RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 STK36Q9NRP7 1315 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 CCDC69A6NI79 296 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 MCCD1P59942 119 aaPredicted RBP6.23□□□□□ -1.41
SYNE1-220ENST00000471834 LUZP1Q86V48 1076 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 ZNF536O15090 1300 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 TPM4P67936 248 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 STOX1Q6ZVD7 989 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 ZNF579Q8NAF0 562 aaKnown RBP6.23□□□□□ -1.41
SYNE1-220ENST00000471834 CFAP45Q9UL16 551 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 TOM1O60784 492 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 PSMA5P28066 241 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 EPHA10Q5JZY3 1008 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 ANKRD24Q8TF21 1146 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 ZNF830Q96NB3 372 aaPredicted RBP6.23□□□□□ -1.41
SYNE1-220ENST00000471834 CEP89Q96ST8 783 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 NCAPGQ9BPX3 1015 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 NRBP1Q9UHY1 535 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 RBM8AQ9Y5S9 174 aaKnown RBP6.23□□□□□ -1.41
SYNE1-220ENST00000471834 TNRQ92752 1358 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 CCP110O43303 1012 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 BMP6P22004 513 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 CASQ1P31415 396 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 PSEN1P49768 467 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 HNRNPH2P55795 449 aaKnown RBP6.22□□□□□ -1.41
SYNE1-220ENST00000471834 BRAPQ7Z569 592 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 ARHGEF25Q86VW2 580 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 FOXP4Q8IVH2 680 aaPredicted RBP6.22□□□□□ -1.41
SYNE1-220ENST00000471834 TC2NQ8N9U0 490 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 GOLGA5Q8TBA6 731 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 FBXW7Q969H0 707 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 COBLL1Q53SF7 1204 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 BRF1Q92994 677 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 SYTL4Q96C24 671 aaPredicted RBP6.22□□□□□ -1.41
SYNE1-220ENST00000471834 ANO10Q9NW15 660 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 SMC3Q9UQE7 1217 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 MYO1CO00159 1063 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 AMPHP49418 695 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 ALX1Q15699 326 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 NTRK3Q16288 839 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 CEP57L1Q8IYX8 460 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 LRRFIP2Q9Y608 721 aaKnown RBP6.22□□□□□ -1.41
SYNE1-220ENST00000471834 A0A0U1RQG5 324 aaPredicted RBP6.22□□□□□ -1.41
SYNE1-220ENST00000471834 A0A1B0GTH6 734 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 FIGNQ5HY92 759 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 NBPF6Q5VWK0 638 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 MB21D2Q8IYB1 491 aaPredicted RBP6.22□□□□□ -1.41
SYNE1-220ENST00000471834 NBPF4Q96M43 638 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 CNTROBQ8N137 903 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 PDRG1Q9NUG6 133 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 ZRANB1Q9UGI0 708 aa6.22□□□□□ -1.41
SYNE1-220ENST00000471834 PPP6R2O75170 966 aa6.21□□□□□ -1.41
SYNE1-220ENST00000471834 EPB41P11171 864 aaKnown RBP6.21□□□□□ -1.41
SYNE1-220ENST00000471834 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.21□□□□□ -1.414e-6■■■■□ 24.2
SYNE1-220ENST00000471834 DBF4Q9UBU7 674 aaPredicted RBP6.21□□□□□ -1.41
SYNE1-220ENST00000471834 MYSM1Q5VVJ2 828 aa6.21□□□□□ -1.42
SYNE1-220ENST00000471834 USP28Q96RU2 1077 aa6.21□□□□□ -1.42
SYNE1-220ENST00000471834 GDPD2Q9HCC8 539 aa6.21□□□□□ -1.42
SYNE1-220ENST00000471834 RFX1P22670 979 aa6.21□□□□□ -1.42
SYNE1-220ENST00000471834 HOXC9P31274 260 aa6.21□□□□□ -1.42
SYNE1-220ENST00000471834 ZMYM1Q5SVZ6 1142 aa6.21□□□□□ -1.42
SYNE1-220ENST00000471834 CEP135Q66GS9 1140 aa6.21□□□□□ -1.42
SYNE1-220ENST00000471834 MAGEC3Q8TD91 643 aa6.21□□□□□ -1.42
SYNE1-220ENST00000471834 CCDC51Q96ER9 411 aa6.21□□□□□ -1.42
SYNE1-220ENST00000471834 ALS2Q96Q42 1657 aa6.21□□□□□ -1.42
SYNE1-220ENST00000471834 RAD51AP2Q09MP3 1159 aa6.21□□□□□ -1.42
SYNE1-220ENST00000471834 PPP1R13BQ96KQ4 1090 aa6.21□□□□□ -1.42
SYNE1-220ENST00000471834 HPS5Q9UPZ3 1129 aa6.21□□□□□ -1.42
SYNE1-220ENST00000471834 ACTN2P35609 894 aa6.21□□□□□ -1.42
SYNE1-220ENST00000471834 CORO7P57737 925 aa6.21□□□□□ -1.42
SYNE1-220ENST00000471834 CDK17Q00537 523 aa6.21□□□□□ -1.42
SYNE1-220ENST00000471834 DDR1Q08345 913 aa6.21□□□□□ -1.42
SYNE1-220ENST00000471834 MREGQ8N565 214 aa6.21□□□□□ -1.42
SYNE1-220ENST00000471834 KBTBD3Q8NAB2 608 aa6.21□□□□□ -1.42
SYNE1-220ENST00000471834 DDX11Q96FC9 970 aa6.21□□□□□ -1.42
SYNE1-220ENST00000471834 ADAM21Q9UKJ8 722 aa6.21□□□□□ -1.42
SYNE1-220ENST00000471834 ZKSCAN1P17029 563 aaPredicted RBP6.2□□□□□ -1.42
SYNE1-220ENST00000471834 PTPN12Q05209 780 aaKnown RBP6.2□□□□□ -1.42
SYNE1-220ENST00000471834 GRM1Q13255 1194 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 PTPN14Q15678 1187 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 ANO6Q4KMQ2 910 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 IP6K1Q92551 441 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 MRPS27Q92552 414 aaKnown RBP6.2□□□□□ -1.42
SYNE1-220ENST00000471834 RREB1Q92766 1687 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 A0A0D9SFI3 127 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 ARHGAP25P42331 645 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 TXLNBQ8N3L3 684 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 NEUROD6Q96NK8 337 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 PANX2Q96RD6 677 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 GOLPH3LQ9H4A5 285 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 MED4Q9NPJ6 270 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 MKRN1Q9UHC7 482 aaKnown RBP6.2□□□□□ -1.42
SYNE1-220ENST00000471834 ZHX1Q9UKY1 873 aaPredicted RBP6.2□□□□□ -1.42
SYNE1-220ENST00000471834 PRLRP16471 622 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 TNFRSF8P28908 595 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 SKOR1P84550 965 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 CUL4BQ13620 913 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 DHX32Q7L7V1 743 aaKnown RBP6.2□□□□□ -1.42
SYNE1-220ENST00000471834 HAUS7Q99871 368 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 ANKZF1Q9H8Y5 726 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 PCDHA7Q9UN72 937 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms