RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 MROH7-TTC4A0A0A0MT08 1334 aa11.58□□□□□ -0.56
SS18-203ENST00000415083 A0A1B0GVL5 298 aa11.58□□□□□ -0.56
SS18-203ENST00000415083 UBE2Q2LH0YL09 131 aa11.58□□□□□ -0.56
SS18-203ENST00000415083 RBM6P78332 1123 aaKnown RBP11.58□□□□□ -0.56
SS18-203ENST00000415083 NYAP1Q6ZVC0 841 aa11.58□□□□□ -0.56
SS18-203ENST00000415083 TPM3P06753 285 aa11.57□□□□□ -0.56
SS18-203ENST00000415083 CBX1P83916 185 aa11.57□□□□□ -0.56
SS18-203ENST00000415083 AIFM3Q96NN9 605 aa11.57□□□□□ -0.56
SS18-203ENST00000415083 CWC25Q9NXE8 425 aaPredicted RBP11.57□□□□□ -0.56
SS18-203ENST00000415083 CPDO75976 1380 aa11.57□□□□□ -0.56
SS18-203ENST00000415083 GOLGA6L4A6NEF3 574 aa11.57□□□□□ -0.56
SS18-203ENST00000415083 FGAP02671 866 aa11.57□□□□□ -0.56
SS18-203ENST00000415083 LINC00301Q8NCQ3 95 aa11.57□□□□□ -0.56
SS18-203ENST00000415083 ISCA1Q9BUE6 129 aa11.57□□□□□ -0.56
SS18-203ENST00000415083 CFAP45Q9UL16 551 aa11.57□□□□□ -0.56
SS18-203ENST00000415083 SPDYE4A6NLX3 237 aa11.57□□□□□ -0.56
SS18-203ENST00000415083 IFIT1P09914 478 aaKnown RBP11.57□□□□□ -0.56
SS18-203ENST00000415083 IL15P40933 162 aaPredicted RBP11.57□□□□□ -0.56
SS18-203ENST00000415083 NCAPHQ15003 741 aa11.57□□□□□ -0.56
SS18-203ENST00000415083 DPCR1Q3MIW9 517 aa11.57□□□□□ -0.56
SS18-203ENST00000415083 AXDND1Q5T1B0 1012 aaPredicted RBP11.57□□□□□ -0.56
SS18-203ENST00000415083 MRFAP1L1Q96HT8 127 aa11.57□□□□□ -0.56
SS18-203ENST00000415083 SPATA31A3Q5VYP0 1347 aa11.56□□□□□ -0.56
SS18-203ENST00000415083 FAM160A1Q05DH4 1040 aa11.56□□□□□ -0.56
SS18-203ENST00000415083 MTERF4Q7Z6M4 381 aaKnown RBP11.56□□□□□ -0.56
SS18-203ENST00000415083 SMAP1Q8IYB5 467 aaPredicted RBP11.56□□□□□ -0.56
SS18-203ENST00000415083 FSIP1Q8NA03 581 aa11.56□□□□□ -0.56
SS18-203ENST00000415083 CCDC85AQ96PX6 553 aaPredicted RBP11.56□□□□□ -0.56
SS18-203ENST00000415083 RTEL1Q9NZ71 1219 aa11.56□□□□□ -0.56
SS18-203ENST00000415083 PLEKHG2Q9H7P9 1386 aa11.56□□□□□ -0.56
SS18-203ENST00000415083 FANCGO15287 622 aa11.56□□□□□ -0.56
SS18-203ENST00000415083 WDHD1O75717 1129 aaPredicted RBP11.56□□□□□ -0.56
SS18-203ENST00000415083 CIAO1O76071 339 aa11.56□□□□□ -0.56
SS18-203ENST00000415083 ZAP70P43403 619 aa11.56□□□□□ -0.56
SS18-203ENST00000415083 FBXW7Q969H0 707 aa11.56□□□□□ -0.56
SS18-203ENST00000415083 XAGE2Q96GT9 111 aa11.56□□□□□ -0.56
SS18-203ENST00000415083 COL4A1P02462 1669 aa11.56□□□□□ -0.56
SS18-203ENST00000415083 ITGB4P16144 1822 aa11.56□□□□□ -0.56
SS18-203ENST00000415083 HMGB1P09429 215 aaKnown RBP11.56□□□□□ -0.56
SS18-203ENST00000415083 CSB-PGBD3P0DP91 1061 aa11.56□□□□□ -0.56
SS18-203ENST00000415083 AOPEPQ8N6M6 819 aa11.56□□□□□ -0.56
SS18-203ENST00000415083 LRRN4CLQ8ND94 238 aa11.56□□□□□ -0.56
SS18-203ENST00000415083 MYH3P11055 1940 aa11.55□□□□□ -0.56
SS18-203ENST00000415083 TNNT1P13805 278 aa11.55□□□□□ -0.56
SS18-203ENST00000415083 STX1AQ16623 288 aa11.55□□□□□ -0.56
SS18-203ENST00000415083 INCENPQ9NQS7 918 aa11.55□□□□□ -0.56
SS18-203ENST00000415083 COL5A2P05997 1499 aaPredicted RBP11.55□□□□□ -0.56
SS18-203ENST00000415083 GOLGA6L6A8MZA4 724 aa11.55□□□□□ -0.56
SS18-203ENST00000415083 POLR3DP05423 398 aaPredicted RBP11.55□□□□□ -0.56
SS18-203ENST00000415083 CYB5R4Q7L1T6 521 aa11.55□□□□□ -0.56
SS18-203ENST00000415083 LRP6O75581 1613 aa11.55□□□□□ -0.56
SS18-203ENST00000415083 ARMCX5Q6P1M9 558 aa11.54□□□□□ -0.56
SS18-203ENST00000415083 CCDC191Q8NCU4 936 aa11.54□□□□□ -0.56
SS18-203ENST00000415083 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.54□□□□□ -0.56
SS18-203ENST00000415083 CHD4Q14839 1912 aa11.54□□□□□ -0.56
SS18-203ENST00000415083 MCAMP43121 646 aa11.54□□□□□ -0.56
SS18-203ENST00000415083 FKBP4Q02790 459 aaKnown RBP eCLIP11.54□□□□□ -0.56
SS18-203ENST00000415083 NKX1-1Q15270 411 aaPredicted RBP11.54□□□□□ -0.56
SS18-203ENST00000415083 TBC1D10CQ8IV04 446 aa11.54□□□□□ -0.56
SS18-203ENST00000415083 DRC7Q8IY82 874 aa11.54□□□□□ -0.56
SS18-203ENST00000415083 ANKRD36CQ5JPF3 1778 aa11.54□□□□□ -0.56
SS18-203ENST00000415083 DOCK2Q92608 1830 aa11.54□□□□□ -0.56
SS18-203ENST00000415083 SMTNL1A8MU46 457 aa11.54□□□□□ -0.56
SS18-203ENST00000415083 ADALQ6DHV7 355 aa11.54□□□□□ -0.56
SS18-203ENST00000415083 FAM89AQ96GI7 184 aa11.54□□□□□ -0.56
SS18-203ENST00000415083 CCDC69A6NI79 296 aa11.53□□□□□ -0.56
SS18-203ENST00000415083 CSF1RP07333 972 aa11.53□□□□□ -0.56
SS18-203ENST00000415083 ME1P48163 572 aa11.53□□□□□ -0.56
SS18-203ENST00000415083 FBXO18Q8NFZ0 1043 aa11.53□□□□□ -0.56
SS18-203ENST00000415083 SYTL4Q96C24 671 aaPredicted RBP11.53□□□□□ -0.56
SS18-203ENST00000415083 CTNNA3Q9UI47 895 aa11.53□□□□□ -0.56
SS18-203ENST00000415083 PRC1O43663 620 aa11.53□□□□□ -0.56
SS18-203ENST00000415083 DMTNQ08495 405 aa11.53□□□□□ -0.56
SS18-203ENST00000415083 E4F1Q66K89 784 aaPredicted RBP11.53□□□□□ -0.56
SS18-203ENST00000415083 PDCL2Q8N4E4 241 aa11.53□□□□□ -0.56
SS18-203ENST00000415083 VGLL2Q8N8G2 317 aa11.53□□□□□ -0.56
SS18-203ENST00000415083 ATG3Q9NT62 314 aa11.53□□□□□ -0.56
SS18-203ENST00000415083 FAM217BQ9NTX9 383 aaPredicted RBP11.53□□□□□ -0.56
SS18-203ENST00000415083 ARAP2Q8WZ64 1704 aa11.53□□□□□ -0.56
SS18-203ENST00000415083 CDC27P30260 824 aa11.53□□□□□ -0.56
SS18-203ENST00000415083 KIF23Q02241 960 aaPredicted RBP11.53□□□□□ -0.56
SS18-203ENST00000415083 HLFQ16534 295 aa11.53□□□□□ -0.56
SS18-203ENST00000415083 NUP98P52948 1817 aa11.52□□□□□ -0.56
SS18-203ENST00000415083 IGSF3O75054 1194 aa11.52□□□□□ -0.57
SS18-203ENST00000415083 PTPN21Q16825 1174 aa11.52□□□□□ -0.57
SS18-203ENST00000415083 MYSM1Q5VVJ2 828 aa11.52□□□□□ -0.57
SS18-203ENST00000415083 MRPS27Q92552 414 aaKnown RBP11.52□□□□□ -0.57
SS18-203ENST00000415083 SLC4A9Q96Q91 983 aa11.52□□□□□ -0.57
SS18-203ENST00000415083 KCND1Q9NSA2 647 aa11.52□□□□□ -0.57
SS18-203ENST00000415083 KIAA1468Q9P260 1216 aa11.52□□□□□ -0.57
SS18-203ENST00000415083 RIPOR2Q9Y4F9 1068 aa11.52□□□□□ -0.57
SS18-203ENST00000415083 KLF18A0A0U1RQI7 1052 aa11.52□□□□□ -0.57
SS18-203ENST00000415083 A0A1W2PQ27 194 aa11.52□□□□□ -0.57
SS18-203ENST00000415083 A0A1W2PQ64 194 aa11.52□□□□□ -0.57
SS18-203ENST00000415083 A0A1W2PQD8 194 aa11.52□□□□□ -0.57
SS18-203ENST00000415083 RXRAP19793 462 aa11.52□□□□□ -0.57
SS18-203ENST00000415083 DCCP43146 1447 aa11.52□□□□□ -0.57
SS18-203ENST00000415083 FGD1P98174 961 aa11.52□□□□□ -0.57
SS18-203ENST00000415083 DPF2Q92785 391 aa11.52□□□□□ -0.57
SS18-203ENST00000415083 PIH1D3Q9NQM4 214 aaKnown RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms