RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 CNTNAP1P78357 1384 aa6.75□□□□□ -1.33
PTPN4-206ENST00000441089 PODNQ7Z5L7 613 aa6.75□□□□□ -1.33
PTPN4-206ENST00000441089 GAS2L1Q99501 681 aaPredicted RBP6.75□□□□□ -1.33
PTPN4-206ENST00000441089 SUV39H2Q9H5I1 410 aa6.75□□□□□ -1.33
PTPN4-206ENST00000441089 NLRP2Q9NX02 1062 aa6.75□□□□□ -1.33
PTPN4-206ENST00000441089 MEN1O00255 615 aa6.74□□□□□ -1.33
PTPN4-206ENST00000441089 MX2P20592 715 aa6.74□□□□□ -1.33
PTPN4-206ENST00000441089 L3MBTL2Q969R5 705 aa6.74□□□□□ -1.33
PTPN4-206ENST00000441089 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.74□□□□□ -1.33
PTPN4-206ENST00000441089 DYRK1BQ9Y463 629 aa6.74□□□□□ -1.33
PTPN4-206ENST00000441089 GPSM3Q9Y4H4 160 aa6.74□□□□□ -1.33
PTPN4-206ENST00000441089 C4BP0C0L5 1744 aa6.73□□□□□ -1.33
PTPN4-206ENST00000441089 TONSLQ96HA7 1378 aa6.73□□□□□ -1.33
PTPN4-206ENST00000441089 A0A0G2JLW4 131 aa6.73□□□□□ -1.33
PTPN4-206ENST00000441089 A0A1W2PRU2 124 aa6.73□□□□□ -1.33
PTPN4-206ENST00000441089 HSPA8P11142 646 aaKnown RBP6.73□□□□□ -1.33
PTPN4-206ENST00000441089 MAP2K1Q02750 393 aaPredicted RBP6.73□□□□□ -1.33
PTPN4-206ENST00000441089 PPP2R2DQ66LE6 453 aa6.73□□□□□ -1.33
PTPN4-206ENST00000441089 DZIP3Q86Y13 1208 aaKnown RBP6.73□□□□□ -1.33
PTPN4-206ENST00000441089 DDX54Q8TDD1 881 aaKnown RBP6.73□□□□□ -1.33
PTPN4-206ENST00000441089 GMCL1Q96IK5 515 aa6.73□□□□□ -1.33
PTPN4-206ENST00000441089 TIMELESSQ9UNS1 1208 aa6.73□□□□□ -1.33
PTPN4-206ENST00000441089 NSD2O96028 1365 aa6.72□□□□□ -1.33
PTPN4-206ENST00000441089 FAM208AQ9UK61 1670 aaKnown RBP6.72□□□□□ -1.33
PTPN4-206ENST00000441089 CASP8AP2Q9UKL3 1982 aa6.72□□□□□ -1.33
PTPN4-206ENST00000441089 GLTPD2A6NH11 291 aa6.72□□□□□ -1.33
PTPN4-206ENST00000441089 ATP5J2-PTCD1G3V325 749 aa6.72□□□□□ -1.33
PTPN4-206ENST00000441089 SSFA2P28290 1259 aa6.72□□□□□ -1.33
PTPN4-206ENST00000441089 SCTRP47872 440 aa6.72□□□□□ -1.33
PTPN4-206ENST00000441089 UBAP2LQ14157 1087 aaKnown RBP6.72□□□□□ -1.33
PTPN4-206ENST00000441089 OXCT2Q9BYC2 517 aaPredicted RBP6.72□□□□□ -1.33
PTPN4-206ENST00000441089 GRIP2Q9C0E4 1043 aa6.72□□□□□ -1.33
PTPN4-206ENST00000441089 TOGARAM1Q9Y4F4 1720 aa6.72□□□□□ -1.33
PTPN4-206ENST00000441089 LTN1O94822 1766 aa6.72□□□□□ -1.33
PTPN4-206ENST00000441089 CEP290O15078 2479 aa6.71□□□□□ -1.33
PTPN4-206ENST00000441089 MMP10P09238 476 aa6.71□□□□□ -1.34
PTPN4-206ENST00000441089 NBPF10Q6P3W6 841 aaKnown RBP6.71□□□□□ -1.34
PTPN4-206ENST00000441089 LINC00114Q6XXX2 140 aa6.71□□□□□ -1.34
PTPN4-206ENST00000441089 KRTAP1-3Q8IUG1 177 aa6.71□□□□□ -1.34
PTPN4-206ENST00000441089 NBPF15Q8N660 670 aa6.71□□□□□ -1.34
PTPN4-206ENST00000441089 PIM2Q9P1W9 311 aa6.71□□□□□ -1.34
PTPN4-206ENST00000441089 NFAT5O94916 1531 aa6.71□□□□□ -1.34
PTPN4-206ENST00000441089 DICER1Q9UPY3 1922 aaKnown RBP6.7□□□□□ -1.34
PTPN4-206ENST00000441089 AP1G2O75843 785 aa6.7□□□□□ -1.34
PTPN4-206ENST00000441089 DPEP1P16444 411 aa6.7□□□□□ -1.34
PTPN4-206ENST00000441089 SRPK2P78362 688 aaKnown RBP6.7□□□□□ -1.34
PTPN4-206ENST00000441089 DALRD3Q5D0E6 543 aaKnown RBP6.7□□□□□ -1.34
PTPN4-206ENST00000441089 GCC1Q96CN9 775 aa6.7□□□□□ -1.34
PTPN4-206ENST00000441089 GOPCQ9HD26 462 aa6.7□□□□□ -1.34
PTPN4-206ENST00000441089 CCDC87Q9NVE4 849 aa6.7□□□□□ -1.34
PTPN4-206ENST00000441089 TIAM2Q8IVF5 1701 aa6.7□□□□□ -1.34
PTPN4-206ENST00000441089 C2CD2LO14523 706 aa6.69□□□□□ -1.34
PTPN4-206ENST00000441089 LMNB1P20700 586 aa6.69□□□□□ -1.34
PTPN4-206ENST00000441089 GPC1P35052 558 aa6.69□□□□□ -1.34
PTPN4-206ENST00000441089 FOXR1Q6PIV2 292 aa6.69□□□□□ -1.34
PTPN4-206ENST00000441089 NLGN1Q8N2Q7 840 aa6.69□□□□□ -1.34
PTPN4-206ENST00000441089 TRIM34Q9BYJ4 488 aa6.69□□□□□ -1.34
PTPN4-206ENST00000441089 NUCKS1Q9H1E3 243 aaKnown RBP6.69□□□□□ -1.34
PTPN4-206ENST00000441089 TTC21AQ8NDW8 1320 aa6.69□□□□□ -1.34
PTPN4-206ENST00000441089 KDM6AO15550 1401 aaPredicted RBP6.68□□□□□ -1.34
PTPN4-206ENST00000441089 C4AP0C0L4 1744 aa6.68□□□□□ -1.34
PTPN4-206ENST00000441089 TMEM88BA6NKF7 163 aa6.68□□□□□ -1.34
PTPN4-206ENST00000441089 C1QTNF9BB2RNN3 333 aa6.68□□□□□ -1.34
PTPN4-206ENST00000441089 USP17L8P0C7I0 530 aa6.68□□□□□ -1.34
PTPN4-206ENST00000441089 CHRNA4P43681 627 aa6.68□□□□□ -1.34
PTPN4-206ENST00000441089 ERVK-9P63128 1117 aa6.68□□□□□ -1.34
PTPN4-206ENST00000441089 NEUROD2Q15784 382 aa6.68□□□□□ -1.34
PTPN4-206ENST00000441089 DCAF11Q8TEB1 546 aa6.68□□□□□ -1.34
PTPN4-206ENST00000441089 ANKRD24Q8TF21 1146 aa6.68□□□□□ -1.34
PTPN4-206ENST00000441089 SMARCC1Q92922 1105 aaPredicted RBP6.68□□□□□ -1.34
PTPN4-206ENST00000441089 TRERF1Q96PN7 1200 aa6.68□□□□□ -1.34
PTPN4-206ENST00000441089 ITGB4P16144 1822 aa6.68□□□□□ -1.34
PTPN4-206ENST00000441089 PALLDQ8WX93 1383 aa6.68□□□□□ -1.34
PTPN4-206ENST00000441089 SPATA31C2B4DYI2 1134 aa6.67□□□□□ -1.34
PTPN4-206ENST00000441089 H7C1W4 665 aa6.67□□□□□ -1.34
PTPN4-206ENST00000441089 TMF1P82094 1093 aa6.67□□□□□ -1.34
PTPN4-206ENST00000441089 GRIN2CQ14957 1233 aa6.67□□□□□ -1.34
PTPN4-206ENST00000441089 CD163Q86VB7 1156 aa6.67□□□□□ -1.34
PTPN4-206ENST00000441089 ZCRB1Q8TBF4 217 aaKnown RBP6.67□□□□□ -1.34
PTPN4-206ENST00000441089 GPAMQ9HCL2 828 aa6.67□□□□□ -1.34
PTPN4-206ENST00000441089 CABP1Q9NZU7 370 aa6.67□□□□□ -1.34
PTPN4-206ENST00000441089 SCN4AP35499 1836 aa6.66□□□□□ -1.34
PTPN4-206ENST00000441089 RASSF10A6NK89 507 aa6.66□□□□□ -1.34
PTPN4-206ENST00000441089 KCNA3P22001 575 aa6.66□□□□□ -1.34
PTPN4-206ENST00000441089 CLN3Q13286 438 aa6.66□□□□□ -1.34
PTPN4-206ENST00000441089 DEFB115Q30KQ5 88 aa6.66□□□□□ -1.34
PTPN4-206ENST00000441089 SMIM5Q71RC9 77 aa6.66□□□□□ -1.34
PTPN4-206ENST00000441089 MCOLN1Q9GZU1 580 aa6.66□□□□□ -1.34
PTPN4-206ENST00000441089 OSBPL3Q9H4L5 887 aa6.66□□□□□ -1.34
PTPN4-206ENST00000441089 ARHGEF10LQ9HCE6 1279 aa6.66□□□□□ -1.34
PTPN4-206ENST00000441089 TIMMDC1Q9NPL8 285 aa6.66□□□□□ -1.34
PTPN4-206ENST00000441089 RAB6BQ9NRW1 208 aa6.66□□□□□ -1.34
PTPN4-206ENST00000441089 HCN2Q9UL51 889 aa6.66□□□□□ -1.34
PTPN4-206ENST00000441089 MKL2Q9ULH7 1088 aa6.66□□□□□ -1.34
PTPN4-206ENST00000441089 PARP3Q9Y6F1 533 aa6.66□□□□□ -1.34
PTPN4-206ENST00000441089 TTC21BQ7Z4L5 1316 aa6.66□□□□□ -1.34
PTPN4-206ENST00000441089 PASKQ96RG2 1323 aa6.66□□□□□ -1.34
PTPN4-206ENST00000441089 TRIOBPQ9H2D6 2365 aa6.66□□□□□ -1.34
PTPN4-206ENST00000441089 MAP2P11137 1827 aaKnown RBP6.65□□□□□ -1.34
PTPN4-206ENST00000441089 F11P03951 625 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms