RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 LIG3P49916 1009 aa9.07□□□□□ -0.96
USP54-206ENST00000433394 SNAP47Q5SQN1 464 aa9.07□□□□□ -0.96
USP54-206ENST00000433394 TTBK2Q6IQ55 1244 aa9.07□□□□□ -0.96
USP54-206ENST00000433394 NPAS3Q8IXF0 933 aa9.07□□□□□ -0.96
USP54-206ENST00000433394 SMG9Q9H0W8 520 aaKnown RBP9.07□□□□□ -0.96
USP54-206ENST00000433394 MBIPQ9NS73 344 aa9.07□□□□□ -0.96
USP54-206ENST00000433394 FRRS1LQ9P0K9 344 aa9.07□□□□□ -0.96
USP54-206ENST00000433394 NXF1Q9UBU9 619 aaKnown RBP9.07□□□□□ -0.96
USP54-206ENST00000433394 NFKBIEO00221 500 aa9.06□□□□□ -0.96
USP54-206ENST00000433394 STK10O94804 968 aaKnown RBP9.06□□□□□ -0.96
USP54-206ENST00000433394 RPS26P62854 115 aaKnown RBP9.06□□□□□ -0.96
USP54-206ENST00000433394 LRRC14Q15048 493 aa9.06□□□□□ -0.96
USP54-206ENST00000433394 FAM117BQ6P1L5 589 aa9.06□□□□□ -0.96
USP54-206ENST00000433394 NECAB3Q96P71 396 aaPredicted RBP9.06□□□□□ -0.96
USP54-206ENST00000433394 SEC31BQ9NQW1 1179 aa9.06□□□□□ -0.96
USP54-206ENST00000433394 GDF2Q9UK05 429 aaPredicted RBP9.06□□□□□ -0.96
USP54-206ENST00000433394 HCN2Q9UL51 889 aa9.06□□□□□ -0.96
USP54-206ENST00000433394 ELOA3CA0A087WX78 387 aaPredicted RBP9.05□□□□□ -0.96
USP54-206ENST00000433394 ELOA3DA6NLF2 546 aaPredicted RBP9.05□□□□□ -0.96
USP54-206ENST00000433394 ADARB2-AS1A8MUL3 147 aa9.05□□□□□ -0.96
USP54-206ENST00000433394 RGS9O75916 674 aaPredicted RBP9.05□□□□□ -0.96
USP54-206ENST00000433394 SSBP05455 408 aaKnown RBP eCLIP9.05□□□□□ -0.96
USP54-206ENST00000433394 PCDH1Q08174 1060 aa9.05□□□□□ -0.96
USP54-206ENST00000433394 COL9A2Q14055 689 aaPredicted RBP9.05□□□□□ -0.96
USP54-206ENST00000433394 ELOA3BQ3SY89 546 aa9.05□□□□□ -0.96
USP54-206ENST00000433394 GOLGA6L1Q8N7Z2 621 aa9.05□□□□□ -0.96
USP54-206ENST00000433394 ELOA3Q8NG57 546 aa9.05□□□□□ -0.96
USP54-206ENST00000433394 SEC16BQ96JE7 1060 aa9.05□□□□□ -0.96
USP54-206ENST00000433394 POP1Q99575 1024 aaKnown RBP9.05□□□□□ -0.96
USP54-206ENST00000433394 EMILIN2Q9BXX0 1053 aa9.05□□□□□ -0.96
USP54-206ENST00000433394 NEURL1BA8MQ27 555 aa9.04□□□□□ -0.96
USP54-206ENST00000433394 CELA3AP09093 270 aa9.04□□□□□ -0.96
USP54-206ENST00000433394 ARL4DP49703 201 aa9.04□□□□□ -0.96
USP54-206ENST00000433394 TREML4Q6UXN2 200 aa9.04□□□□□ -0.96
USP54-206ENST00000433394 SLC16A10Q8TF71 515 aa9.04□□□□□ -0.96
USP54-206ENST00000433394 ZNF296Q8WUU4 475 aaPredicted RBP9.04□□□□□ -0.96
USP54-206ENST00000433394 HHIPQ96QV1 700 aa9.04□□□□□ -0.96
USP54-206ENST00000433394 LACRTQ9GZZ8 138 aa9.04□□□□□ -0.96
USP54-206ENST00000433394 C2CD2LO14523 706 aa9.03□□□□□ -0.96
USP54-206ENST00000433394 ATF4P18848 351 aaPredicted RBP9.03□□□□□ -0.96
USP54-206ENST00000433394 CDC27P30260 824 aa9.03□□□□□ -0.96
USP54-206ENST00000433394 LMNB2Q03252 620 aa9.03□□□□□ -0.96
USP54-206ENST00000433394 PERM1Q5SV97 790 aa9.03□□□□□ -0.96
USP54-206ENST00000433394 PCNX4Q63HM2 1172 aa9.03□□□□□ -0.96
USP54-206ENST00000433394 PSAPL1Q6NUJ1 521 aa9.03□□□□□ -0.96
USP54-206ENST00000433394 PHC3Q8NDX5 983 aa9.03□□□□□ -0.96
USP54-206ENST00000433394 RASGRP4Q8TDF6 673 aa9.03□□□□□ -0.96
USP54-206ENST00000433394 TRIM56Q9BRZ2 755 aaKnown RBP9.03□□□□□ -0.96
USP54-206ENST00000433394 MUC3BQ9H195 1237 aa9.03□□□□□ -0.96
USP54-206ENST00000433394 MIR1-1HGQ9H1L0 117 aa9.03□□□□□ -0.96
USP54-206ENST00000433394 STRIP2Q9ULQ0 834 aa9.03□□□□□ -0.96
USP54-206ENST00000433394 CYP8B1Q9UNU6 501 aa9.03□□□□□ -0.96
USP54-206ENST00000433394 LOC105371045A0A1W2PR82 267 aa9.02□□□□□ -0.97
USP54-206ENST00000433394 F6X3S4 739 aa9.02□□□□□ -0.97
USP54-206ENST00000433394 ENC1O14682 589 aa9.02□□□□□ -0.97
USP54-206ENST00000433394 IKBKEQ14164 716 aa9.02□□□□□ -0.97
USP54-206ENST00000433394 LCE2AQ5TA79 106 aaPredicted RBP9.02□□□□□ -0.97
USP54-206ENST00000433394 GDF6Q6KF10 455 aaPredicted RBP9.02□□□□□ -0.97
USP54-206ENST00000433394 AGMOQ6ZNB7 445 aa9.02□□□□□ -0.97
USP54-206ENST00000433394 CPLX3Q8WVH0 158 aa9.02□□□□□ -0.97
USP54-206ENST00000433394 DHX38Q92620 1227 aaKnown RBP9.02□□□□□ -0.97
USP54-206ENST00000433394 TTC9Q92623 222 aa9.02□□□□□ -0.97
USP54-206ENST00000433394 NT5C1AQ9BXI3 368 aa9.02□□□□□ -0.97
USP54-206ENST00000433394 CBX8Q9HC52 389 aa9.02□□□□□ -0.97
USP54-206ENST00000433394 ADAMTS1Q9UHI8 967 aa9.02□□□□□ -0.97
USP54-206ENST00000433394 ROBO2Q9HCK4 1378 aa9.01□□□□□ -0.97
USP54-206ENST00000433394 BPNT1O95861 308 aa9.01□□□□□ -0.97
USP54-206ENST00000433394 PF4P02776 101 aa9.01□□□□□ -0.97
USP54-206ENST00000433394 NME2P22392 152 aa9.01□□□□□ -0.97
USP54-206ENST00000433394 FAM160A1Q05DH4 1040 aa9.01□□□□□ -0.97
USP54-206ENST00000433394 APOBRQ0VD83 1088 aa9.01□□□□□ -0.97
USP54-206ENST00000433394 CAMK2GQ13555 558 aaPredicted RBP9.01□□□□□ -0.97
USP54-206ENST00000433394 GOLM1Q8NBJ4 401 aa9.01□□□□□ -0.97
USP54-206ENST00000433394 DNAJC2Q99543 621 aaKnown RBP9.01□□□□□ -0.97
USP54-206ENST00000433394 ADAM19Q9H013 955 aa9.01□□□□□ -0.97
USP54-206ENST00000433394 GGA1Q9UJY5 639 aa9.01□□□□□ -0.97
USP54-206ENST00000433394 B3GALT4O96024 378 aa9□□□□□ -0.97
USP54-206ENST00000433394 ZNF157P51786 506 aaPredicted RBP9□□□□□ -0.97
USP54-206ENST00000433394 AP3B2Q13367 1082 aa9□□□□□ -0.97
USP54-206ENST00000433394 KANK3Q6NY19 840 aa9□□□□□ -0.97
USP54-206ENST00000433394 CCDC84Q86UT8 332 aaPredicted RBP9□□□□□ -0.97
USP54-206ENST00000433394 CKAP2LQ8IYA6 745 aa9□□□□□ -0.97
USP54-206ENST00000433394 RHOVQ96L33 236 aa9□□□□□ -0.97
USP54-206ENST00000433394 SOX13Q9UN79 622 aa9□□□□□ -0.97
USP54-206ENST00000433394 TLR6Q9Y2C9 796 aa9□□□□□ -0.97
USP54-206ENST00000433394 R3HCC1Q9Y3T6 440 aaKnown RBP9□□□□□ -0.97
USP54-206ENST00000433394 IGF1RP08069 1367 aa8.99□□□□□ -0.97
USP54-206ENST00000433394 MAP3K10Q02779 954 aa8.99□□□□□ -0.97
USP54-206ENST00000433394 NFX1Q12986 1120 aaKnown RBP8.99□□□□□ -0.97
USP54-206ENST00000433394 LLGL2Q6P1M3 1020 aa8.99□□□□□ -0.97
USP54-206ENST00000433394 SLCO4C1Q6ZQN7 724 aa8.99□□□□□ -0.97
USP54-206ENST00000433394 SULF2Q8IWU5 870 aa8.99□□□□□ -0.97
USP54-206ENST00000433394 TRIM42Q8IWZ5 723 aa8.99□□□□□ -0.97
USP54-206ENST00000433394 NKD1Q969G9 470 aa8.99□□□□□ -0.97
USP54-206ENST00000433394 LPIN3Q9BQK8 851 aa8.99□□□□□ -0.97
USP54-206ENST00000433394 JPH1Q9HDC5 661 aaPredicted RBP8.99□□□□□ -0.97
USP54-206ENST00000433394 TRIM33Q9UPN9 1127 aa8.99□□□□□ -0.97
USP54-206ENST00000433394 EFR3BQ9Y2G0 817 aa8.99□□□□□ -0.97
USP54-206ENST00000433394 H3BRJ5 948 aa8.98□□□□□ -0.97
USP54-206ENST00000433394 CANXP27824 592 aaKnown RBP8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms