RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 FKBP1AP62942 108 aaKnown RBP34.51■■■■□ 3.12
SMARCC1-203ENST00000454240 ZBTB22O15209 634 aa34.5■■■■□ 3.11
SMARCC1-203ENST00000454240 CCDC102BQ68D86 513 aa34.5■■■■□ 3.11
SMARCC1-203ENST00000454240 USP50Q70EL3 339 aaPredicted RBP34.5■■■■□ 3.11
SMARCC1-203ENST00000454240 EXOC6Q8TAG9 804 aa34.5■■■■□ 3.11
SMARCC1-203ENST00000454240 RAB11FIP3O75154 756 aa34.49■■■■□ 3.11
SMARCC1-203ENST00000454240 PHKA1P46020 1223 aa34.49■■■■□ 3.11
SMARCC1-203ENST00000454240 CERS5Q8N5B7 392 aa34.49■■■■□ 3.11
SMARCC1-203ENST00000454240 RBM46Q8TBY0 533 aaKnown RBP34.49■■■■□ 3.11
SMARCC1-203ENST00000454240 RHPN1Q8TCX5 695 aa34.49■■■■□ 3.11
SMARCC1-203ENST00000454240 JAG2Q9Y219 1238 aa34.49■■■■□ 3.11
SMARCC1-203ENST00000454240 FRAT2O75474 233 aaPredicted RBP34.48■■■■□ 3.11
SMARCC1-203ENST00000454240 POTEIP0CG38 1075 aa34.48■■■■□ 3.11
SMARCC1-203ENST00000454240 POTEJP0CG39 1038 aa34.48■■■■□ 3.11
SMARCC1-203ENST00000454240 ZNF280AP59817 542 aaPredicted RBP34.48■■■■□ 3.11
SMARCC1-203ENST00000454240 USP17L8P0C7I0 530 aa34.47■■■■□ 3.11
SMARCC1-203ENST00000454240 EAPPQ56P03 285 aaPredicted RBP34.47■■■■□ 3.11
SMARCC1-203ENST00000454240 KIF1BPQ96EK5 621 aa34.47■■■■□ 3.11
SMARCC1-203ENST00000454240 GNL3LQ9NVN8 582 aaKnown RBP34.47■■■■□ 3.11
SMARCC1-203ENST00000454240 EAF2Q96CJ1 260 aaPredicted RBP34.46■■■■□ 3.11
SMARCC1-203ENST00000454240 DCTPP1Q9H773 170 aa34.46■■■■□ 3.11
SMARCC1-203ENST00000454240 LDHDQ86WU2 507 aa34.45■■■■□ 3.11
SMARCC1-203ENST00000454240 SEMA3EO15041 775 aa34.44■■■■□ 3.1
SMARCC1-203ENST00000454240 MMP14P50281 582 aa34.44■■■■□ 3.1
SMARCC1-203ENST00000454240 CHAF1AQ13111 956 aaPredicted RBP34.44■■■■□ 3.1
SMARCC1-203ENST00000454240 MFSD14BQ5SR56 506 aa34.44■■■■□ 3.1
SMARCC1-203ENST00000454240 SAMD7Q7Z3H4 446 aa34.44■■■■□ 3.1
SMARCC1-203ENST00000454240 TRPM4Q8TD43 1214 aa34.44■■■■□ 3.1
SMARCC1-203ENST00000454240 HIRAP54198 1017 aaPredicted RBP34.43■■■■□ 3.1
SMARCC1-203ENST00000454240 KIAA0825Q8IV33 1275 aa34.43■■■■□ 3.1
SMARCC1-203ENST00000454240 TBC1D22AQ8WUA7 517 aa34.43■■■■□ 3.1
SMARCC1-203ENST00000454240 DBNDD2Q9BQY9 259 aa34.43■■■■□ 3.1
SMARCC1-203ENST00000454240 COL1A1P02452 1464 aaPredicted RBP34.43■■■■□ 3.1
SMARCC1-203ENST00000454240 APBB1O00213 710 aa34.42■■■■□ 3.1
SMARCC1-203ENST00000454240 EGFRP00533 1210 aa34.42■■■■□ 3.1
SMARCC1-203ENST00000454240 GORABQ5T7V8 394 aa34.42■■■■□ 3.1
SMARCC1-203ENST00000454240 IL1RAPL2Q9NP60 686 aa34.42■■■■□ 3.1
SMARCC1-203ENST00000454240 DENND2AQ9ULE3 1009 aa34.42■■■■□ 3.1
SMARCC1-203ENST00000454240 IRX6P78412 446 aaPredicted RBP34.41■■■■□ 3.1
SMARCC1-203ENST00000454240 TBC1D10BQ4KMP7 808 aaPredicted RBP34.41■■■■□ 3.1
SMARCC1-203ENST00000454240 OGFOD1Q8N543 542 aa34.41■■■■□ 3.1
SMARCC1-203ENST00000454240 SMC1BQ8NDV3 1235 aa34.41■■■■□ 3.1
SMARCC1-203ENST00000454240 CCDC8Q9H0W5 538 aaPredicted RBP34.41■■■■□ 3.1
SMARCC1-203ENST00000454240 DBNLQ9UJU6 430 aaKnown RBP34.41■■■■□ 3.1
SMARCC1-203ENST00000454240 C1QTNF8P60827 252 aa34.4■■■■□ 3.1
SMARCC1-203ENST00000454240 FSTL1Q12841 308 aa34.4■■■■□ 3.1
SMARCC1-203ENST00000454240 CHADLQ6NUI6 762 aa34.4■■■■□ 3.1
SMARCC1-203ENST00000454240 MYOZ2Q9NPC6 264 aa34.4■■■■□ 3.1
SMARCC1-203ENST00000454240 ARID4AP29374 1257 aaPredicted RBP34.39■■■■□ 3.1
SMARCC1-203ENST00000454240 RBM26Q5T8P6 1007 aaKnown RBP34.39■■■■□ 3.1
SMARCC1-203ENST00000454240 CLASRPQ8N2M8 674 aaKnown RBP34.39■■■■□ 3.1
SMARCC1-203ENST00000454240 WDR66Q8TBY9 1149 aa34.39■■■■□ 3.1
SMARCC1-203ENST00000454240 CLEC11AQ9Y240 323 aa34.39■■■■□ 3.1
SMARCC1-203ENST00000454240 PDS5AQ29RF7 1337 aaKnown RBP34.38■■■■□ 3.09
SMARCC1-203ENST00000454240 HDAC1Q13547 482 aaPredicted RBP34.38■■■■□ 3.09
SMARCC1-203ENST00000454240 RASGRF1Q13972 1273 aa34.38■■■■□ 3.09
SMARCC1-203ENST00000454240 KIF4BQ2VIQ3 1234 aa34.38■■■■□ 3.09
SMARCC1-203ENST00000454240 AACSQ86V21 672 aa34.38■■■■□ 3.09
SMARCC1-203ENST00000454240 TLR7Q9NYK1 1049 aaKnown RBP34.38■■■■□ 3.09
SMARCC1-203ENST00000454240 PGAP2Q9UHJ9 254 aa34.38■■■■□ 3.09
SMARCC1-203ENST00000454240 HDAC9Q9UKV0 1011 aa34.38■■■■□ 3.09
SMARCC1-203ENST00000454240 ZC3H15Q8WU90 426 aaKnown RBP34.37■■■■□ 3.09
SMARCC1-203ENST00000454240 LRRCC1Q9C099 1032 aa34.37■■■■□ 3.09
SMARCC1-203ENST00000454240 AKAP11Q9UKA4 1901 aa34.37■■■■□ 3.09
SMARCC1-203ENST00000454240 F8W031 263 aaPredicted RBP34.36■■■■□ 3.09
SMARCC1-203ENST00000454240 UQCRFS1P1P0C7P4 283 aa34.36■■■■□ 3.09
SMARCC1-203ENST00000454240 GRIK5Q16478 980 aa34.36■■■■□ 3.09
SMARCC1-203ENST00000454240 CCDC158Q5M9N0 1113 aa34.36■■■■□ 3.09
SMARCC1-203ENST00000454240 POLR2AP24928 1970 aaKnown RBP34.36■■■■□ 3.09
SMARCC1-203ENST00000454240 ZNF512BQ96KM6 892 aaPredicted RBP34.35■■■■□ 3.09
SMARCC1-203ENST00000454240 SUGT1Q9Y2Z0 365 aa34.35■■■■□ 3.09
SMARCC1-203ENST00000454240 SALL1Q9NSC2 1324 aa34.34■■■■□ 3.09
SMARCC1-203ENST00000454240 HMG20BQ9P0W2 317 aa34.34■■■■□ 3.09
SMARCC1-203ENST00000454240 TTF2Q9UNY4 1162 aaKnown RBP34.34■■■■□ 3.09
SMARCC1-203ENST00000454240 TTC39AQ5SRH9 613 aa34.33■■■■□ 3.09
SMARCC1-203ENST00000454240 MCAMP43121 646 aa34.32■■■■□ 3.08
SMARCC1-203ENST00000454240 SCARF1Q14162 830 aa34.32■■■■□ 3.08
SMARCC1-203ENST00000454240 MAP1SQ66K74 1059 aaPredicted RBP34.32■■■■□ 3.08
SMARCC1-203ENST00000454240 MTMR14Q8NCE2 650 aa34.32■■■■□ 3.08
SMARCC1-203ENST00000454240 SMARCA5O60264 1052 aaPredicted RBP34.31■■■■□ 3.08
SMARCC1-203ENST00000454240 SPATA5Q8NB90 893 aa34.31■■■■□ 3.08
SMARCC1-203ENST00000454240 ZBED3Q96IU2 234 aaPredicted RBP34.31■■■■□ 3.08
SMARCC1-203ENST00000454240 IFIT2P09913 472 aaKnown RBP34.3■■■■□ 3.08
SMARCC1-203ENST00000454240 CNTROBQ8N137 903 aa34.3■■■■□ 3.08
SMARCC1-203ENST00000454240 WNT10BO00744 389 aa34.29■■■■□ 3.08
SMARCC1-203ENST00000454240 ITGBL1O95965 494 aaPredicted RBP34.29■■■■□ 3.08
SMARCC1-203ENST00000454240 NBPF9Q3BBW0 867 aa34.29■■■■□ 3.08
SMARCC1-203ENST00000454240 PI16Q6UXB8 463 aa34.29■■■■□ 3.08
SMARCC1-203ENST00000454240 SERPINA10Q9UK55 444 aa34.29■■■■□ 3.08
SMARCC1-203ENST00000454240 ECM29Q5VYK3 1845 aa34.29■■■■□ 3.08
SMARCC1-203ENST00000454240 HDLBPQ00341 1268 aaKnown RBP34.28■■■■□ 3.08
SMARCC1-203ENST00000454240 CFAP100Q494V2 611 aa34.28■■■■□ 3.08
SMARCC1-203ENST00000454240 ZGPATQ8N5A5 531 aaKnown RBP34.28■■■■□ 3.08
SMARCC1-203ENST00000454240 MRIQ9BWK5 157 aa34.28■■■■□ 3.08
SMARCC1-203ENST00000454240 RWDD1Q9H446 243 aaPredicted RBP34.28■■■■□ 3.08
SMARCC1-203ENST00000454240 ASTN2O75129 1339 aaPredicted RBP34.28■■■■□ 3.08
SMARCC1-203ENST00000454240 DLGAP5Q15398 846 aa34.27■■■■□ 3.08
SMARCC1-203ENST00000454240 GCC1Q96CN9 775 aa34.27■■■■□ 3.08
SMARCC1-203ENST00000454240 PRDX5P30044 214 aa34.26■■■■□ 3.08
SMARCC1-203ENST00000454240 BCL11AQ9H165 835 aa34.26■■■■□ 3.08
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms