RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 NT5C1AQ9BXI3 368 aa11.17□□□□□ -0.62
NUP54-215ENST00000514313 GINM1Q9NU53 330 aa11.17□□□□□ -0.62
NUP54-215ENST00000514313 EFR3BQ9Y2G0 817 aa11.17□□□□□ -0.62
NUP54-215ENST00000514313 SIN3BO75182 1162 aa11.16□□□□□ -0.62
NUP54-215ENST00000514313 TFE3P19532 575 aaPredicted RBP11.16□□□□□ -0.62
NUP54-215ENST00000514313 PCBP4P57723 403 aaKnown RBP11.16□□□□□ -0.62
NUP54-215ENST00000514313 LMNB2Q03252 620 aa11.16□□□□□ -0.62
NUP54-215ENST00000514313 CAMK2GQ13555 558 aaPredicted RBP11.16□□□□□ -0.62
NUP54-215ENST00000514313 PCSK7Q16549 785 aa11.16□□□□□ -0.62
NUP54-215ENST00000514313 SNAP47Q5SQN1 464 aa11.16□□□□□ -0.62
NUP54-215ENST00000514313 PCNX4Q63HM2 1172 aa11.16□□□□□ -0.62
NUP54-215ENST00000514313 CEP135Q66GS9 1140 aa11.16□□□□□ -0.62
NUP54-215ENST00000514313 ADAMTSL4Q6UY14 1074 aa11.16□□□□□ -0.62
NUP54-215ENST00000514313 AGMOQ6ZNB7 445 aa11.16□□□□□ -0.62
NUP54-215ENST00000514313 VWA5B2Q8N398 1253 aa11.16□□□□□ -0.62
NUP54-215ENST00000514313 RBSNQ9H1K0 784 aa11.16□□□□□ -0.62
NUP54-215ENST00000514313 UBP1Q9NZI7 540 aa11.16□□□□□ -0.62
NUP54-215ENST00000514313 GREM1O60565 184 aa11.15□□□□□ -0.62
NUP54-215ENST00000514313 SMNDC1O75940 238 aaKnown RBP eCLIP11.15□□□□□ -0.62
NUP54-215ENST00000514313 SSBP05455 408 aaKnown RBP eCLIP11.15□□□□□ -0.62
NUP54-215ENST00000514313 BMP4P12644 408 aa11.15□□□□□ -0.62
NUP54-215ENST00000514313 CPB1P15086 417 aa11.15□□□□□ -0.62
NUP54-215ENST00000514313 ZNF157P51786 506 aaPredicted RBP11.15□□□□□ -0.62
NUP54-215ENST00000514313 GOLM1Q8NBJ4 401 aa11.15□□□□□ -0.62
NUP54-215ENST00000514313 NAGPAQ9UK23 515 aa11.15□□□□□ -0.62
NUP54-215ENST00000514313 FAM35AQ86V20 835 aa11.14□□□□□ -0.63
NUP54-215ENST00000514313 BSNDQ8WZ55 320 aa11.14□□□□□ -0.63
NUP54-215ENST00000514313 CLEC4MQ9H2X3 399 aaPredicted RBP11.14□□□□□ -0.63
NUP54-215ENST00000514313 PIF1Q9H611 641 aa11.14□□□□□ -0.63
NUP54-215ENST00000514313 SLC6A14Q9UN76 642 aa11.14□□□□□ -0.63
NUP54-215ENST00000514313 CRKP46108 304 aa11.13□□□□□ -0.63
NUP54-215ENST00000514313 RPS26P62854 115 aaKnown RBP11.13□□□□□ -0.63
NUP54-215ENST00000514313 SV2AQ7L0J3 742 aa11.13□□□□□ -0.63
NUP54-215ENST00000514313 TNFRSF25Q93038 417 aa11.13□□□□□ -0.63
NUP54-215ENST00000514313 PLD4Q96BZ4 506 aa11.13□□□□□ -0.63
NUP54-215ENST00000514313 ZNF408Q9H9D4 720 aa11.13□□□□□ -0.63
NUP54-215ENST00000514313 TMEM39AQ9NV64 488 aa11.13□□□□□ -0.63
NUP54-215ENST00000514313 SOX9P48436 509 aa11.12□□□□□ -0.63
NUP54-215ENST00000514313 PERM1Q5SV97 790 aa11.12□□□□□ -0.63
NUP54-215ENST00000514313 SOGA3Q5TF21 947 aa11.12□□□□□ -0.63
NUP54-215ENST00000514313 RASIP1Q5U651 963 aa11.12□□□□□ -0.63
NUP54-215ENST00000514313 NOP9Q86U38 636 aaKnown RBP11.12□□□□□ -0.63
NUP54-215ENST00000514313 OSBPL2Q9H1P3 480 aa11.12□□□□□ -0.63
NUP54-215ENST00000514313 SOX13Q9UN79 622 aa11.12□□□□□ -0.63
NUP54-215ENST00000514313 ADH7P40394 386 aa11.11□□□□□ -0.63
NUP54-215ENST00000514313 PCDH1Q08174 1060 aa11.11□□□□□ -0.63
NUP54-215ENST00000514313 APOBRQ0VD83 1088 aa11.11□□□□□ -0.63
NUP54-215ENST00000514313 NFX1Q12986 1120 aaKnown RBP11.11□□□□□ -0.63
NUP54-215ENST00000514313 FAM196AQ6ZSG2 479 aa11.11□□□□□ -0.63
NUP54-215ENST00000514313 TRIM42Q8IWZ5 723 aa11.11□□□□□ -0.63
NUP54-215ENST00000514313 NANOS1Q8WY41 292 aaKnown RBP11.11□□□□□ -0.63
NUP54-215ENST00000514313 ZSWIM4Q9H7M6 989 aa11.11□□□□□ -0.63
NUP54-215ENST00000514313 AVENQ9NQS1 362 aaPredicted RBP11.11□□□□□ -0.63
NUP54-215ENST00000514313 KLF15Q9UIH9 416 aa11.11□□□□□ -0.63
NUP54-215ENST00000514313 PCDHB5Q9Y5E4 795 aa11.11□□□□□ -0.63
NUP54-215ENST00000514313 B3GALT4O96024 378 aa11.1□□□□□ -0.63
NUP54-215ENST00000514313 BNC2Q6ZN30 1099 aaPredicted RBP11.1□□□□□ -0.63
NUP54-215ENST00000514313 VN1R5Q7Z5H4 357 aa11.1□□□□□ -0.63
NUP54-215ENST00000514313 CKAP2LQ8IYA6 745 aa11.1□□□□□ -0.63
NUP54-215ENST00000514313 MICALL1Q8N3F8 863 aa11.1□□□□□ -0.63
NUP54-215ENST00000514313 LPIN3Q9BQK8 851 aa11.1□□□□□ -0.63
NUP54-215ENST00000514313 SMG9Q9H0W8 520 aaKnown RBP11.1□□□□□ -0.63
NUP54-215ENST00000514313 STRIP2Q9ULQ0 834 aa11.1□□□□□ -0.63
NUP54-215ENST00000514313 TRIM33Q9UPN9 1127 aa11.1□□□□□ -0.63
NUP54-215ENST00000514313 MRVI1Q9Y6F6 885 aa11.1□□□□□ -0.63
NUP54-215ENST00000514313 CADPSQ9ULU8 1353 aa11.09□□□□□ -0.63
NUP54-215ENST00000514313 F13A1P00488 732 aa11.09□□□□□ -0.63
NUP54-215ENST00000514313 PTPRAP18433 802 aa11.09□□□□□ -0.63
NUP54-215ENST00000514313 MX2P20592 715 aa11.09□□□□□ -0.63
NUP54-215ENST00000514313 BMP6P22004 513 aa11.09□□□□□ -0.63
NUP54-215ENST00000514313 PPP2R3AQ06190 1150 aa11.09□□□□□ -0.63
NUP54-215ENST00000514313 COL9A2Q14055 689 aaPredicted RBP11.09□□□□□ -0.63
NUP54-215ENST00000514313 ZNF423Q2M1K9 1284 aa11.09□□□□□ -0.63
NUP54-215ENST00000514313 NKD1Q969G9 470 aa11.09□□□□□ -0.63
NUP54-215ENST00000514313 LACRTQ9GZZ8 138 aa11.09□□□□□ -0.63
NUP54-215ENST00000514313 ETFBP38117 255 aa11.08□□□□□ -0.64
NUP54-215ENST00000514313 GAS6Q14393 721 aa11.08□□□□□ -0.64
NUP54-215ENST00000514313 ELMSAN1Q6PJG2 1045 aa11.08□□□□□ -0.64
NUP54-215ENST00000514313 FBXO27Q8NI29 283 aa11.08□□□□□ -0.64
NUP54-215ENST00000514313 STK35Q8TDR2 534 aa11.08□□□□□ -0.64
NUP54-215ENST00000514313 PUS7Q96PZ0 661 aaKnown RBP11.08□□□□□ -0.64
NUP54-215ENST00000514313 MDFIQ99750 246 aa11.08□□□□□ -0.64
NUP54-215ENST00000514313 ADAM19Q9H013 955 aa11.08□□□□□ -0.64
NUP54-215ENST00000514313 C11orf95C9JLR9 678 aaPredicted RBP11.07□□□□□ -0.64
NUP54-215ENST00000514313 TLR3O15455 904 aaKnown RBP11.07□□□□□ -0.64
NUP54-215ENST00000514313 LMNB1P20700 586 aa11.07□□□□□ -0.64
NUP54-215ENST00000514313 NME2P22392 152 aa11.07□□□□□ -0.64
NUP54-215ENST00000514313 CANXP27824 592 aaKnown RBP11.07□□□□□ -0.64
NUP54-215ENST00000514313 SEPT6Q14141 434 aa11.07□□□□□ -0.64
NUP54-215ENST00000514313 BMS1Q14692 1282 aaKnown RBP11.07□□□□□ -0.64
NUP54-215ENST00000514313 SEZ6Q53EL9 994 aa11.07□□□□□ -0.64
NUP54-215ENST00000514313 SLITRK4Q8IW52 837 aa11.07□□□□□ -0.64
NUP54-215ENST00000514313 SULF2Q8IWU5 870 aa11.07□□□□□ -0.64
NUP54-215ENST00000514313 ADARB2-AS1A8MUL3 147 aa11.06□□□□□ -0.64
NUP54-215ENST00000514313 ARAFP10398 606 aa11.06□□□□□ -0.64
NUP54-215ENST00000514313 ADH6P28332 368 aa11.06□□□□□ -0.64
NUP54-215ENST00000514313 FCHSD1Q86WN1 690 aa11.06□□□□□ -0.64
NUP54-215ENST00000514313 LRRC3Q9BY71 257 aa11.06□□□□□ -0.64
NUP54-215ENST00000514313 MIR1-1HGQ9H1L0 117 aa11.06□□□□□ -0.64
NUP54-215ENST00000514313 SAMM50Q9Y512 469 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms