RNA–Protein interactions for RNA: ENST00000478658.1

USF3-202, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 8,461 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-202ENST00000478658 AKNAD1Q5T1N1 836 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 TRIM56Q9BRZ2 755 aaKnown RBP6.07□□□□□ -1.44
USF3-202ENST00000478658 RASGRF2O14827 1237 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 MAN1A2O60476 641 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 NUP62P37198 522 aaPredicted RBP6.07□□□□□ -1.44
USF3-202ENST00000478658 PHEXP78562 749 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 PPP4R1Q8TF05 950 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 MBIPQ9NS73 344 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 SCHIP1Q9P0W5 487 aaPredicted RBP6.07□□□□□ -1.44
USF3-202ENST00000478658 BRPF3Q9ULD4 1205 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 TRAK1Q9UPV9 953 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 ME1P48163 572 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 VAV2P52735 878 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 EFCAB2Q5VUJ9 269 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 MRPL40Q9NQ50 206 aaKnown RBP6.07□□□□□ -1.44
USF3-202ENST00000478658 NKIRAS1Q9NYS0 192 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 ABCC9O60706 1549 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 ANKRD30BQ9BXX2 1392 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 PPP1R12AO14974 1030 aaPredicted RBP6.07□□□□□ -1.44
USF3-202ENST00000478658 PFDN1O60925 122 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 PPP2R5EQ16537 467 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 INTS8Q75QN2 995 aaKnown RBP6.07□□□□□ -1.44
USF3-202ENST00000478658 MAIP1Q8WWC4 291 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 CABP5Q9NP86 173 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 WWC3Q9ULE0 1092 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 PRMT3O60678 531 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 ABCD1P33897 745 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 TBCCQ15814 346 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 C19orf60Q96EN9 201 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 TRIM11Q96F44 468 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.07□□□□□ -1.44
USF3-202ENST00000478658 SCRIBQ14160 1630 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 PRDM2Q13029 1718 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 M0QZ92 97 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 BRD1O95696 1058 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 TBRG4Q969Z0 631 aaKnown RBP eCLIP6.07□□□□□ -1.44
USF3-202ENST00000478658 TUBB1Q9H4B7 451 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 CNOT7Q9UIV1 285 aaKnown RBP6.07□□□□□ -1.44
USF3-202ENST00000478658 AMOTL2Q9Y2J4 779 aa6.07□□□□□ -1.44
USF3-202ENST00000478658 TMCC1O94876 653 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 GSTA5Q7RTV2 222 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 EIF3CQ99613 913 aaKnown RBP6.06□□□□□ -1.44
USF3-202ENST00000478658 CARD10Q9BWT7 1032 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 OXCT2Q9BYC2 517 aaPredicted RBP6.06□□□□□ -1.44
USF3-202ENST00000478658 ZSWIM4Q9H7M6 989 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 EIF4G1Q04637 1599 aaKnown RBP6.06□□□□□ -1.44
USF3-202ENST00000478658 E7EVH7 732 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 SYNCRIPO60506 623 aaKnown RBP6.06□□□□□ -1.44
USF3-202ENST00000478658 FMNL1O95466 1100 aaPredicted RBP6.06□□□□□ -1.44
USF3-202ENST00000478658 LDHCP07864 332 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 KPNA2P52292 529 aaKnown RBP6.06□□□□□ -1.44
USF3-202ENST00000478658 NR5A1Q13285 461 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 ARL13BQ3SXY8 428 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 SH2D4AQ9H788 454 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 KIF9Q9HAQ2 790 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 ANO10Q9NW15 660 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 RAD50Q92878 1312 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 RASSF10A6NK89 507 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 GOLGA8MH3BSY2 632 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 DAPK1P53355 1430 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 FLIIQ13045 1269 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 WHAMMP3Q1A5X7 153 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 VTI1AQ96AJ9 217 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 SYTL2Q9HCH5 934 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 AFG3L2Q9Y4W6 797 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 HEXIM1O94992 359 aaKnown RBP6.06□□□□□ -1.44
USF3-202ENST00000478658 SKIP12755 728 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 SLC12A2P55011 1212 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 DBN1Q16643 649 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 PLEKHO1Q53GL0 409 aaPredicted RBP6.06□□□□□ -1.44
USF3-202ENST00000478658 DUSP27Q5VZP5 1158 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 DCAF11Q8TEB1 546 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 RABGGTAQ92696 567 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 TRIM15Q9C019 465 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 MRPL46Q9H2W6 279 aaKnown RBP6.06□□□□□ -1.44
USF3-202ENST00000478658 HSPA5P11021 654 aaKnown RBP6.06□□□□□ -1.44
USF3-202ENST00000478658 CYLC1P35663 651 aaPredicted RBP6.06□□□□□ -1.44
USF3-202ENST00000478658 SPAG1Q07617 926 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 LETM2Q2VYF4 491 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 JDP2Q8WYK2 163 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 SNX19Q92543 992 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 IQCDQ96DY2 449 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 SRPRBQ9Y5M8 271 aaKnown RBP6.06□□□□□ -1.44
USF3-202ENST00000478658 TNIKQ9UKE5 1360 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 TTC4O95801 387 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 DDX42Q86XP3 938 aaKnown RBP eCLIP6.06□□□□□ -1.44
USF3-202ENST00000478658 TTLL11Q8NHH1 800 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 COPG2Q9UBF2 871 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.06□□□□□ -1.44
USF3-202ENST00000478658 FAM83GA6ND36 823 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 SLC4A2P04920 1241 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 LMNB1P20700 586 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 C6orf118Q5T5N4 469 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 C11orf88Q6PI97 169 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 P3H4Q92791 437 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 KIFC2Q96AC6 838 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 NEUROD6Q96NK8 337 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 IFIH1Q9BYX4 1025 aaKnown RBP6.06□□□□□ -1.44
USF3-202ENST00000478658 NACA2Q9H009 215 aa6.06□□□□□ -1.44
USF3-202ENST00000478658 GNAI2P04899 355 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms