RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 SRCAPQ6ZRS2 3230 aa14.11□□□□□ -0.15
NUP54-202ENST00000502850 M0R2C6 588 aa14.11□□□□□ -0.15
NUP54-202ENST00000502850 PLSCR1O15162 318 aa14.11□□□□□ -0.15
NUP54-202ENST00000502850 DHX16O60231 1041 aaKnown RBP14.11□□□□□ -0.15
NUP54-202ENST00000502850 GPTP24298 496 aa14.11□□□□□ -0.15
NUP54-202ENST00000502850 HLFQ16534 295 aa14.11□□□□□ -0.15
NUP54-202ENST00000502850 RGS22Q8NE09 1264 aa14.11□□□□□ -0.15
NUP54-202ENST00000502850 SPATA32Q96LK8 384 aa14.11□□□□□ -0.15
NUP54-202ENST00000502850 NOL7Q9UMY1 257 aaKnown RBP14.11□□□□□ -0.15
NUP54-202ENST00000502850 CCDC192P0DO97 292 aa14.1□□□□□ -0.15
NUP54-202ENST00000502850 ADORA1P30542 326 aa14.1□□□□□ -0.15
NUP54-202ENST00000502850 EVCP57679 992 aa14.1□□□□□ -0.15
NUP54-202ENST00000502850 SCRN1Q12765 414 aa14.1□□□□□ -0.15
NUP54-202ENST00000502850 PARP10Q53GL7 1025 aa14.1□□□□□ -0.15
NUP54-202ENST00000502850 PTF1AQ7RTS3 328 aa14.1□□□□□ -0.15
NUP54-202ENST00000502850 ZNF34Q8IZ26 560 aa14.1□□□□□ -0.15
NUP54-202ENST00000502850 RNF214Q8ND24 703 aa14.1□□□□□ -0.15
NUP54-202ENST00000502850 SYTL4Q96C24 671 aaPredicted RBP14.1□□□□□ -0.15
NUP54-202ENST00000502850 GREM2Q9H772 168 aa14.1□□□□□ -0.15
NUP54-202ENST00000502850 TBC1D2BQ9UPU7 963 aa14.1□□□□□ -0.15
NUP54-202ENST00000502850 RGPD3A6NKT7 1758 aaPredicted RBP14.1□□□□□ -0.15
NUP54-202ENST00000502850 RGPD4Q7Z3J3 1758 aa14.1□□□□□ -0.15
NUP54-202ENST00000502850 DOCK2Q92608 1830 aa14.09□□□□□ -0.15
NUP54-202ENST00000502850 RTL9Q8NET4 1388 aa14.09□□□□□ -0.15
NUP54-202ENST00000502850 PDE8BO95263 885 aa14.09□□□□□ -0.15
NUP54-202ENST00000502850 RESTQ13127 1097 aa14.09□□□□□ -0.15
NUP54-202ENST00000502850 PUM3Q15397 648 aaKnown RBP14.09□□□□□ -0.15
NUP54-202ENST00000502850 TTC6Q86TZ1 520 aa14.09□□□□□ -0.15
NUP54-202ENST00000502850 NSUN7Q8NE18 718 aaKnown RBP14.09□□□□□ -0.15
NUP54-202ENST00000502850 OSBP2Q969R2 916 aa14.09□□□□□ -0.15
NUP54-202ENST00000502850 NUP62CLQ9H1M0 184 aa14.09□□□□□ -0.15
NUP54-202ENST00000502850 BCORQ6W2J9 1755 aa14.08□□□□□ -0.15
NUP54-202ENST00000502850 ARID4AP29374 1257 aaPredicted RBP14.08□□□□□ -0.15
NUP54-202ENST00000502850 ZAP70P43403 619 aa14.08□□□□□ -0.15
NUP54-202ENST00000502850 UBE3CQ15386 1083 aa14.08□□□□□ -0.15
NUP54-202ENST00000502850 MAP3K11Q16584 847 aa14.08□□□□□ -0.15
NUP54-202ENST00000502850 RALYLQ86SE5 291 aaKnown RBP14.08□□□□□ -0.15
NUP54-202ENST00000502850 FERMT3Q86UX7 667 aa14.08□□□□□ -0.15
NUP54-202ENST00000502850 VGLL2Q8N8G2 317 aa14.08□□□□□ -0.15
NUP54-202ENST00000502850 LPIN2Q92539 896 aa14.08□□□□□ -0.15
NUP54-202ENST00000502850 ZNF396Q96N95 335 aaPredicted RBP14.08□□□□□ -0.15
NUP54-202ENST00000502850 SLC4A9Q96Q91 983 aa14.08□□□□□ -0.15
NUP54-202ENST00000502850 CCDC87Q9NVE4 849 aa14.08□□□□□ -0.15
NUP54-202ENST00000502850 ZMYM6O95789 1325 aa14.08□□□□□ -0.16
NUP54-202ENST00000502850 PTPDC1A2A3K4 754 aa14.08□□□□□ -0.16
NUP54-202ENST00000502850 JAK2O60674 1132 aa14.08□□□□□ -0.16
NUP54-202ENST00000502850 CHGBP05060 677 aa14.08□□□□□ -0.16
NUP54-202ENST00000502850 SLC5A1P13866 664 aa14.08□□□□□ -0.16
NUP54-202ENST00000502850 NCOA7Q8NI08 942 aa14.08□□□□□ -0.16
NUP54-202ENST00000502850 LEO1Q8WVC0 666 aaPredicted RBP14.08□□□□□ -0.16
NUP54-202ENST00000502850 CCDC85AQ96PX6 553 aaPredicted RBP14.08□□□□□ -0.16
NUP54-202ENST00000502850 COL5A3P25940 1745 aaPredicted RBP14.07□□□□□ -0.16
NUP54-202ENST00000502850 ZNF213O14771 459 aa14.07□□□□□ -0.16
NUP54-202ENST00000502850 GPAA1O43292 621 aa14.07□□□□□ -0.16
NUP54-202ENST00000502850 CAVIN2O95810 425 aa14.07□□□□□ -0.16
NUP54-202ENST00000502850 PTMAP06454 111 aaKnown RBP14.07□□□□□ -0.16
NUP54-202ENST00000502850 ADD2P35612 726 aa14.07□□□□□ -0.16
NUP54-202ENST00000502850 EIF5P55010 431 aaKnown RBP14.07□□□□□ -0.16
NUP54-202ENST00000502850 APOBRQ0VD83 1088 aa14.07□□□□□ -0.16
NUP54-202ENST00000502850 TRDNQ13061 729 aa14.07□□□□□ -0.16
NUP54-202ENST00000502850 COL9A3Q14050 684 aaPredicted RBP14.07□□□□□ -0.16
NUP54-202ENST00000502850 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.07□□□□□ -0.16
NUP54-202ENST00000502850 SMARCC1Q92922 1105 aaPredicted RBP14.07□□□□□ -0.16
NUP54-202ENST00000502850 FUCA2Q9BTY2 467 aa14.07□□□□□ -0.16
NUP54-202ENST00000502850 ZKSCAN5Q9Y2L8 839 aa14.07□□□□□ -0.16
NUP54-202ENST00000502850 SALL1Q9NSC2 1324 aa14.07□□□□□ -0.16
NUP54-202ENST00000502850 ZNF500O60304 480 aaPredicted RBP14.06□□□□□ -0.16
NUP54-202ENST00000502850 MCAMP43121 646 aa14.06□□□□□ -0.16
NUP54-202ENST00000502850 UTP14AQ9BVJ6 771 aaKnown RBP14.06□□□□□ -0.16
NUP54-202ENST00000502850 ZNF652Q9Y2D9 606 aa14.06□□□□□ -0.16
NUP54-202ENST00000502850 UBN2Q6ZU65 1347 aa14.06□□□□□ -0.16
NUP54-202ENST00000502850 KCNQ2O43526 872 aa14.05□□□□□ -0.16
NUP54-202ENST00000502850 PDIA3P30101 505 aaKnown RBP14.05□□□□□ -0.16
NUP54-202ENST00000502850 SCARF1Q14162 830 aa14.05□□□□□ -0.16
NUP54-202ENST00000502850 CCDC152Q4G0S7 254 aa14.05□□□□□ -0.16
NUP54-202ENST00000502850 LRRC2Q9BYS8 371 aa14.05□□□□□ -0.16
NUP54-202ENST00000502850 TNMDQ9H2S6 317 aa14.05□□□□□ -0.16
NUP54-202ENST00000502850 CARMIL3Q8ND23 1372 aa14.05□□□□□ -0.16
NUP54-202ENST00000502850 CHD4Q14839 1912 aa14.05□□□□□ -0.16
NUP54-202ENST00000502850 RGL2O15211 777 aa14.04□□□□□ -0.16
NUP54-202ENST00000502850 FGAP02671 866 aa14.04□□□□□ -0.16
NUP54-202ENST00000502850 TPM3P06753 285 aa14.04□□□□□ -0.16
NUP54-202ENST00000502850 HCLS1P14317 486 aaPredicted RBP14.04□□□□□ -0.16
NUP54-202ENST00000502850 CCDC102BQ68D86 513 aa14.04□□□□□ -0.16
NUP54-202ENST00000502850 MB21D2Q8IYB1 491 aaPredicted RBP14.04□□□□□ -0.16
NUP54-202ENST00000502850 PROM2Q8N271 834 aa14.04□□□□□ -0.16
NUP54-202ENST00000502850 BICD2Q8TD16 824 aa14.04□□□□□ -0.16
NUP54-202ENST00000502850 DDX11Q96FC9 970 aa14.04□□□□□ -0.16
NUP54-202ENST00000502850 MPHOSPH8Q99549 860 aa14.04□□□□□ -0.16
NUP54-202ENST00000502850 TIAM2Q8IVF5 1701 aa14.04□□□□□ -0.16
NUP54-202ENST00000502850 CTAGE5O15320 804 aa14.04□□□□□ -0.16
NUP54-202ENST00000502850 PRC1O43663 620 aa14.04□□□□□ -0.16
NUP54-202ENST00000502850 FGFR2P21802 821 aa14.04□□□□□ -0.16
NUP54-202ENST00000502850 ATP6V1AP38606 617 aa14.04□□□□□ -0.16
NUP54-202ENST00000502850 SLC9C2Q5TAH2 1124 aa14.04□□□□□ -0.16
NUP54-202ENST00000502850 GIMAP6Q6P9H5 292 aa14.04□□□□□ -0.16
NUP54-202ENST00000502850 RBM43Q6ZSC3 357 aaKnown RBP14.04□□□□□ -0.16
NUP54-202ENST00000502850 FAM200AQ8TCP9 573 aa14.04□□□□□ -0.16
NUP54-202ENST00000502850 ACSBG1Q96GR2 724 aa14.04□□□□□ -0.16
NUP54-202ENST00000502850 PUS7LQ9H0K6 701 aaKnown RBP14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms