RNA–Protein interactions for RNA: ENST00000474319.1

LSS-208, Transcript of lanosterol synthase, human

TSL 2

Gene LSS, Length 3,601 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSS-208	ENST00000474319	EPC1	Q9H2F5	836 aa		12.51	□□□□□ -0.41
LSS-208	ENST00000474319	HMG20B	Q9P0W2	317 aa		12.51	□□□□□ -0.41
LSS-208	ENST00000474319	HOXB7	P09629	217 aa		12.51	□□□□□ -0.41
LSS-208	ENST00000474319	HSPD1	P10809	573 aa	Known RBP	12.51	□□□□□ -0.41
LSS-208	ENST00000474319	ATP1A3	P13637	1013 aa		12.51	□□□□□ -0.41
LSS-208	ENST00000474319	PHKB	Q93100	1093 aa		12.51	□□□□□ -0.41
LSS-208	ENST00000474319	C8orf76	Q96K31	380 aa		12.51	□□□□□ -0.41
LSS-208	ENST00000474319	ORC3	Q9UBD5	711 aa	Predicted RBP	12.51	□□□□□ -0.41
LSS-208	ENST00000474319	ATP5J	P18859	108 aa		12.5	□□□□□ -0.41
LSS-208	ENST00000474319	DMTN	Q08495	405 aa		12.5	□□□□□ -0.41
LSS-208	ENST00000474319	PDILT	Q8N807	584 aa		12.5	□□□□□ -0.41
LSS-208	ENST00000474319	XPO4	Q9C0E2	1151 aa	Known RBP	12.5	□□□□□ -0.41
LSS-208	ENST00000474319	BABAM1	Q9NWV8	329 aa		12.5	□□□□□ -0.41
LSS-208	ENST00000474319	TOPAZ1	Q8N9V7	1692 aa		12.5	□□□□□ -0.41
LSS-208	ENST00000474319	ZBTB22	O15209	634 aa		12.5	□□□□□ -0.41
LSS-208	ENST00000474319	IQCB1	Q15051	598 aa		12.5	□□□□□ -0.41
LSS-208	ENST00000474319	MICU3	Q86XE3	530 aa		12.5	□□□□□ -0.41
LSS-208	ENST00000474319	MED23	Q9ULK4	1368 aa		12.5	□□□□□ -0.41
LSS-208	ENST00000474319		A0A1B0GUL7	405 aa		12.5	□□□□□ -0.41
LSS-208	ENST00000474319	SMTNL1	A8MU46	457 aa		12.5	□□□□□ -0.41
LSS-208	ENST00000474319	RRP12	Q5JTH9	1297 aa	Known RBP	12.5	□□□□□ -0.41
LSS-208	ENST00000474319	SYNE3	Q6ZMZ3	975 aa		12.5	□□□□□ -0.41
LSS-208	ENST00000474319	CMTR1	Q8N1G2	835 aa	Known RBP	12.5	□□□□□ -0.41
LSS-208	ENST00000474319	ZSWIM4	Q9H7M6	989 aa		12.5	□□□□□ -0.41
LSS-208	ENST00000474319	ELP1	O95163	1332 aa		12.5	□□□□□ -0.41
LSS-208	ENST00000474319	ZNF142	P52746	1687 aa	Predicted RBP	12.5	□□□□□ -0.41
LSS-208	ENST00000474319	PDIA3	P30101	505 aa	Known RBP	12.49	□□□□□ -0.41
LSS-208	ENST00000474319	ERCC6L	Q2NKX8	1250 aa		12.49	□□□□□ -0.41
LSS-208	ENST00000474319	KBTBD3	Q8NAB2	608 aa		12.49	□□□□□ -0.41
LSS-208	ENST00000474319	OSBP2	Q969R2	916 aa		12.49	□□□□□ -0.41
LSS-208	ENST00000474319	FAM89A	Q96GI7	184 aa		12.49	□□□□□ -0.41
LSS-208	ENST00000474319	SNAP23	O00161	211 aa		12.49	□□□□□ -0.41
LSS-208	ENST00000474319	EPB41L2	O43491	1005 aa	Known RBP	12.49	□□□□□ -0.41
LSS-208	ENST00000474319	HELB	Q8NG08	1087 aa	Predicted RBP	12.49	□□□□□ -0.41
LSS-208	ENST00000474319	IL17RA	Q96F46	866 aa		12.49	□□□□□ -0.41
LSS-208	ENST00000474319	CLIC6	Q96NY7	704 aa		12.49	□□□□□ -0.41
LSS-208	ENST00000474319	IDH1	O75874	414 aa	Known RBP	12.49	□□□□□ -0.41
LSS-208	ENST00000474319	GTF2F1	P35269	517 aa	Known RBP eCLIP	12.49	□□□□□ -0.41	1e-10	■■□□□ 13.8
LSS-208	ENST00000474319	SCARF1	Q14162	830 aa		12.49	□□□□□ -0.41
LSS-208	ENST00000474319	TTC39A	Q5SRH9	613 aa		12.49	□□□□□ -0.41
LSS-208	ENST00000474319	DHX40	Q8IX18	779 aa	Known RBP	12.49	□□□□□ -0.41
LSS-208	ENST00000474319	ANO10	Q9NW15	660 aa		12.49	□□□□□ -0.41
LSS-208	ENST00000474319	NFAT5	O94916	1531 aa		12.49	□□□□□ -0.41
LSS-208	ENST00000474319	ADD1	P35611	737 aa	Known RBP	12.48	□□□□□ -0.41
LSS-208	ENST00000474319	RALYL	Q86SE5	291 aa	Known RBP	12.48	□□□□□ -0.41
LSS-208	ENST00000474319	KCNB2	Q92953	911 aa		12.48	□□□□□ -0.41
LSS-208	ENST00000474319	ZFP91	Q96JP5	570 aa	Predicted RBP	12.48	□□□□□ -0.41
LSS-208	ENST00000474319	ZNF396	Q96N95	335 aa	Predicted RBP	12.48	□□□□□ -0.41
LSS-208	ENST00000474319	MAST3	O60307	1309 aa		12.48	□□□□□ -0.41
LSS-208	ENST00000474319	STRCP1	A6NGW2	1772 aa		12.48	□□□□□ -0.41
LSS-208	ENST00000474319	SERPINC1	P01008	464 aa		12.48	□□□□□ -0.41
LSS-208	ENST00000474319	ATP6V1A	P38606	617 aa		12.48	□□□□□ -0.41
LSS-208	ENST00000474319	FAM160A1	Q05DH4	1040 aa		12.48	□□□□□ -0.41
LSS-208	ENST00000474319	SNW1	Q13573	536 aa	Known RBP	12.48	□□□□□ -0.41
LSS-208	ENST00000474319	ILDR1	Q86SU0	546 aa	Predicted RBP	12.48	□□□□□ -0.41
LSS-208	ENST00000474319	MRPS27	Q92552	414 aa	Known RBP	12.48	□□□□□ -0.41
LSS-208	ENST00000474319	HAUS7	Q99871	368 aa		12.48	□□□□□ -0.41
LSS-208	ENST00000474319	MED1	Q15648	1581 aa	Predicted RBP	12.48	□□□□□ -0.41
LSS-208	ENST00000474319	FAM208A	Q9UK61	1670 aa	Known RBP	12.48	□□□□□ -0.41
LSS-208	ENST00000474319	POLR3G	O15318	223 aa	Predicted RBP	12.48	□□□□□ -0.41
LSS-208	ENST00000474319	PRC1	O43663	620 aa		12.48	□□□□□ -0.41
LSS-208	ENST00000474319	GTF2E1	P29083	439 aa	Predicted RBP	12.48	□□□□□ -0.41
LSS-208	ENST00000474319	NFXL1	Q6ZNB6	911 aa		12.48	□□□□□ -0.41
LSS-208	ENST00000474319	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	12.48	□□□□□ -0.41
LSS-208	ENST00000474319	DNAI1	Q9UI46	699 aa		12.48	□□□□□ -0.41
LSS-208	ENST00000474319	COBL	O75128	1261 aa		12.47	□□□□□ -0.41
LSS-208	ENST00000474319	RFX5	P48382	616 aa	Predicted RBP	12.47	□□□□□ -0.41
LSS-208	ENST00000474319	CFAP100	Q494V2	611 aa		12.47	□□□□□ -0.41
LSS-208	ENST00000474319	KMT5B	Q4FZB7	885 aa		12.47	□□□□□ -0.41
LSS-208	ENST00000474319	PTF1A	Q7RTS3	328 aa		12.47	□□□□□ -0.41
LSS-208	ENST00000474319	PFKFB2	O60825	505 aa		12.47	□□□□□ -0.41
LSS-208	ENST00000474319	SLC3A2	P08195	630 aa	Known RBP	12.47	□□□□□ -0.41
LSS-208	ENST00000474319	ZNF827	Q17R98	1081 aa		12.47	□□□□□ -0.41
LSS-208	ENST00000474319	FBXO38	Q6PIJ6	1188 aa		12.47	□□□□□ -0.41
LSS-208	ENST00000474319	NKX2-3	Q8TAU0	364 aa		12.47	□□□□□ -0.41
LSS-208	ENST00000474319	ZKSCAN3	Q9BRR0	538 aa		12.47	□□□□□ -0.41
LSS-208	ENST00000474319	SENP2	Q9HC62	589 aa		12.47	□□□□□ -0.41
LSS-208	ENST00000474319	USP21	Q9UK80	565 aa		12.47	□□□□□ -0.41
LSS-208	ENST00000474319	NWD1	Q149M9	1564 aa		12.47	□□□□□ -0.41
LSS-208	ENST00000474319	RGPD1	P0DJD0	1748 aa		12.47	□□□□□ -0.41
LSS-208	ENST00000474319	NBPF26	B4DH59	902 aa		12.47	□□□□□ -0.41
LSS-208	ENST00000474319	KIF28P	B7ZC32	967 aa		12.47	□□□□□ -0.41
LSS-208	ENST00000474319	FDPS	P14324	419 aa	Known RBP	12.47	□□□□□ -0.41
LSS-208	ENST00000474319	NBPF14	Q5TI25	921 aa		12.47	□□□□□ -0.41
LSS-208	ENST00000474319	NBPF10	Q6P3W6	841 aa	Known RBP	12.47	□□□□□ -0.41
LSS-208	ENST00000474319	NBPF15	Q8N660	670 aa		12.47	□□□□□ -0.41
LSS-208	ENST00000474319	COPRS	Q9NQ92	184 aa		12.47	□□□□□ -0.41
LSS-208	ENST00000474319	CAMTA1	Q9Y6Y1	1673 aa		12.46	□□□□□ -0.41
LSS-208	ENST00000474319	SFPQ	P23246	707 aa	Known RBP eCLIP	12.46	□□□□□ -0.41
LSS-208	ENST00000474319	ZAP70	P43403	619 aa		12.46	□□□□□ -0.41
LSS-208	ENST00000474319	ANKRD7	Q92527	254 aa		12.46	□□□□□ -0.41
LSS-208	ENST00000474319	PUS7L	Q9H0K6	701 aa	Known RBP	12.46	□□□□□ -0.41
LSS-208	ENST00000474319	CEP126	Q9P2H0	1117 aa		12.46	□□□□□ -0.41
LSS-208	ENST00000474319	PXDNL	A1KZ92	1463 aa		12.46	□□□□□ -0.41
LSS-208	ENST00000474319	KDM6A	O15550	1401 aa	Predicted RBP	12.46	□□□□□ -0.41
LSS-208	ENST00000474319	HSPA1L	P34931	641 aa		12.46	□□□□□ -0.42
LSS-208	ENST00000474319	PNOC	Q13519	176 aa		12.46	□□□□□ -0.42
LSS-208	ENST00000474319	LTN1	O94822	1766 aa		12.46	□□□□□ -0.42
LSS-208	ENST00000474319	RGPD2	P0DJD1	1756 aa		12.46	□□□□□ -0.42
LSS-208	ENST00000474319	SPTLC2	O15270	562 aa		12.45	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms