	TTF2	Q9UNY4	1162 aa	Known RBP	13.07	□□□□□ -0.32
HMGXB3-205	ENST00000514469	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	13.07	□□□□□ -0.32
HMGXB3-205	ENST00000514469	HDAC5	Q9UQL6	1122 aa		13.07	□□□□□ -0.32
HMGXB3-205	ENST00000514469	CLRN2	A0PK11	232 aa		13.06	□□□□□ -0.32
HMGXB3-205	ENST00000514469	UBE2Q2L	H0YL09	131 aa		13.06	□□□□□ -0.32
HMGXB3-205	ENST00000514469	CAPN15	O75808	1086 aa		13.06	□□□□□ -0.32
HMGXB3-205	ENST00000514469	IFIT1	P09914	478 aa	Known RBP	13.06	□□□□□ -0.32
HMGXB3-205	ENST00000514469	TRIM27	P14373	513 aa		13.06	□□□□□ -0.32
HMGXB3-205	ENST00000514469	BCAM	P50895	628 aa		13.06	□□□□□ -0.32
HMGXB3-205	ENST00000514469	TBC1D22A	Q8WUA7	517 aa		13.06	□□□□□ -0.32
HMGXB3-205	ENST00000514469	LPIN2	Q92539	896 aa		13.06	□□□□□ -0.32
HMGXB3-205	ENST00000514469	BCAR3	O75815	825 aa		13.05	□□□□□ -0.32
HMGXB3-205	ENST00000514469	SLC5A1	P13866	664 aa		13.05	□□□□□ -0.32
HMGXB3-205	ENST00000514469	RBM5	P52756	815 aa	Known RBP eCLIP	13.05	□□□□□ -0.32
HMGXB3-205	ENST00000514469	HNRNPU	Q00839	825 aa	Known RBP eCLIP	13.05	□□□□□ -0.32
HMGXB3-205	ENST00000514469	CHAF1A	Q13111	956 aa	Predicted RBP	13.05	□□□□□ -0.32
HMGXB3-205	ENST00000514469	TTLL12	Q14166	644 aa	Predicted RBP	13.05	□□□□□ -0.32
HMGXB3-205	ENST00000514469	GRIK5	Q16478	980 aa		13.05	□□□□□ -0.32
HMGXB3-205	ENST00000514469	SPDYE2	Q495Y8	402 aa		13.05	□□□□□ -0.32
HMGXB3-205	ENST00000514469	ATF7IP	Q6VMQ6	1270 aa		13.05	□□□□□ -0.32
HMGXB3-205	ENST00000514469	REM2	Q8IYK8	340 aa	Predicted RBP	13.05	□□□□□ -0.32
HMGXB3-205	ENST00000514469	CSRNP1	Q96S65	589 aa		13.05	□□□□□ -0.32
HMGXB3-205	ENST00000514469	SIL1	Q9H173	461 aa		13.05	□□□□□ -0.32
HMGXB3-205	ENST00000514469	VEZT	Q9HBM0	779 aa		13.05	□□□□□ -0.32
HMGXB3-205	ENST00000514469	IPO8	O15397	1037 aa	Known RBP	13.04	□□□□□ -0.32
HMGXB3-205	ENST00000514469	FRAT2	O75474	233 aa	Predicted RBP	13.04	□□□□□ -0.32
HMGXB3-205	ENST00000514469	GNAI3	P08754	354 aa		13.04	□□□□□ -0.32
HMGXB3-205	ENST00000514469	CRK	P46108	304 aa		13.04	□□□□□ -0.32
HMGXB3-205	ENST00000514469	HDLBP	Q00341	1268 aa	Known RBP	13.04	□□□□□ -0.32
HMGXB3-205	ENST00000514469	MTX1	Q13505	466 aa		13.04	□□□□□ -0.32
HMGXB3-205	ENST00000514469	MAP3K11	Q16584	847 aa		13.04	□□□□□ -0.32
HMGXB3-205	ENST00000514469	LDLRAD1	Q5T700	205 aa		13.04	□□□□□ -0.32
HMGXB3-205	ENST00000514469	ARMC9	Q7Z3E5	817 aa		13.04	□□□□□ -0.32
HMGXB3-205	ENST00000514469	DZIP1L	Q8IYY4	767 aa	Known RBP	13.04	□□□□□ -0.32
HMGXB3-205	ENST00000514469	COPRS	Q9NQ92	184 aa		13.04	□□□□□ -0.32
HMGXB3-205	ENST00000514469	RNF186	Q9NXI6	227 aa		13.04	□□□□□ -0.32
HMGXB3-205	ENST00000514469	ZNF70	Q9UC06	446 aa	Predicted RBP	13.04	□□□□□ -0.32
HMGXB3-205	ENST00000514469	TNN	Q9UQP3	1299 aa		13.04	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 64 ms