RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 LATS2Q9NRM7 1088 aa8.21□□□□□ -1.1
UPF3A-205ENST00000479712 ATXN7L1Q9ULK2 861 aaPredicted RBP8.21□□□□□ -1.1
UPF3A-205ENST00000479712 RGS12O14924 1447 aa8.2□□□□□ -1.1
UPF3A-205ENST00000479712 LOC100996750A0A140TA64 210 aa8.2□□□□□ -1.1
UPF3A-205ENST00000479712 MEI1Q5TIA1 1274 aa8.2□□□□□ -1.1
UPF3A-205ENST00000479712 KIAA0319Q5VV43 1072 aa8.2□□□□□ -1.1
UPF3A-205ENST00000479712 RAB44Q7Z6P3 723 aaPredicted RBP8.2□□□□□ -1.1
UPF3A-205ENST00000479712 BHMTQ93088 406 aa8.2□□□□□ -1.1
UPF3A-205ENST00000479712 GTPBP3Q969Y2 492 aaKnown RBP8.2□□□□□ -1.1
UPF3A-205ENST00000479712 SLC30A3Q99726 388 aa8.2□□□□□ -1.1
UPF3A-205ENST00000479712 KRTAP4-6Q9BYQ5 205 aa8.2□□□□□ -1.1
UPF3A-205ENST00000479712 TGIF2Q9GZN2 237 aa8.2□□□□□ -1.1
UPF3A-205ENST00000479712 EHD4Q9H223 541 aa8.2□□□□□ -1.1
UPF3A-205ENST00000479712 CCSER2Q9H7U1 834 aa8.2□□□□□ -1.1
UPF3A-205ENST00000479712 HCN2Q9UL51 889 aa8.2□□□□□ -1.1
UPF3A-205ENST00000479712 TRAK1Q9UPV9 953 aa8.2□□□□□ -1.1
UPF3A-205ENST00000479712 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.2□□□□□ -1.1
UPF3A-205ENST00000479712 C9orf84Q5VXU9 1444 aa8.2□□□□□ -1.1
UPF3A-205ENST00000479712 IQGAP2Q13576 1575 aa8.19□□□□□ -1.1
UPF3A-205ENST00000479712 VWDEQ8N2E2 1590 aa8.19□□□□□ -1.1
UPF3A-205ENST00000479712 LRP6O75581 1613 aa8.19□□□□□ -1.1
UPF3A-205ENST00000479712 A0A1W2PP55 124 aa8.19□□□□□ -1.1
UPF3A-205ENST00000479712 SOX18P35713 384 aa8.19□□□□□ -1.1
UPF3A-205ENST00000479712 ST13P50502 369 aaKnown RBP8.19□□□□□ -1.1
UPF3A-205ENST00000479712 TAF1CQ15572 869 aaPredicted RBP8.19□□□□□ -1.1
UPF3A-205ENST00000479712 MEX3CQ5U5Q3 659 aaKnown RBP8.19□□□□□ -1.1
UPF3A-205ENST00000479712 PEAR1Q5VY43 1037 aaPredicted RBP8.19□□□□□ -1.1
UPF3A-205ENST00000479712 NCAPG2Q86XI2 1143 aa8.19□□□□□ -1.1
UPF3A-205ENST00000479712 SREK1Q8WXA9 508 aaKnown RBP8.19□□□□□ -1.1
UPF3A-205ENST00000479712 PPP4R2Q9NY27 417 aa8.19□□□□□ -1.1
UPF3A-205ENST00000479712 TLR7Q9NYK1 1049 aaKnown RBP8.19□□□□□ -1.1
UPF3A-205ENST00000479712 SALL4Q9UJQ4 1053 aa8.19□□□□□ -1.1
UPF3A-205ENST00000479712 PHF24Q9UPV7 400 aa8.19□□□□□ -1.1
UPF3A-205ENST00000479712 USP31Q70CQ4 1352 aa8.19□□□□□ -1.1
UPF3A-205ENST00000479712 MAP3K6O95382 1288 aa8.18□□□□□ -1.1
UPF3A-205ENST00000479712 FGFR3P22607 806 aa8.18□□□□□ -1.1
UPF3A-205ENST00000479712 GSTT1P30711 240 aa8.18□□□□□ -1.1
UPF3A-205ENST00000479712 C1QTNF8P60827 252 aa8.18□□□□□ -1.1
UPF3A-205ENST00000479712 PLAURQ03405 335 aa8.18□□□□□ -1.1
UPF3A-205ENST00000479712 HYAL2Q12891 473 aa8.18□□□□□ -1.1
UPF3A-205ENST00000479712 NEUROD1Q13562 356 aa8.18□□□□□ -1.1
UPF3A-205ENST00000479712 HS2ST1Q7LGA3 356 aa8.18□□□□□ -1.1
UPF3A-205ENST00000479712 ATP10AO60312 1499 aa8.18□□□□□ -1.1
UPF3A-205ENST00000479712 CDK12Q9NYV4 1490 aaPredicted RBP8.18□□□□□ -1.1
UPF3A-205ENST00000479712 KIF4AO95239 1232 aa8.17□□□□□ -1.1
UPF3A-205ENST00000479712 COL13A1Q5TAT6 717 aaPredicted RBP8.17□□□□□ -1.1
UPF3A-205ENST00000479712 DHX32Q7L7V1 743 aaKnown RBP8.17□□□□□ -1.1
UPF3A-205ENST00000479712 GLIS3Q8NEA6 775 aa8.17□□□□□ -1.1
UPF3A-205ENST00000479712 TRERF1Q96PN7 1200 aa8.17□□□□□ -1.1
UPF3A-205ENST00000479712 LIN7BQ9HAP6 207 aa8.17□□□□□ -1.1
UPF3A-205ENST00000479712 MYO3AQ8NEV4 1616 aa8.17□□□□□ -1.1
UPF3A-205ENST00000479712 STRCP1A6NGW2 1772 aa8.16□□□□□ -1.1
UPF3A-205ENST00000479712 HOXD8P13378 290 aaPredicted RBP8.16□□□□□ -1.1
UPF3A-205ENST00000479712 ZNF142P52746 1687 aaPredicted RBP8.16□□□□□ -1.1
UPF3A-205ENST00000479712 ZNF394Q53GI3 561 aa8.16□□□□□ -1.1
UPF3A-205ENST00000479712 FAM182BQ5T319 152 aa8.16□□□□□ -1.1
UPF3A-205ENST00000479712 PRPF40BQ6NWY9 871 aaKnown RBP8.16□□□□□ -1.1
UPF3A-205ENST00000479712 FOXR1Q6PIV2 292 aa8.16□□□□□ -1.1
UPF3A-205ENST00000479712 NEURL4Q96JN8 1562 aa8.16□□□□□ -1.1
UPF3A-205ENST00000479712 DRC1Q96MC2 740 aa8.16□□□□□ -1.1
UPF3A-205ENST00000479712 NSUN5Q96P11 429 aaKnown RBP8.16□□□□□ -1.1
UPF3A-205ENST00000479712 GGT7Q9UJ14 662 aa8.16□□□□□ -1.1
UPF3A-205ENST00000479712 TTF2Q9UNY4 1162 aaKnown RBP8.16□□□□□ -1.1
UPF3A-205ENST00000479712 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.16□□□□□ -1.1
UPF3A-205ENST00000479712 ABCA8O94911 1581 aa8.15□□□□□ -1.1
UPF3A-205ENST00000479712 CEP170BQ9Y4F5 1589 aaPredicted RBP8.15□□□□□ -1.1
UPF3A-205ENST00000479712 MAGI2Q86UL8 1455 aa8.15□□□□□ -1.1
UPF3A-205ENST00000479712 CDC14CA4D256 554 aa8.15□□□□□ -1.1
UPF3A-205ENST00000479712 FCGRTP55899 365 aa8.15□□□□□ -1.1
UPF3A-205ENST00000479712 PTPN12Q05209 780 aaKnown RBP8.15□□□□□ -1.1
UPF3A-205ENST00000479712 SF3A1Q15459 793 aaKnown RBP8.15□□□□□ -1.1
UPF3A-205ENST00000479712 USP48Q86UV5 1035 aa8.15□□□□□ -1.1
UPF3A-205ENST00000479712 OSMRQ99650 979 aa8.15□□□□□ -1.1
UPF3A-205ENST00000479712 ZKSCAN3Q9BRR0 538 aa8.15□□□□□ -1.1
UPF3A-205ENST00000479712 ACBD3Q9H3P7 528 aa8.15□□□□□ -1.1
UPF3A-205ENST00000479712 GPR25O00155 361 aa8.14□□□□□ -1.11
UPF3A-205ENST00000479712 ACPPP15309 386 aa8.14□□□□□ -1.11
UPF3A-205ENST00000479712 NRLP54845 237 aa8.14□□□□□ -1.11
UPF3A-205ENST00000479712 ZNF654Q8IZM8 581 aa8.14□□□□□ -1.11
UPF3A-205ENST00000479712 C3orf58Q8NDZ4 430 aa8.14□□□□□ -1.11
UPF3A-205ENST00000479712 SPACA7Q96KW9 195 aa8.14□□□□□ -1.11
UPF3A-205ENST00000479712 CNTNAP3BQ96NU0 1288 aa8.14□□□□□ -1.11
UPF3A-205ENST00000479712 TINF2Q9BSI4 451 aa8.14□□□□□ -1.11
UPF3A-205ENST00000479712 OXCT2Q9BYC2 517 aaPredicted RBP8.14□□□□□ -1.11
UPF3A-205ENST00000479712 CNTNAP3Q9BZ76 1288 aa8.14□□□□□ -1.11
UPF3A-205ENST00000479712 CAPN10Q9HC96 672 aa8.14□□□□□ -1.11
UPF3A-205ENST00000479712 ABCB6Q9NP58 842 aa8.14□□□□□ -1.11
UPF3A-205ENST00000479712 DDX41Q9UJV9 622 aaKnown RBP8.14□□□□□ -1.11
UPF3A-205ENST00000479712 PRR12Q9ULL5 1215 aa8.14□□□□□ -1.11
UPF3A-205ENST00000479712 PCDHGB7Q9Y5F8 929 aa8.14□□□□□ -1.11
UPF3A-205ENST00000479712 POLR1AO95602 1720 aaPredicted RBP8.14□□□□□ -1.11
UPF3A-205ENST00000479712 TMEM238LA0A1B0GVL6 79 aa8.13□□□□□ -1.11
UPF3A-205ENST00000479712 PPFIA3O75145 1194 aa8.13□□□□□ -1.11
UPF3A-205ENST00000479712 LORP23490 312 aaPredicted RBP8.13□□□□□ -1.11
UPF3A-205ENST00000479712 CTBSQ01459 385 aa8.13□□□□□ -1.11
UPF3A-205ENST00000479712 DTHD1Q6ZMT9 781 aa8.13□□□□□ -1.11
UPF3A-205ENST00000479712 TCF12Q99081 682 aa8.13□□□□□ -1.11
UPF3A-205ENST00000479712 ROBO1Q9Y6N7 1651 aa8.12□□□□□ -1.11
UPF3A-205ENST00000479712 XRCC5P13010 732 aaKnown RBP8.12□□□□□ -1.11
UPF3A-205ENST00000479712 RACK1P63244 317 aaKnown RBP8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms